-
1
-
-
33947494610
-
An automated tracking system for Caenorhabditis elegans locomotor behavior and circadian studies application
-
Simonetta SH, Golombek DA (2007) An automated tracking system for Caenorhabditis elegans locomotor behavior and circadian studies application. J Neurosci Methods 161: 273-280.
-
(2007)
J Neurosci Methods
, vol.161
, pp. 273-280
-
-
Simonetta, S.H.1
Golombek, D.A.2
-
2
-
-
50249090043
-
Circadian stress tolerance in adult Caenorhabditis elegans
-
Simonetta SH, Romanowski A, Minniti AN, Inestrosa NC, Golombek DA (2008) Circadian stress tolerance in adult Caenorhabditis elegans. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 194: 821-828.
-
(2008)
J Comp Physiol A Neuroethol Sens Neural Behav Physiol
, vol.194
, pp. 821-828
-
-
Simonetta, S.H.1
Romanowski, A.2
Minniti, A.N.3
Inestrosa, N.C.4
Golombek, D.A.5
-
5
-
-
84863571935
-
Daily variation in melatonin synthesis and arylalkylamine N-acetyltransferase activity in the nematode Caenorhabditis elegans
-
Migliori ML, Romanowski A, Simonetta SH, Valdez D, Guido M, et al. (2012) Daily variation in melatonin synthesis and arylalkylamine N-acetyltransferase activity in the nematode Caenorhabditis elegans. J Pineal Res 53: 38-46.
-
(2012)
J Pineal Res
, vol.53
, pp. 38-46
-
-
Migliori, M.L.1
Romanowski, A.2
Simonetta, S.H.3
Valdez, D.4
Guido, M.5
-
6
-
-
78650600145
-
Circadian variation in Pseudomonas fluorescens (CHA0)-mediated paralysis of Caenorhabditis elegans
-
Romanowski A, Migliori ML, Valverde C, Golombek DA (2011) Circadian variation in Pseudomonas fluorescens (CHA0)-mediated paralysis of Caenorhabditis elegans. Microb Pathog 50: 23-30.
-
(2011)
Microb Pathog
, vol.50
, pp. 23-30
-
-
Romanowski, A.1
Migliori, M.L.2
Valverde, C.3
Golombek, D.A.4
-
7
-
-
0025044560
-
Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levels
-
Hardin PE, Hall JC, Rosbash M (1990) Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levels. Nature 343: 536-540.
-
(1990)
Nature
, vol.343
, pp. 536-540
-
-
Hardin, P.E.1
Hall, J.C.2
Rosbash, M.3
-
8
-
-
0028258994
-
Negative feedback defining a circadian clock: Autoregulation of the clock gene frequency
-
Aronson BD, Johnson KA, Loros JJ, Dunlap JC (1994) Negative feedback defining a circadian clock: autoregulation of the clock gene frequency. Science 263: 1578-1584.
-
(1994)
Science
, vol.263
, pp. 1578-1584
-
-
Aronson, B.D.1
Johnson, K.A.2
Loros, J.J.3
Dunlap, J.C.4
-
9
-
-
84858172824
-
Re inventing the circadian feedback loop
-
Brown SA, Kowalska E, Dallmann R (2012) (Re)inventing the circadian feedback loop. Dev Cell 22: 477-487.
-
(2012)
Dev Cell
, vol.22
, pp. 477-487
-
-
Brown, S.A.1
Kowalska, E.2
Dallmann, R.3
-
10
-
-
79251566511
-
Circadian clocks in human red blood cells
-
O'Neill JS, Reddy AB (2011) Circadian clocks in human red blood cells. Nature 469: 498-503.
-
(2011)
Nature
, vol.469
, pp. 498-503
-
-
O'neill, J.S.1
Reddy, A.B.2
-
11
-
-
79251539603
-
Circadian rhythms persist without transcription in a eukaryote
-
O'Neill JS, van Ooijen G, Dixon LE, Troein C, Corellou F, et al. (2011) Circadian rhythms persist without transcription in a eukaryote. Nature 469: 554-558.
-
(2011)
Nature
, vol.469
, pp. 554-558
-
-
O'neill, J.S.1
Van Ooijen, G.2
Dixon, L.E.3
Troein, C.4
Corellou, F.5
-
12
-
-
84861452257
-
Peroxiredoxins are conserved markers of circadian rhythms
-
Edgar RS, Green EW, Zhao Y, van Ooijen G, Olmedo M, et al. (2012) Peroxiredoxins are conserved markers of circadian rhythms. Nature 485: 459-464.
-
(2012)
Nature
, vol.485
, pp. 459-464
-
-
Edgar, R.S.1
Green, E.W.2
Zhao, Y.3
Van Ooijen, G.4
Olmedo, M.5
-
13
-
-
33749031807
-
Molecular components of the mammalian circadian clock
-
Ko CH, Takahashi JS (2006) Molecular components of the mammalian circadian clock. Hum Mol Genet 15 Spec No 2: R271-277.
-
(2006)
Hum Mol Genet 15 Spec
, Issue.2
, pp. R271-277
-
-
Ko, C.H.1
Takahashi, J.S.2
-
14
-
-
0033597921
-
Lightdependent sequestration of Timeless by Cryptochrome
-
Ceriani MF, Darlington TK, Staknis D, Mas P, Petti AA, et al. (1999) Lightdependent sequestration of TIMELESS by CRYPTOCHROME. Science 285: 553-556.
-
(1999)
Science
, vol.285
, pp. 553-556
-
-
Ceriani, M.F.1
Darlington, T.K.2
Staknis, D.3
Mas, P.4
Petti, A.A.5
-
15
-
-
0035923746
-
Circadian regulation of gene expression systems in the Drosophila head
-
Claridge-Chang A, Wijnen H, Naef F, Boothroyd C, Rajewsky N, et al. (2001) Circadian regulation of gene expression systems in the Drosophila head. Neuron 32: 657-671.
