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Volumn 1, Issue , 2008, Pages

Fast comparison of DNA sequences by oligonucleotide profiling

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EID: 77951213929     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-1-5     Document Type: Article
Times cited : (8)

References (21)
  • 1
    • 0037342499 scopus 로고    scopus 로고
    • Alignment-free sequence comparison - A review
    • 10.1093/bioinformatics/btg005. 12611807
    • Alignment-free sequence comparison - a review. S Vinga J Almeida, Bioinformatics 2003 19 513 523 10.1093/bioinformatics/btg005 12611807
    • (2003) Bioinformatics , vol.19 , pp. 513-523
    • Vinga, S.1    Almeida, J.2
  • 2
    • 0032426005 scopus 로고    scopus 로고
    • Comparative DNA analysis across diverse genomes
    • 10.1146/annurev.genet.32.1.185. 9928479
    • Comparative DNA analysis across diverse genomes. S Karlin AM Campbell J Mrzek, Annu Rev Genet 1998 32 185 225 10.1146/annurev.genet.32.1.185 9928479
    • (1998) Annu Rev Genet , vol.32 , pp. 185-225
    • Karlin, S.1    Campbell, A.M.2    Mrzek, J.3
  • 3
    • 0031827381 scopus 로고    scopus 로고
    • Xlandscape: The graphical display of word frequencies in sequences
    • 10.1093/bioinformatics/14.1.74. 9520504
    • Xlandscape: the graphical display of word frequencies in sequences. S Levy L Compagnoni EW Myers GD Stormo, Bioinformatics 1998 14 74 80 10.1093/bioinformatics/14.1.74 9520504
    • (1998) Bioinformatics , vol.14 , pp. 74-80
    • Levy, S.1    Compagnoni, L.2    Myers, E.W.3    Stormo, G.D.4
  • 4
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • 11932250. 10.1101/gr.229202. Article published online before March 2002
    • BLAT - The BLAST-like alignment tool. WJ Kent, Genome Res 2002 12 656 664 11932250 10.1101/gr.229202. Article published online before March 2002
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 5
    • 0142028977 scopus 로고    scopus 로고
    • Annotating large genomes with exact word matches
    • DOI 10.1101/gr.1350803
    • Annotating large genomes with exact word matches. J Healy EE Thomas JT Schwartz M Wigler, Genome Res 2003 13 2306 2315 12975312 10.1101/gr.1350803 (Pubitemid 37265996)
    • (2003) Genome Research , vol.13 , Issue.10 , pp. 2306-2315
    • Healy, J.1    Thomas, E.E.2    Schwartz, J.T.3    Wigler, M.4
  • 6
    • 0032483307 scopus 로고    scopus 로고
    • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    • 10.1006/jmbi.1998.1947. 9719638
    • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J Van Helden B André J Collado-Vides, J Mol Biol 1998 281 827 842 10.1006/jmbi.1998.1947 9719638
    • (1998) J Mol Biol , vol.281 , pp. 827-842
    • Van Helden, J.1    André, B.2    Collado-Vides, J.3
  • 7
    • 0034818948 scopus 로고    scopus 로고
    • Skew of mononucleotide frequencies, relative abundance of dinucleotides and DNA strand asymmetry
    • 10.1007/s002390010226. 11675596
    • Skew of mononucleotide frequencies, relative abundance of dinucleotides and DNA strand asymmetry. C Shioiri N Takahata, J Mol Evol 2001 53 364 376 10.1007/s002390010226 11675596
    • (2001) J Mol Evol , vol.53 , pp. 364-376
    • Shioiri, C.1    Takahata, N.2
  • 8
    • 0037268258 scopus 로고    scopus 로고
    • Genome-wide analysis of microsatellite repeats in humans: Their abundance and density in specific genomic regions
    • 12620123. 10.1186/gb-2003-4-2-r13
    • Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions. S Subramanian RK Mishra L Singh, Genome Biol 2003 4 13 12620123 10.1186/gb-2003-4-2-r13
    • (2003) Genome Biol , vol.4 , pp. 1813
    • Subramanian, S.1    Mishra, R.K.2    Singh, L.3
  • 9
    • 25444440555 scopus 로고    scopus 로고
    • Sequence signature analysis of chromosome identity in three Drosophila species
    • DOI 10.1186/1471-2105-6-158
    • Sequence signature analysis of chromosome identity in three Drosophila species. P Stenberg F Pettersson AO Saura A Berglund J Larsson, BMC Bioinformatics 2005 6 158 15975141 10.1186/1471-2105-6-158 (Pubitemid 41372507)
    • (2005) BMC Bioinformatics , vol.6 , pp. 158
    • Stenberg, P.1    Pettersson, F.2    Saura, A.O.3    Berglund, A.4    Larsson, J.5
  • 10
    • 0032823783 scopus 로고    scopus 로고
    • Genomic signature: Characterization and classification of species assessed by chaos game representation of sequences
    • 10563018
