메뉴 건너뛰기




Volumn 48, Issue 3, 2007, Pages 301-309

Grid-enabled BLASTZ: Application to comparative genomics

Author keywords

BLAST; BLASTZ; Comparative genomics; Grid computing; Noncoding regions; Sequence alignment

Indexed keywords

BIOINFORMATICS; COMPUTER RESOURCE MANAGEMENT; GENE ENCODING; GRID COMPUTING; RESOURCE ALLOCATION;

EID: 34548460657     PISSN: 13875485     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11265-007-0065-6     Document Type: Article
Times cited : (3)

References (26)
  • 4
    • 33750975048 scopus 로고    scopus 로고
    • Constructing Large Suffix Trees on a Computational Grid
    • in press, doi: 10.1016/j.jpdc.2006.08.004
    • C. X. Chen and B. Schmidt, "Constructing Large Suffix Trees on a Computational Grid," Journal of Parallel Distributed Computing, in press, doi: 10.1016/j.jpdc.2006.08.004.
    • Journal of Parallel Distributed Computing
    • Chen, C.X.1    Schmidt, B.2
  • 5
    • 18744395183 scopus 로고    scopus 로고
    • Numerous Potentially Functional but Non-genic Conserved Sequences on Human Chromosome 21
    • E. T. Dermitzakis, A. Reymond, R. Lyle, N. Scamuffa, C. Ucla, S. Deutsch, etc., "Numerous Potentially Functional but Non-genic Conserved Sequences on Human Chromosome 21," Nature, vol. 420, 2002.
    • (2002) Nature , vol.420
    • Dermitzakis, E.T.1    Reymond, A.2    Lyle, R.3    Scamuffa, N.4    Ucla, C.5    Deutsch, S.6
  • 7
    • 18744369030 scopus 로고    scopus 로고
    • Y. Gitton, N. Dahmane, S. Baik, A. R. i Altaba, L. Neidhardt, M. Scholze, B. G. Herrmann, P. Kahlemk, A. Benkahlak, S. Schrinnerk, R. Yildirimmank, R. Herwigk, H. Lehrachk, and M.-L. Yaspok, A Gene Expression Map of Human Chromosome 21 Orthologues in the Mouse, Nature, 420, 2002.
    • Y. Gitton, N. Dahmane, S. Baik, A. R. i Altaba, L. Neidhardt, M. Scholze, B. G. Herrmann, P. Kahlemk, A. Benkahlak, S. Schrinnerk, R. Yildirimmank, R. Herwigk, H. Lehrachk, and M.-L. Yaspok, "A Gene Expression Map of Human Chromosome 21 Orthologues in the Mouse," Nature, vol. 420, 2002.
  • 9
    • 0025259313 scopus 로고
    • Methods for Assessing the Statistical Significance of Molecular Sequence Features by Using General Scoring Schemes
    • S. Karlin and S. F. Altschul, "Methods for Assessing the Statistical Significance of Molecular Sequence Features by Using General Scoring Schemes," Proc. Natl. Acad. Sci., vol. 87, 1990, 2264-2268.
    • (1990) Proc. Natl. Acad. Sci , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 10
    • 0027175241 scopus 로고
    • Applications and Statistics for Multiple High-Scoring Segments in Molecular Sequences
    • S. Karlin and S. F. Altschul, "Applications and Statistics for Multiple High-Scoring Segments in Molecular Sequences," Proc. Natl. Acad. Sci., vol. 90, 1993, 5873-5877.
    • (1993) Proc. Natl. Acad. Sci , vol.90 , pp. 5873-5877
    • Karlin, S.1    Altschul, S.F.2
  • 12
    • 27644464706 scopus 로고    scopus 로고
    • A. Krishnan, GridBLAST: a Globus-Based High-Throughput Implementation of BLAST in a Grid Computing Framework, Concurrency and Computation: Practice and Experience, 1.7, no. 13, 2005, pp. 1607-1623.
    • A. Krishnan, "GridBLAST: a Globus-Based High-Throughput Implementation of BLAST in a Grid Computing Framework," Concurrency and Computation: Practice and Experience, vol. 1.7, no. 13, 2005, pp. 1607-1623.
  • 13
    • 3142740663 scopus 로고    scopus 로고
    • Comparative Genomics
    • R. C. Hardison "Comparative Genomics," PLoS Biol., vol. 1, no. 2, 2003, pp. e58.
    • (2003) PLoS Biol , vol.1 , Issue.2
    • Hardison, R.C.1
  • 17
    • 34548424247 scopus 로고    scopus 로고
    • C. A. Stewart, D. Hart, D. K. Berry, G. J. Olsen, E. A. Wernert, and F. W. ischer, Parallel Implementation and Performance of fastDNAml: A Program for Maximum Likelihood Phylogenetic Inference, SC2001. Denver, CO, USA. 2001.
    • C. A. Stewart, D. Hart, D. K. Berry, G. J. Olsen, E. A. Wernert, and F. W. ischer, "Parallel Implementation and Performance of fastDNAml: A Program for Maximum Likelihood Phylogenetic Inference," SC2001. Denver, CO, USA. 2001.
  • 18
    • 0035351171 scopus 로고    scopus 로고
    • On the Parallelisation of Bioinformatics Applications
    • O. Trelles, "On the Parallelisation of Bioinformatics Applications," Brief. Bioinform., vol. 2, no. 2, 2001, 181-194.
    • (2001) Brief. Bioinform , vol.2 , Issue.2 , pp. 181-194
    • Trelles, O.1
  • 19
    • 84944906080 scopus 로고    scopus 로고
    • A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model
    • W. R. Zhu, Y. W. Niu, J. Z. Lu, C. Shen, and G. R. Gao, "A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model," Cluster 2003, 2003.
    • (2003) Cluster 2003
    • Zhu, W.R.1    Niu, Y.W.2    Lu, J.Z.3    Shen, C.4    Gao, G.R.5
  • 20
    • 34548379224 scopus 로고    scopus 로고
    • BLAST Manual: http://www.ncbi.nlm.nih.gov/blast/blast_ help.shtml
    • BLAST Manual
  • 23
    • 34548403164 scopus 로고    scopus 로고
    • Ensembl Project
    • Ensembl Project: http://www.ensembl.org/index.html
  • 24
    • 34548437157 scopus 로고    scopus 로고
    • GLOBUS Project
    • GLOBUS Project: http://www.globus.org
  • 25
    • 34548459529 scopus 로고    scopus 로고
    • Master-Slave paradigm: http://charm.cs.uiuc.edu/research/masterSlave/
    • Master-Slave paradigm: http://charm.cs.uiuc.edu/research/masterSlave/
  • 26
    • 34548387220 scopus 로고    scopus 로고
    • Sun grid engine project
    • Sun grid engine project: http://gridengine.sunsource.net/


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.