-
(2001)
Neuron
, vol.32
, pp. 657-671
-
-
Claridge-Chang, A.1
Wijnen, H.2
Naef, F.3
Boothroyd, C.4
Rajewsky, N.5
-
17
-
-
79955900313
-
Timing in plants-A rhythmic arrangement
-
McWatters HG, Devlin PF (2011) Timing in plants-a rhythmic arrangement. FEBS Lett 585: 1474-1484.
-
(2011)
FEBS Lett
, vol.585
, pp. 1474-1484
-
-
McWatters, H.G.1
Devlin, P.F.2
-
18
-
-
0032483510
-
Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria
-
Ishiura M, Kutsuna S, Aoki S, Iwasaki H, Andersson CR, et al. (1998) Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 281: 1519-1523.
-
(1998)
Science
, vol.281
, pp. 1519-1523
-
-
Ishiura, M.1
Kutsuna, S.2
Aoki, S.3
Iwasaki, H.4
Andersson, C.R.5
-
19
-
-
33746147001
-
Cyanobacterial circadian pacemaker: Kai protein complex dynamics in the KaiC phosphorylation cycle in vitro
-
Kageyama H, Nishiwaki T, Nakajima M, Iwasaki H, Oyama T, et al. (2006) Cyanobacterial circadian pacemaker: Kai protein complex dynamics in the KaiC phosphorylation cycle in vitro. Mol Cell 23: 161-171.
-
(2006)
Mol Cell
, vol.23
, pp. 161-171
-
-
Kageyama, H.1
Nishiwaki, T.2
Nakajima, M.3
Iwasaki, H.4
Oyama, T.5
-
20
-
-
17244374730
-
Caenorhabditis elegans opens up new insights into circadian clock mechanisms
-
Hasegawa K, Saigusa T, Tamai Y (2005) Caenorhabditis elegans opens up new insights into circadian clock mechanisms. Chronobiol Int 22: 1-19.
-
(2005)
Chronobiol Int
, vol.22
, pp. 1-19
-
-
Hasegawa, K.1
Saigusa, T.2
Tamai, Y.3
-
21
-
-
0033527724
-
Similarity of the C elegans developmental timing protein LIN-42 to circadian rhythm proteins
-
Jeon M, Gardner HF, Miller EA, Deshler J, Rougvie AE (1999) Similarity of the C. elegans developmental timing protein LIN-42 to circadian rhythm proteins. Science 286: 1141-1146.
-
(1999)
Science
, vol.286
, pp. 1141-1146
-
-
Jeon, M.1
Gardner, H.F.2
Miller, E.A.3
Deshler, J.4
Rougvie, A.E.5
-
22
-
-
29144439248
-
Novel heterochronic functions of the Caenorhabditis elegans period-related protein LIN-42
-
Tennessen JM, Gardner HF, Volk ML, Rougvie AE (2006) Novel heterochronic functions of the Caenorhabditis elegans period-related protein LIN-42. Dev Biol 289: 30-43.
-
(2006)
Dev Biol
, vol.289
, pp. 30-43
-
-
Tennessen, J.M.1
Gardner, H.F.2
Volk, M.L.3
Rougvie, A.E.4
-
23
-
-
2342655069
-
The Caenorhabditis elegans aryl hydrocarbon receptor, AHR-1, regulates neuronal development
-
Qin H, Powell-Coffman JA (2004) The Caenorhabditis elegans aryl hydrocarbon receptor, AHR-1, regulates neuronal development. Dev Biol 270: 64-75.
-
(2004)
Dev Biol
, vol.270
, pp. 64-75
-
-
Qin, H.1
Powell-Coffman, J.A.2
-
24
-
-
78149388651
-
Genome-wide analysis of light- and temperature-entrained circadian transcripts in Caenorhabditis elegans
-
van der Linden AM, Beverly M, Kadener S, Rodriguez J, Wasserman S, et al. (2010) Genome-wide analysis of light- and temperature-entrained circadian transcripts in Caenorhabditis elegans. PLoS Biol 8: e1000503.
-
(2010)
PLoS Biol
, vol.8
, pp. e1000503
-
-
Van Der Linden, A.M.1
Beverly, M.2
Kadener, S.3
Rodriguez, J.4
Wasserman, S.5
-
25
-
-
79952479780
-
C elegans homologs of insect clock proteins: A tale of many stories
-
Temmerman L, Meelkop E, Janssen T, Bogaerts A, Lindemans M, et al. (2011) C. elegans homologs of insect clock proteins: a tale of many stories. Ann N Y Acad Sci 1220: 137-148.
-
(2011)
Ann N y Acad Sci
, vol.1220
, pp. 137-148
-
-
Temmerman, L.1
Meelkop, E.2
Janssen, T.3
Bogaerts, A.4
Lindemans, M.5
-
26
-
-
80055082271
-
Accelerated profile HMM searches
-
Eddy SR (2011) Accelerated Profile HMM Searches. PLoS Comput Biol 7: e1002195.
-
(2011)
PLoS Comput Biol
, vol.7
, pp. e1002195
-
-
Eddy, S.R.1
-
27
-
-
77955591777
-
Hidden Markov model speed heuristic and iterative HMM search procedure
-
Johnson LS, Eddy SR, Portugaly E (2010) Hidden Markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics 11: 431.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 431
-
-
Johnson, L.S.1
Eddy, S.R.2
Portugaly, E.3
-
28
-
-
79959931985
-
HMMER web server: Interactive sequence similarity searching
-
Finn RD, Clements J, Eddy SR (2011) HMMER web server: interactive sequence similarity searching. Nucleic Acids Res 39: W29-37.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W29-37
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
29
-
-
68849131258
-
HaMStR: Profile hidden markov model based search for orthologs in ESTs
-
Ebersberger I, Strauss S, von Haeseler A (2009) HaMStR: profile hidden markov model based search for orthologs in ESTs. BMC Evol Biol 9: 157.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 157
-
-
Ebersberger, I.1
Strauss, S.2
Von Haeseler, A.3
-
31
-
-
79958267118
-
The RNA helicase Mtr4p modulates polyadenylation in the TRAMP complex
-
Jia H, Wang X, Liu F, Guenther UP, Srinivasan S, et al. (2011) The RNA helicase Mtr4p modulates polyadenylation in the TRAMP complex. Cell 145: 890-901.