    • Genomic signature: characterization and classification of species assessed by chaos game representation of sequences. PJ Deschavanne A Giron J Vilain G Fagot B Fertil, Mol Biol Evol 1999 16 1391 1399 10563018
    • (1999) Mol Biol Evol , vol.16 , pp. 1391-1399
    • Deschavanne, P.J.1    Giron, A.2    Vilain, J.3    Fagot, G.4    Fertil, B.5
  • 11
    • 0036796553 scopus 로고    scopus 로고
    • Frequent oligonucleotide motifs in genomes of three streptococci
    • 12364600. 10.1093/nar/gkf534
    • Frequent oligonucleotide motifs in genomes of three streptococci. J Mrazek LH Gaynon S Karlin, Nucl Acids Res 2002 30 4216 4221 12364600 10.1093/nar/gkf534
    • (2002) Nucl Acids Res , vol.30 , pp. 4216-4221
    • Mrazek, J.1    Gaynon, L.H.2    Karlin, S.3
  • 12
    • 2342647392 scopus 로고    scopus 로고
    • Statistical analysis of over-represented words in human promoter sequences
    • DOI 10.1093/nar/gkh246
    • Statistical analysis of over-represented words in human promoter sequences. L Marĩo-Ramírez JL Spouge GC Kanga D Landsman, Nucl Acids Res 2004 32 949 958 14963262 10.1093/nar/gkh246 (Pubitemid 38854697)
    • (2004) Nucleic Acids Research , vol.32 , Issue.3 , pp. 949-958
    • Marino-Ramirez, L.1    Spouge, J.L.2    Kanga, G.C.3    Landsman, D.4
  • 13
    • 23144435335 scopus 로고    scopus 로고
    • GENSTYLE: Exploration and analysis of DNA sequences with genomic signature
    • DOI 10.1093/nar/gki489
    • GENSTYLE: exploration and analysis of DNA sequences with genomic signature. B Fertil M Massin S Lespinats C Devic P Dumee A Giron, Nucl Acids Res 2005 33 512 W515 15980524 10.1093/nar/gki489 (Pubitemid 44529973)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISS.
    • Fertil, B.1    Massin, M.2    Lespinats, S.3    Devic, C.4    Dumee, P.5    Giron, A.6
  • 14
    • 33645498565 scopus 로고    scopus 로고
    • Word frequency analysis reveals enrichment of dinucleotide repeats on the human X chromosome and [GATA]n in the X escape region
    • 16533911. 10.1101/gr.4627606
    • Word frequency analysis reveals enrichment of dinucleotide repeats on the human X chromosome and [GATA]n in the X escape region. JA McNeil KP Smith LL Hall JB Lawrence, Genome Research 2006 16 477 484 16533911 10.1101/gr.4627606
    • (2006) Genome Research , vol.16 , pp. 477-484
    • McNeil, J.A.1    Smith, K.P.2    Hall, L.L.3    Lawrence, J.B.4
  • 15
    • 0032413411 scopus 로고    scopus 로고
    • Predicting gene regulatory elements in silico on a genomic scale
    • 9847082
    • Predicting gene regulatory elements in silico on a genomic scale. A Brazma I Jonassen J Vilo E Ukkonen, Genome Res 1998 8 1202 1215 9847082
    • (1998) Genome Res , vol.8 , pp. 1202-1215
    • Brazma, A.1    Jonassen, I.2    Vilo, J.3    Ukkonen, E.4
  • 16
    • 0037162497 scopus 로고    scopus 로고
    • SCORE: A computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data
    • DOI 10.1073/pnas.152320899
    • SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. M Rebeiz NL Reevers JW Posakony, Proc Natl Acad Sci USA 2002 99 9888 9993 12107285 10.1073/pnas. 152320899 (Pubitemid 34831142)
    • (2002) Proceedings of the National Academy of Sciences of the United States of America , vol.99 , Issue.15 , pp. 9888-9893
    • Rebeiz, M.1    Reeves, N.L.2    Posakony, J.W.3
  • 17
    • 0037115891 scopus 로고    scopus 로고
    • Discovery of novel transcription factor binding sites by statistical overrepresentation
    • DOI 10.1093/nar/gkf669
    • Discovery of novel transcription factor binding sites by statistical overrepresentation. S Sinha M Tompa, Nucl Acids Res 2002 30 5549 5560 12490723 10.1093/nar/gkf669 (Pubitemid 36113932)
    • (2002) Nucleic Acids Research , vol.30 , Issue.24 , pp. 5549-5560
    • Sinha, S.1    Tompa, M.2
  • 19
    • 38049172824 scopus 로고    scopus 로고
    • Global patterns of sequence evolution in Drosophila
    • 17996078. 10.1186/1471-2164-8-408
    • Global patterns of sequence evolution in Drosophila. M Gallach V Arnau I Marín, BMC Genomics 2007 8 408 17996078 10.1186/1471-2164-8-408
    • (2007) BMC Genomics , vol.8 , pp. 408
    • Gallach, M.1    Arnau, V.2    Marín, I.3
  • 20
  • 21
    • 0025340372 scopus 로고
    • Chaos game representation of gene structure
    • 2336393. 10.1093/nar/18.8.2163
    • Chaos game representation of gene structure. HJ Jeffrey, Nucl Acids Res 1990 18 2163 2170 2336393 10.1093/nar/18.8.2163
    • (1990) Nucl Acids Res , vol.18 , pp. 2163-2170
    • Jeffrey, H.J.1


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