Characterization of Drosophila and Caenorhabditis elegans NXF-like-factors, putative homologs of mammalian NXF

Gene

Volumn 400, Issue 1-2, 2007, Pages 122-130

  Ooe, Norihisa ^a   Saito, Koichi ^a   Oeda, Kenji ^a   Nakatuka, Iwao ^a   Kaneko, Hideo ^a  

^a SUMITOMO CHEMICAL CO LTD   (Japan)

Author keywords

bHLH; Dys; NXFL; Ortholog; PAS; Transcription factor

Indexed keywords

COMPLEMENTARY DNA; HYPOXIA INDUCIBLE FACTOR 1BETA; NXF LIKE FACTOR; NXF PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CAENORHABDITIS ELEGANS; DNA DETERMINATION; DROSOPHILA MELANOGASTER; EXON; GENETIC CONSERVATION; INTRON; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTORS; CAENORHABDITIS ELEGANS PROTEINS; CARRIER PROTEINS; CELLS, CULTURED; DROSOPHILA PROTEINS; HUMANS; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, AMINO ACID; TRANS-ACTIVATION (GENETICS);

ANIMALIA; CAENORHABDITIS ELEGANS; MAMMALIA;

EID: 34548016552     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.06.005     Document Type: Article

References (21)

1. Celniker S.E., and Rubin G.M. The Drosophila melanogaster genome. Annu. Rev. Genomics Hum. Genet. 4 (2003) 89-117
2. Chrast R., Scott H.S., Chen H., Kudoh J., Rossier C., Minoshima S., Wang Y., Shimizu N., and Antonarakis S.E. Cloning of two human homologs of the Drosophila single-minded gene SIM1 on chromosome 6q and SIM2 on 21q within the Down syndrome chromosomal region. Genome Res. 7 (1997) 615-624
3. Coumailleau P. bHLH/PAS proteins: essential transcription factors involved in organism response to environmental stress and in developmental processes. Rec. Res. Dev. Mol. Cell. Biol. 3 (2002) 113-153
4. Crews S.T., and Fan C.M. Remembrance of things PAS: regulation of development by bHLH-PAS proteins. Curr. Opin. Genet. Dev. 9 (1999) 580-587
5. Crews S.T., Thomas J.B., and Goodman C.S. The Drosophila single-minded gene encodes a nuclear protein with sequence similarity to the per gene product. Cell 52 (1988) 143-151
6. Duncan D.M., Burgess E.A., and Duncan I. Control of distal antennal identity and tarsal development in Drosophila by spineless-aristapedia, a homolog of the mammalian dioxin receptor. Genes Dev. 12 (1998) 1290-1303
7. Ema M., Matsushita N., Sogawa K., Ariyama T., Inazawa J., Nemoto T., Ota M., Oshimura M., and Fujii-Kuriyama Y. Human arylhydrocarbon receptor: functional expression and chromosomal assignment to 7p21. J. Biochem. (Tokyo) 116 (1994) 845-851
8. Emmons R.B., Duncan D., Estes P.A., Kiefel P., Mosher J.T., Sonnenfeld M., Ward M.P., Duncan I., and Crews S.T. The spineless-aristapedia and tango bHLH-PAS proteins interact to control antennal and tarsal development in Drosophila. Development 126 (1999) 3937-3945
9. Felix M.A. Genomes: a helpful cousin for our favourite worm. Curr. Biol. 14 (2004) 75-77
10. Gu Y.Z., Hogenesch J.B., and Bradfield C.A. The PAS superfamily: sensors of environmental and developmental signals. Annu. Rev. Pharmacol. Toxicol. 40 (2000) 519-561
11. Hoffman E.C., Reyes H., Chu F.F., Sander F., Conley L.H., Brooks B.A., and Hankinson O. Cloning of a factor required for activity of the Ah (dioxin) receptor. Science 252 (1991) 954-958
12. Huang Z.J., Edery I., and Rosbash M. PAS is a dimerization domain common to Drosophila period and several transcription factors. Nature 364 (1993) 259-262
13. Jiang L., and Crews S.T. The Drosophila dysfusion basic helix-loop-helix (bHLH)-PAS gene controls tracheal fusion and levels of the trachealess bHLH-PAS protein. Mol. Cell. Biol. 23 (2003) 5625-5637
14. Kewley R.J., Whitelaw M.L., and Chapman-Smith A. The mammalian basic helix-loop-helix/PAS family of transcriptional regulators. Int. J. Biochem. Cell Biol. 36 (2004) 189-204
15. Kumar M.B., Ramadoss P., Reen R.K., Vanden Heuvel J.P., and Perdew G.H. The Q-rich subdomain of the human Ah receptor transactivation domain is required for dioxin-mediated transcriptional activity. J. Biol. Chem. 276 (2001) 42302-42310
16. Nebert D.W., Nelson D.R., Coon M.J., Estabrook R.W., Feyereisen R., Fujii-Kuriyama Y., Gonzalez F.J., Guengerich F.P., Gunsalus I.C., and Johnson E.F. The P450 superfamily: update on new sequences, gene mapping, and recommended nomenclature. DNA Cell Biol. 10 (1991) 1-14
17. Ooe N., Saito K., Mikami N., Nakatuka I., and Kaneko H. Identification of a novel basic helix-loop-helix-PAS factor, NXF, reveals a Sim2 competitive, positive regulatory role in dendritic-cytoskeleton modulator drebrin gene expression. Mol. Cell. Biol. 24 (2004) 608-616
18. Powell-Coffman J.A., Bradfield C.A., and Wood W.B. Caenorhabditis elegans orthologs of the aryl hydrocarbon receptor and its heterodimerization partner the aryl hydrocarbon receptor nuclear translocator. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 2844-2849
19. Sogawa K., and Fujii-Kuriyama Y. Ah receptor, a novel ligand-activated transcription factor. J. Biochem. (Tokyo). 122 (1997) 1075-1079
20. Sonnenfeld M., Ward M., Nystrom G., Mosher J., Stahl S., and Crews S. The Drosophila tango gene encodes a bHLH-PAS protein that is orthologous to mammalian Arnt and controls CNS midline and tracheal development. Development 124 (1997) 4571-4582
21. Summers M.D., and Smith G.E. A manual of methods for baculovirus vectors and insect cell culture procedures. Tex. Agric. Exp. Stn. Bull. 1555 (1987) 1-40