-
(2011)
Cell
, vol.145
, pp. 890-901
-
-
Jia, H.1
Wang, X.2
Liu, F.3
Guenther, U.P.4
Srinivasan, S.5
-
32
-
-
63849206472
-
Multiple ERK substrates execute single biological processes in Caenorhabditis elegans germ-line development
-
Arur S, Ohmachi M, Nayak S, Hayes M, Miranda A, et al. (2009) Multiple ERK substrates execute single biological processes in Caenorhabditis elegans germ-line development. Proc Natl Acad Sci U S A 106: 4776-4781.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 4776-4781
-
-
Arur, S.1
Ohmachi, M.2
Nayak, S.3
Hayes, M.4
Miranda, A.5
-
33
-
-
0034537136
-
The celegans F-box/WDrepeat protein LIN-23 functions to limit cell division during development
-
Kipreos ET, Gohel SP, Hedgecock EM (2000) The C. elegans F-box/WDrepeat protein LIN-23 functions to limit cell division during development. Development 127: 5071-5082.
-
(2000)
Development
, vol.127
, pp. 5071-5082
-
-
Kipreos, E.T.1
Gohel, S.P.2
Hedgecock, E.M.3
-
34
-
-
0037083918
-
Fzr-1 and lin-35/Rb function redundantly to control cell proliferation in C elegans as revealed by a nonbiased synthetic screen
-
Fay DS, Keenan S, Han M (2002) fzr-1 and lin-35/Rb function redundantly to control cell proliferation in C. elegans as revealed by a nonbiased synthetic screen. Genes Dev 16: 503-517.
-
(2002)
Genes Dev
, vol.16
, pp. 503-517
-
-
Fay, D.S.1
Keenan, S.2
Han, M.3
-
35
-
-
1542355503
-
A genetic screen for neurite outgrowth mutants in Caenorhabditis elegans reveals a new function for the F-box ubiquitin ligase component LIN-23
-
Mehta N, Loria PM, Hobert O (2004) A genetic screen for neurite outgrowth mutants in Caenorhabditis elegans reveals a new function for the F-box ubiquitin ligase component LIN-23. Genetics 166: 1253-1267.
-
(2004)
Genetics
, vol.166
, pp. 1253-1267
-
-
Mehta, N.1
Loria, P.M.2
Hobert, O.3
-
36
-
-
16844385820
-
LIN-23-mediated degradation of betacatenin regulates the abundance of GLR-1 glutamate receptors in the ventral nerve cord of C elegans
-
Dreier L, Burbea M, Kaplan JM (2005) LIN-23-mediated degradation of betacatenin regulates the abundance of GLR-1 glutamate receptors in the ventral nerve cord of C. elegans. Neuron 46: 51-64.
-
(2005)
Neuron
, vol.46
, pp. 51-64
-
-
Dreier, L.1
Burbea, M.2
Kaplan, J.M.3
-
37
-
-
0020808726
-
Egg-laying defective mutants of the nematode Caenorhabditis elegans
-
Trent C, Tsuing N, Horvitz HR (1983) Egg-laying defective mutants of the nematode Caenorhabditis elegans. Genetics 104: 619-647.
-
(1983)
Genetics
, vol.104
, pp. 619-647
-
-
Trent, C.1
Tsuing, N.2
Horvitz, H.R.3
-
38
-
-
0033571861
-
Block of an ether-A-gogo- like K(+) channel by imipramine rescues egl-2 excitation defects in Caenorhabditis elegans
-
Weinshenker D, Wei A, Salkoff L, Thomas JH (1999) Block of an ether-a-gogo- like K(+) channel by imipramine rescues egl-2 excitation defects in Caenorhabditis elegans. J Neurosci 19: 9831-9840.
-
(1999)
J Neurosci
, vol.19
, pp. 9831-9840
-
-
Weinshenker, D.1
Wei, A.2
Salkoff, L.3
Thomas, J.H.4
-
39
-
-
0035810249
-
Celegans odour discrimination requires asymmetric diversity in olfactory neurons
-
Wes PD, Bargmann CI (2001) C. elegans odour discrimination requires asymmetric diversity in olfactory neurons. Nature 410: 698-701.
-
(2001)
Nature
, vol.410
, pp. 698-701
-
-
Wes, P.D.1
Bargmann, C.I.2
-
40
-
-
78951469665
-
The effects of transient starvation persist through direct interactions between CaMKII and ether-A-go-go K+ channels in C elegans males
-
LeBoeuf B, Guo X, Garcia LR (2011) The effects of transient starvation persist through direct interactions between CaMKII and ether-a-go-go K+ channels in C. elegans males. Neuroscience 175: 1-17.
-
(2011)
Neuroscience
, vol.175
, pp. 1-17
-
-
Leboeuf, B.1
Guo, X.2
Garcia, L.R.3
-
41
-
-
0034940761
-
The Caenorhabditis elegans hif-1 gene encodes a bHLH-PAS protein that is required for adaptation to hypoxia
-
Jiang H, Guo R, Powell-Coffman JA (2001) The Caenorhabditis elegans hif-1 gene encodes a bHLH-PAS protein that is required for adaptation to hypoxia. Proc Natl Acad Sci U S A 98: 7916-7921.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 7916-7921
-
-
Jiang, H.1
Guo, R.2
Powell-Coffman, J.A.3
-
42
-
-
77952316518
-
A comparative view of insect circadian clock systems
-
Tomioka K, Matsumoto A (2010) A comparative view of insect circadian clock systems. Cell Mol Life Sci 67: 1397-1406.
-
(2010)
Cell Mol Life Sci
, vol.67
, pp. 1397-1406
-
-
Tomioka, K.1
Matsumoto, A.2
-
43
-
-
34047220139
-
Insect cryptochromes: Gene duplication and loss define diverse ways to construct insect circadian clocks
-
Yuan Q, Metterville D, Briscoe AD, Reppert SM (2007) Insect cryptochromes: gene duplication and loss define diverse ways to construct insect circadian clocks. Mol Biol Evol 24: 948-955.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 948-955
-
-
Yuan, Q.1
Metterville, D.2
Briscoe, A.D.3
Reppert, S.M.4
-
44
-
-
0038496744
-
Chromosome cohesion is regulated by a clock gene paralogue TIM-1
-
Chan RC, Chan A, Jeon M, Wu TF, Pasqualone D, et al. (2003) Chromosome cohesion is regulated by a clock gene paralogue TIM-1. Nature 423: 1002-1009.
-
(2003)
Nature
, vol.423
, pp. 1002-1009
-
-
Chan, R.C.1
Chan, A.2
Jeon, M.3
Wu, T.F.4
Pasqualone, D.5
-
45
-
-
0032539796
-
Caenorhabditis elegans orthologs of the aryl hydrocarbon receptor and its heterodimerization partner the aryl hydrocarbon receptor nuclear translocator
-
Powell-Coffman JA, Bradfield CA, Wood WB (1998) Caenorhabditis elegans orthologs of the aryl hydrocarbon receptor and its heterodimerization partner the aryl hydrocarbon receptor nuclear translocator. Proc Natl Acad Sci U S A 95: 2844-2849.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 2844-2849
-
-
Powell-Coffman, J.A.1
Bradfield, C.A.2
Wood, W.B.3
-
46
-
-
34548016552
-
Characterization of drosophila and caenorhabditis elegans nxf-like-factors, putative homologs of mammalian nXF
-
Ooe N, Saito K, Oeda K, Nakatuka I, Kaneko H (2007) Characterization of Drosophila and Caenorhabditis elegans NXF-like-factors, putative homologs of mammalian NXF. Gene 400: 122-130.
-
(2007)
Gene
, vol.400
, pp. 122-130
-
-
Ooe, N.1
Saito, K.2
Oeda, K.3
Nakatuka, I.4
Kaneko, H.5
-
47
-
-
77952885238
-
C elegans phototransduction requires a G protein-dependent cGMP pathway and a taste receptor homolog
-
Liu J, Ward A, Gao J, Dong Y, Nishio N, et al. (2010) C. elegans phototransduction requires a G protein-dependent cGMP pathway and a taste receptor homolog. Nat Neurosci 13: 715-722.
-
(2010)
Nat Neurosci
, vol.13
, pp. 715-722
-
-
Liu, J.1
Ward, A.2
Gao, J.3
Dong, Y.4
Nishio, N.5
-
50
-
-
79955674412
-
Shared developmental roles and transcriptional control of autophagy and apoptosis in Caenorhabditis elegans
-
Erdelyi P, Borsos E, Takacs-Vellai K, Kovacs T, Kovacs AL, et al. (2011) Shared developmental roles and transcriptional control of autophagy and apoptosis in Caenorhabditis elegans. J Cell Sci 124: 1510-1518.
-
(2011)
J Cell Sci
, vol.124
, pp. 1510-1518
-
-
Erdelyi, P.1
Borsos, E.2
Takacs-Vellai, K.3
Kovacs, T.4
Kovacs, A.L.5
-
51
-
-
43249115184
-
Control of apoptosis by asymmetric cell division
-
Hatzold J, Conradt B (2008) Control of apoptosis by asymmetric cell division. PLoS Biol 6: e84.
-
(2008)
PLoS Biol
, vol.6
, pp. e84
-
-
Hatzold, J.1
Conradt, B.2
-
52
-
-
30044450970
-
The bZip proteins CES-2 and ATF-2 alter the timing of transcription for a cell-specific target gene in Celegans
-
Wang X, Jia H, Chamberlin HM (2006) The bZip proteins CES-2 and ATF-2 alter the timing of transcription for a cell-specific target gene in C. elegans. Dev Biol 289: 456-465.
-
(2006)
Dev Biol
, vol.289
, pp. 456-465
-
-
Wang, X.1
Jia, H.2
Chamberlin, H.M.3
-
53
-
-
0035912840
-
Nuclear hormone receptor CHR3 is a critical regulator of all four larval molts of the nematode Caenorhabditis elegans
-
Kostrouchova M, Krause M, Kostrouch Z, Rall JE (2001) Nuclear hormone receptor CHR3 is a critical regulator of all four larval molts of the nematode Caenorhabditis elegans. Proc Natl Acad Sci U S A 98: 7360-7365.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 7360-7365
-
-
Kostrouchova, M.1
Krause, M.2
Kostrouch, Z.3
Rall, J.E.4
-
54
-
-
0347761358
-
Expression and function of conserved nuclear receptor genes in Caenorhabditis elegans
-
Gissendanner CR, Crossgrove K, Kraus KA, Maina CV, Sluder AE (2004) Expression and function of conserved nuclear receptor genes in Caenorhabditis elegans. Dev Biol 266: 399-416.
-
(2004)
Dev Biol
, vol.266
, pp. 399-416
-
-
Gissendanner, C.R.1
Crossgrove, K.2
Kraus, K.A.3
Maina, C.V.4
Sluder, A.E.5
-
55
-
-
13944254430
-
System-level identification of transcriptional circuits underlying mammalian circadian clocks
-
Ueda HR, Hayashi S, Chen W, Sano M, Machida M, et al. (2005) System-level identification of transcriptional circuits underlying mammalian circadian clocks. Nat Genet 37: 187-192.
-
(2005)
Nat Genet
, vol.37
, pp. 187-192
-
-
Ueda, H.R.1
Hayashi, S.2
Chen, W.3
Sano, M.4
Machida, M.5
-
56
-
-
84863571935
-
Daily variation in melatonin synthesis and arylalkylamine N-acetyltransferase activity in the nematode Caenorhabditis elegans
-
Migliori ML, Romanowski A, Simonetta SH, Valdez D, Guido M, et al. (2011) Daily variation in melatonin synthesis and arylalkylamine N-acetyltransferase activity in the nematode Caenorhabditis elegans. J Pineal Res.
-
(2011)
J Pineal Res
-
-
Migliori, M.L.1
Romanowski, A.2
Simonetta, S.H.3
Valdez, D.4
Guido, M.5
-
57
-
-
70349213289
-
Discovery and characterization of a conserved pigment dispersing factor-like neuropeptide pathway in Caenorhabditis elegans
-
Janssen T, Husson SJ, Meelkop E, Temmerman L, Lindemans M, et al. (2009) Discovery and characterization of a conserved pigment dispersing factor-like neuropeptide pathway in Caenorhabditis elegans. J Neurochem 111: 228-241.
-
(2009)
J Neurochem
, vol.111
, pp. 228-241
-
-
Janssen, T.1
Husson, S.J.2
Meelkop, E.3
Temmerman, L.4
Lindemans, M.5
-
58
-
-
84864352942
-
PDF receptor signaling in Caenorhabditis elegans modulates locomotion and egglaying
-
Meelkop E, Temmerman L, Janssen T, Suetens N, Beets I, et al. (2012) PDF receptor signaling in Caenorhabditis elegans modulates locomotion and egglaying. Mol Cell Endocrinol 361: 232-240.
-
(2012)
Mol Cell Endocrinol
, vol.361
, pp. 232-240
-
-
Meelkop, E.1
Temmerman, L.2
Janssen, T.3
Suetens, N.4
Beets, I.5
-
59
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
-
60
-
-
78650804031
-
IPRStats: Visualization of the functional potential of an InterProScan run
-
Kelly RJ, Vincent DE, Friedberg I (2010) IPRStats: visualization of the functional potential of an InterProScan run. BMC Bioinformatics 11 Suppl 12: S13.
-
(2010)
BMC Bioinformatics 11 Suppl
, vol.12
, pp. S13
-
-
Kelly, R.J.1
Vincent, D.E.2
Friedberg, I.3
-
61
-
-
18844449201
-
Pulses of prolactin promoter activity depend on a noncanonical E-box that can bind the circadian proteins CLOCK and BMAL1
-
Leclerc GM, Boockfor FR (2005) Pulses of prolactin promoter activity depend on a noncanonical E-box that can bind the circadian proteins CLOCK and BMAL1. Endocrinology 146: 2782-2790.
-
(2005)
Endocrinology
, vol.146
, pp. 2782-2790
-
-
Leclerc, G.M.1
Boockfor, F.R.2
-
62
-
-
0034463801
-
The period E-box is sufficient to drive circadian oscillation of transcription in vivo
-
Darlington TK, Lyons LC, Hardin PE, Kay SA (2000) The period E-box is sufficient to drive circadian oscillation of transcription in vivo. J Biol Rhythms 15: 462-471.
-
(2000)
J Biol Rhythms
, vol.15
, pp. 462-471
-
-
Darlington, T.K.1
Lyons, L.C.2
Hardin, P.E.3
Kay, S.A.4
-
63
-
-
0029020282
-
Protein kinases 6 the eukaryotic protein kinase superfamily: Kinase (catalytic) domain structure and classification
-
Hanks SK, Hunter T (1995) Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 9: 576-596.
-
(1995)
FASEB J
, vol.9
, pp. 576-596
-
-
Hanks, S.K.1
Hunter, T.2
-
64
-
-
0034785827
-
Structural and evolutionary relationships among protein tyrosine phosphatase domains
-
Andersen JN, Mortensen OH, Peters GH, Drake PG, Iversen LF, et al. (2001) Structural and evolutionary relationships among protein tyrosine phosphatase domains. Mol Cell Biol 21: 7117-7136.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 7117-7136
-
-
Andersen, J.N.1
Mortensen, O.H.2
Peters, G.H.3
Drake, P.G.4
Iversen, L.F.5
-
65
-
-
79960295015
-
Molecular evolution of phosphoprotein phosphatases in Drosophila
-
Miskei M, Adam C, Kovacs L, Karanyi Z, Dombradi V (2011) Molecular evolution of phosphoprotein phosphatases in Drosophila. PLoS One 6: e22218.
-
(2011)
PLoS One
, vol.6
, pp. e22218
-
-
Miskei, M.1
Adam, C.2
Kovacs, L.3
Karanyi, Z.4
Dombradi, V.5
-
66
-
-
0025313882
-
Protein serine/threonine phosphatases; An expanding family
-
Cohen PT, Brewis ND, Hughes V, Mann DJ (1990) Protein serine/threonine phosphatases; an expanding family. FEBS Lett 268: 355-359.
-
(1990)
FEBS Lett
, vol.268
, pp. 355-359
-
-
Cohen, P.T.1
Brewis, N.D.2
Hughes, V.3
Mann, D.J.4
-
68
-
-
78149282260
-
A methyl transferase links the circadian clock to the regulation of alternative splicing
-
Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, et al. (2010) A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature 468: 112-116.
-
(2010)
Nature
, vol.468
, pp. 112-116
-
-
Sanchez, S.E.1
Petrillo, E.2
Beckwith, E.J.3
Zhang, X.4
Rugnone, M.L.5
-
70
-
-
0031010579
-
Evidence for a clade of nematodes, arthropods and other moulting animals
-
Aguinaldo AM, Turbeville JM, Linford LS, Rivera MC, Garey JR, et al. (1997) Evidence for a clade of nematodes, arthropods and other moulting animals. Nature 387: 489-493.
-
(1997)
Nature
, vol.387
, pp. 489-493
-
-
Aguinaldo, A.M.1
Turbeville, J.M.2
Linford, L.S.3
Rivera, M.C.4
Garey, J.R.5
-
71
-
-
0028465508
-
A molecular evolutionary framework for eukaryotic model organisms
-
Sidow A, Thomas WK (1994) A molecular evolutionary framework for eukaryotic model organisms. Curr Biol 4: 596-603.
-
(1994)
Curr Biol
, vol.4
, pp. 596-603
-
-
Sidow, A.1
Thomas, W.K.2
-
72
-
-
33846327177
-
Mammalian TIMELESS and Tipin are evolutionarily conserved replication fork-associated factors
-
Gotter AL, Suppa C, Emanuel BS (2007) Mammalian TIMELESS and Tipin are evolutionarily conserved replication fork-associated factors. J Mol Biol 366: 36-52.
-
(2007)
J Mol Biol
, vol.366
, pp. 36-52
-
-
Gotter, A.L.1
Suppa, C.2
Emanuel, B.S.3
-
73
-
-
76749137596
-
Drosophila timeless2 is required for chromosome stability and circadian photoreception
-
Benna C, Bonaccorsi S, Wulbeck C, Helfrich-Forster C, Gatti M, et al. (2010) Drosophila timeless2 is required for chromosome stability and circadian photoreception. Curr Biol 20: 346-352.
-
(2010)
Curr Biol
, vol.20
, pp. 346-352
-
-
Benna, C.1
Bonaccorsi, S.2
Wulbeck, C.3
Helfrich-Forster, C.4
Gatti, M.5
-
74
-
-
33748347313
-
A Timeless debate: Resolving TIM's noncircadian roles with possible clock function
-
Gotter AL (2006) A Timeless debate: resolving TIM's noncircadian roles with possible clock function. Neuroreport 17: 1229-1233.
-
(2006)
Neuroreport
, vol.17
, pp. 1229-1233
-
-
Gotter, A.L.1
-
75
-
-
77953158984
-
The many facets of the Tim-Tipin protein families' roles in chromosome biology
-
McFarlane RJ, Mian S, Dalgaard JZ (2010) The many facets of the Tim-Tipin protein families' roles in chromosome biology. Cell Cycle 9: 700-705.
-
(2010)
Cell Cycle
, vol.9
, pp. 700-705
-
-
McFarlane, R.J.1
Mian, S.2
Dalgaard, J.Z.3
-
76
-
-
13344249682
-
Developmental timing in Celegans is regulated by kin-20 and tim-1, homologs of core circadian clock genes
-
Banerjee D, Kwok A, Lin SY, Slack FJ (2005) Developmental timing in C. elegans is regulated by kin-20 and tim-1, homologs of core circadian clock genes. Dev Cell 8: 287-295.
-
(2005)
Dev Cell
, vol.8
, pp. 287-295
-
-
Banerjee, D.1
Kwok, A.2
Lin, S.Y.3
Slack, F.J.4
-
77
-
-
0038010064
-
Getting (chromosomes) loaded-A new role for timeless
-
Golden A, Cohen-Fix O (2003) Getting (chromosomes) loaded-a new role for timeless. Dev Cell 5: 7-9.
-
(2003)
Dev Cell
, vol.5
, pp. 7-9
-
-
Golden, A.1
Cohen-Fix, O.2
-
78
-
-
54449093513
-
Analysis and synthesis of high-amplitude Cis-elements in the mammalian circadian clock
-
Kumaki Y, Ukai-Tadenuma M, Uno KD, Nishio J, Masumoto KH, et al. (2008) Analysis and synthesis of high-amplitude Cis-elements in the mammalian circadian clock. Proc Natl Acad Sci U S A 105: 14946-14951.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 14946-14951
-
-
Kumaki, Y.1
Ukai-Tadenuma, M.2
Uno, K.D.3
Nishio, J.4
Masumoto, K.H.5
-
79
-
-
0037669486
-
The circadian E-box: When perfect is not good enough
-
Munoz E, Baler R (2003) The circadian E-box: when perfect is not good enough. Chronobiol Int 20: 371-388.
-
(2003)
Chronobiol Int
, vol.20
, pp. 371-388
-
-
Munoz, E.1
Baler, R.2
-
80
-
-
53349164230
-
Proof-by-synthesis of the transcriptional logic of mammalian circadian clocks
-
Ukai-Tadenuma M, Kasukawa T, Ueda HR (2008) Proof-by-synthesis of the transcriptional logic of mammalian circadian clocks. Nat Cell Biol 10: 1154-1163.
-
(2008)
Nat Cell Biol
, vol.10
, pp. 1154-1163
-
-
Ukai-Tadenuma, M.1
Kasukawa, T.2
Ueda, H.R.3
-
81
-
-
0030989154
-
A circadian enhancer mediates PERdependent mRNA cycling in Drosophila melanogaster
-
Hao H, Allen DL, Hardin PE (1997) A circadian enhancer mediates PERdependent mRNA cycling in Drosophila melanogaster. Mol Cell Biol 17: 3687-3693.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 3687-3693
-
-
Hao, H.1
Allen, D.L.2
Hardin, P.E.3
-
82
-
-
84155171260
-
LIN-42/PERIOD controls cyclical and developmental progression of C elegans molts
-
Monsalve GC, Van Buskirk C, Frand AR (2011) LIN-42/PERIOD controls cyclical and developmental progression of C. elegans molts. Curr Biol 21: 2033-2045.
-
(2011)
Curr Biol
, vol.21
, pp. 2033-2045
-
-
Monsalve, G.C.1
Van Buskirk, C.2
Frand, A.R.3
-
83
-
-
84893445709
-
Extensive oscillatory gene expression during celegans larval development
-
Hendriks GJ, Gaidatzis D, Aeschimann F, Grosshans H (2014) Extensive Oscillatory Gene Expression during C. elegans Larval Development. Mol Cell 53: 380-392.
-
(2014)
Mol Cell
, vol.53
, pp. 380-392
-
-
Hendriks, G.J.1
Gaidatzis, D.2
Aeschimann, F.3
Grosshans, H.4
-
84
-
-
84911902194
-
Adaptive evolution of the circadian gene timeout in insects
-
Gu HF, Xiao JH, Niu LM, Wang B, Ma GC, et al. (2014) Adaptive evolution of the circadian gene timeout in insects. Sci Rep 4: 4212.
-
(2014)
Sci Rep
, vol.4
, pp. 4212
-
-
Gu, H.F.1
Xiao, J.H.2
Niu, L.M.3
Wang, B.4
Ma, G.C.5
-
85
-
-
34147201111
-
The human Tim/Tipin complex coordinates an Intra-S checkpoint response to UV that slows replication fork displacement
-
Unsal-Kacmaz K, Chastain PD, Qu PP, Minoo P, Cordeiro-Stone M, et al. (2007) The human Tim/Tipin complex coordinates an Intra-S checkpoint response to UV that slows replication fork displacement. Mol Cell Biol 27: 3131-3142.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 3131-3142
-
-
Unsal-Kacmaz, K.1
Chastain, P.D.2
Qu, P.P.3
Minoo, P.4
Cordeiro-Stone, M.5
-
86
-
-
77449084056
-
Mammalian TIMELESS is required for ATM-dependent CHK2 activation and G2/M checkpoint control
-
Yang X, Wood PA, Hrushesky WJ (2010) Mammalian TIMELESS is required for ATM-dependent CHK2 activation and G2/M checkpoint control. J Biol Chem 285: 3030-3034.
-
(2010)
J Biol Chem
, vol.285
, pp. 3030-3034
-
-
Yang, X.1
Wood, P.A.2
Hrushesky, W.J.3
-
88
-
-
84873911449
-
Mammalian TIMELESS is involved in period determination and DNA damage-dependent phase advancing of the circadian clock
-
Engelen E, Janssens RC, Yagita K, Smits VA, van der Horst GT, et al. (2013) Mammalian TIMELESS is involved in period determination and DNA damage-dependent phase advancing of the circadian clock. PLoS One 8: e56623.
-
(2013)
PLoS One
, vol.8
, pp. e56623
-
-
Engelen, E.1
Janssens, R.C.2
Yagita, K.3
Smits, V.A.4
Van Der Horst, G.T.5
-
89
-
-
0142052946
-
Requirement of mammalian Timeless for circadian rhythmicity
-
Barnes JW, Tischkau SA, Barnes JA, Mitchell JW, Burgoon PW, et al. (2003) Requirement of mammalian Timeless for circadian rhythmicity. Science 302: 439-442.
-
(2003)
Science
, vol.302
, pp. 439-442
-
-
Barnes, J.W.1
Tischkau, S.A.2
Barnes, J.A.3
Mitchell, J.W.4
Burgoon, P.W.5
-
90
-
-
6544232819
-
A mammalian ortholog of Drosophila timeless, highly expressed in SCN and retina, forms a complex with mPER1
-
Takumi T, Nagamine Y, Miyake S, Matsubara C, Taguchi K, et al. (1999) A mammalian ortholog of Drosophila timeless, highly expressed in SCN and retina, forms a complex with mPER1. Genes Cells 4: 67-75.
-
(1999)
Genes Cells
, vol.4
, pp. 67-75
-
-
Takumi, T.1
Nagamine, Y.2
Miyake, S.3
Matsubara, C.4
Taguchi, K.5
-
91
-
-
34547794241
-
Natural plasticity in circadian rhythms is mediated by reorganization in the molecular clockwork in honeybees
-
Shemesh Y, Cohen M, Bloch G (2007) Natural plasticity in circadian rhythms is mediated by reorganization in the molecular clockwork in honeybees. FASEB J 21: 2304-2311.
-
(2007)
FASEB J
, vol.21
, pp. 2304-2311
-
-
Shemesh, Y.1
Cohen, M.2
Bloch, G.3
-
92
-
-
0033786852
-
Cryptochrome: The second photoactive pigment in the eye and its role in circadian photoreception
-
Sancar A (2000) Cryptochrome: the second photoactive pigment in the eye and its role in circadian photoreception. Annu Rev Biochem 69: 31-67.
-
(2000)
Annu Rev Biochem
, vol.69
, pp. 31-67
-
-
Sancar, A.1
-
93
-
-
50249188277
-
A novel molecular solution for ultraviolet light detection in Caenorhabditis elegans
-
Edwards SL, Charlie NK, Milfort MC, Brown BS, Gravlin CN, et al. (2008) A novel molecular solution for ultraviolet light detection in Caenorhabditis elegans. PLoS Biol 6: e198.
-
(2008)
PLoS Biol
, vol.6
, pp. e198
-
-
Edwards, S.L.1
Charlie, N.K.2
Milfort, M.C.3
Brown, B.S.4
Gravlin, C.N.5
-
94
-
-
48149099744
-
Light-sensitive neurons and channels mediate phototaxis in Celegans
-
Ward A, Liu J, Feng Z, Xu XZ (2008) Light-sensitive neurons and channels mediate phototaxis in C. elegans. Nat Neurosci 11: 916-922.
-
(2008)
Nat Neurosci
, vol.11
, pp. 916-922
-
-
Ward, A.1
Liu, J.2
Feng, Z.3
Xu, X.Z.4
-
96
-
-
33748964104
-
The Caenorhabditis elegans AHR-1 transcription complex controls expression of soluble guanylate cyclase genes in the URX neurons and regulates aggregation behavior
-
Qin H, Zhai Z, Powell-Coffman JA (2006) The Caenorhabditis elegans AHR-1 transcription complex controls expression of soluble guanylate cyclase genes in the URX neurons and regulates aggregation behavior. Dev Biol 298: 606-615.
-
(2006)
Dev Biol
, vol.298
, pp. 606-615
-
-
Qin, H.1
Zhai, Z.2
Powell-Coffman, J.A.3
-
97
-
-
84855281325
-
HIF-1 regulates iron homeostasis in Caenorhabditis elegans by activation and inhibition of genes involved in iron uptake and storage
-
Romney SJ, Newman BS, Thacker C, Leibold EA (2011) HIF-1 regulates iron homeostasis in Caenorhabditis elegans by activation and inhibition of genes involved in iron uptake and storage. PLoS Genet 7: e1002394.
-
(2011)
PLoS Genet
, vol.7
, pp. e1002394
-
-
Romney, S.J.1
Newman, B.S.2
Thacker, C.3
Leibold, E.A.4
-
98
-
-
0027973037
-
Analysis of period mRNA cycling in Drosophila head and body tissues indicates that body oscillators behave differently from head oscillators
-
Hardin PE (1994) Analysis of period mRNA cycling in Drosophila head and body tissues indicates that body oscillators behave differently from head oscillators. Mol Cell Biol 14: 7211-7218.
-
(1994)
Mol Cell Biol
, vol.14
, pp. 7211-7218
-
-
Hardin, P.E.1
-
99
-
-
0030656411
-
Independent photoreceptive circadian clocks throughout Drosophila
-
Plautz JD, Kaneko M, Hall JC, Kay SA (1997) Independent photoreceptive circadian clocks throughout Drosophila. Science 278: 1632-1635.
-
(1997)
Science
, vol.278
, pp. 1632-1635
-
-
Plautz, J.D.1
Kaneko, M.2
Hall, J.C.3
Kay, S.A.4
-
100
-
-
78349307885
-
Simplicity and complexity in the cyanobacterial circadian clock mechanism
-
Dong G, Kim YI, Golden SS (2010) Simplicity and complexity in the cyanobacterial circadian clock mechanism. Curr Opin Genet Dev 20: 619-625.
-
(2010)
Curr Opin Genet Dev
, vol.20
, pp. 619-625
-
-
Dong, G.1
Kim, Y.I.2
Golden, S.S.3
-
101
-
-
84856940017
-
Peroxiredoxin functions as a peroxidase and a regulator and sensor of local peroxides
-
Rhee SG, Woo HA, Kil IS, Bae SH (2012) Peroxiredoxin functions as a peroxidase and a regulator and sensor of local peroxides. J Biol Chem 287: 4403-4410.
-
(2012)
J Biol Chem
, vol.287
, pp. 4403-4410
-
-
Rhee, S.G.1
Woo, H.A.2
Kil, I.S.3
Bae, S.H.4
-
102
-
-
84870951025
-
Circadian regulation of olfaction and an evolutionarily conserved, nontranscriptional marker in Caenorhabditis elegans
-
Olmedo M, O'Neill JS, Edgar RS, Valekunja UK, Reddy AB, et al. (2012) Circadian regulation of olfaction and an evolutionarily conserved, nontranscriptional marker in Caenorhabditis elegans. Proc Natl Acad Sci U S A 109: 20479-20484.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 20479-20484
-
-
Olmedo, M.1
O'neill, J.S.2
Edgar, R.S.3
Valekunja, U.K.4
Reddy, A.B.5
-
103
-
-
23144458473
-
InterProScan: Protein domains identifier
-
Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, et al. (2005) InterProScan: protein domains identifier. Nucleic Acids Res 33: W116-120.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. W116-120
-
-
Quevillon, E.1
Silventoinen, V.2
Pillai, S.3
Harte, N.4
Mulder, N.5
-
104
-
-
55449106027
-
Analysis of gene regulatory networks in the mammalian circadian rhythm
-
Yan J, Wang H, Liu Y, Shao C (2008) Analysis of gene regulatory networks in the mammalian circadian rhythm. PLoS Comput Biol 4: e1000193.
-
(2008)
PLoS Comput Biol
, vol.4
, pp. e1000193
-
-
Yan, J.1
Wang, H.2
Liu, Y.3
Shao, C.4
-
105
-
-
33644863282
-
WormBase: Better software, richer content
-
Schwarz EM, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, et al. (2006) WormBase: better software, richer content. Nucleic Acids Res 34: D475-478.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D475-478
-
-
Schwarz, E.M.1
Antoshechkin, I.2
Bastiani, C.3
Bieri, T.4
Blasiar, D.5
-
106
-
-
33747826650
-
Jpredictor: A versatile tool for the prediction of cis-regulatory elements
-
Fiedler T, Rehmsmeier M (2006) jPREdictor: a versatile tool for the prediction of cis-regulatory elements. Nucleic Acids Res 34: W546-550.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. W546-550
-
-
Fiedler, T.1
Rehmsmeier, M.2
-
107
-
-
0035535942
-
Comparative studies on the phylogeny and systematics of the rhabditidae (nematoda)
-
Sudhaus W, Fitch D (2001) Comparative studies on the phylogeny and systematics of the rhabditidae (nematoda). J Nematol 33: 1-70.
-
(2001)
J Nematol
, vol.33
, pp. 1-70
-
-
Sudhaus, W.1
Fitch, D.2
|