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Volumn 7, Issue 1, 2014, Pages

Identification of co-expression gene networks, regulatory genes and pathways for obesity based on adipose tissue RNA Sequencing in a porcine model

Author keywords

Gene co expression networks; Obesity; Osteoporosis; Regulatory genes; RNA sequencing; Systems biology

Indexed keywords

B LYMPHOCYTE RECEPTOR;

EID: 84910627952     PISSN: None     EISSN: 17558794     Source Type: Journal    
DOI: 10.1186/1755-8794-7-57     Document Type: Article
Times cited : (93)

References (111)
  • 2
    • 2942650969 scopus 로고    scopus 로고
    • Adipose Tissue as an Endocrine Organ
    • 15181022
    • Adipose Tissue as an Endocrine Organ. Kershaw EE, Flier JS, J Clin Endocrinol Metab 2004 89 6 2548 2556 10.1210/jc.2004-0395 15181022
    • (2004) J Clin Endocrinol Metab , vol.89 , Issue.6 , pp. 2548-2556
    • Kershaw, E.E.1    Flier, J.S.2
  • 4
    • 38949085542 scopus 로고    scopus 로고
    • The Development of Porcine Models of Obesity and the Metabolic Syndrome
    • 18203910
    • The Development of Porcine Models of Obesity and the Metabolic Syndrome. Spurlock ME, Gabler NK, J Nutr 2008 138 2 397 402 18203910
    • (2008) J Nutr , vol.138 , Issue.2 , pp. 397-402
    • Spurlock, M.E.1    Gabler, N.K.2
  • 5
    • 84944883864 scopus 로고    scopus 로고
    • Using commercial pigs in the search for genes behind human obesity
    • Using commercial pigs in the search for genes behind human obesity. Rocha D, Plastow G, Nat Rev Genet 2005 6 3
    • (2005) Nat Rev Genet , vol.6 , Issue.3
    • Rocha, D.1    Plastow, G.2
  • 6
    • 84906226347 scopus 로고    scopus 로고
    • Systems genetics of obesity in an F2 pig model by genome-wide association, genetic network and pathway analyses
    • 25071839
    • Systems genetics of obesity in an F2 pig model by genome-wide association, genetic network and pathway analyses. Kogelman LJA, Pant SD, Fredholm M, Kadarmideen HN, Front Genet 2014 5 214 25071839
    • (2014) Front Genet , vol.5 , pp. 214
    • Kogelman, L.J.A.1    Pant, S.D.2    Fredholm, M.3    Kadarmideen, H.N.4
  • 8
    • 80155182174 scopus 로고    scopus 로고
    • Developments in Obesity Genetics in the Era of Genome-Wide Association Studies
    • 22056736
    • Developments in Obesity Genetics in the Era of Genome-Wide Association Studies. Day FR, Loos RJF, J Nutrigenet Nutrigenomics 2011 4 4 222 238 10.1159/000332158 22056736
    • (2011) J Nutrigenet Nutrigenomics , vol.4 , Issue.4 , pp. 222-238
    • Day, F.R.1    Loos, R.J.F.2
  • 9
    • 80052488140 scopus 로고    scopus 로고
    • Transcriptome: Connecting the Genome to Gene Function
    • Transcriptome: Connecting the Genome to Gene Function. Adams JU, Nat Educ 2008 1 1 195
    • (2008) Nat Educ , vol.1 , Issue.1 , pp. 195
    • Adams, J.U.1
  • 10
    • 0036405278 scopus 로고    scopus 로고
    • DNA microarray technology: Devices, systems, and applications
    • 12117754
    • DNA microarray technology: devices, systems, and applications. Heller MJ, Annu Rev Biomed Eng 2002 4 129 153 10.1146/annurev.bioeng.4.020702.153438 12117754
    • (2002) Annu Rev Biomed Eng , vol.4 , pp. 129-153
    • Heller, M.J.1
  • 11
    • 0036899286 scopus 로고    scopus 로고
    • From patterns to pathways: Gene expression data analysis comes of age
    • 12454645
    • From patterns to pathways: gene expression data analysis comes of age. Slonim DK, Nat Genet 2002 32 502 508 10.1038/ng1033 12454645
    • (2002) Nat Genet , vol.32 , pp. 502-508
    • Slonim, D.K.1
  • 12
    • 58149330480 scopus 로고    scopus 로고
    • Using gene expression to investigate the genetic basis of complex disorders
    • 18852201
    • Using gene expression to investigate the genetic basis of complex disorders. Nica AC, Dermitzakis ET, Hum Mol Genet 2008 17 R2 129 R134 10.1093/hmg/ddn285 18852201
    • (2008) Hum Mol Genet , vol.17 , Issue.R2 , pp. 18129-R134
    • Nica, A.C.1    Dermitzakis, E.T.2
  • 13
    • 84905574771 scopus 로고    scopus 로고
    • Genomics to systems biology in animal and veterinary sciences: Progress, lessons and opportunities
    • Genomics to systems biology in animal and veterinary sciences: progress, lessons and opportunities. Kadarmideen HN, Livest Sci 2014 116 232 248
    • (2014) Livest Sci , vol.116 , pp. 232-248
    • Kadarmideen, H.N.1
  • 14
    • 77951274224 scopus 로고    scopus 로고
    • Weighted Gene Coexpression Network Analysis: State of the Art
    • 20309759
    • Weighted Gene Coexpression Network Analysis: State of the Art. Zhao W, Langfelder P, Fuller T, Dong J, Li A, Hovarth S, J Biopharm Stat 2010 20 2 281 300 10.1080/10543400903572753 20309759
    • (2010) J Biopharm Stat , vol.20 , Issue.2 , pp. 281-300
    • Zhao, W.1    Langfelder, P.2    Fuller, T.3    Dong, J.4    Li, A.5    Hovarth, S.6
  • 15
    • 84901635998 scopus 로고    scopus 로고
    • Building gene co-expression networks using transcriptomics data for systems biology investigations: Comparison of methods using microarray data
    • 23144540
    • Building gene co-expression networks using transcriptomics data for systems biology investigations: Comparison of methods using microarray data. Kadarmideen HN, Watson-Haigh N, Bioinformation 2012 8 18 855 861 10.6026/97320630008855 23144540
    • (2012) Bioinformation , vol.8 , Issue.18 , pp. 855-861
    • Kadarmideen, H.N.1    Watson-Haigh, N.2
  • 16
    • 60149110901 scopus 로고    scopus 로고
    • Module networks revisited: Computational assessment and prioritization of model predictions
    • 19136553
    • Module networks revisited: computational assessment and prioritization of model predictions. Joshi A, De Smet R, Marchal K, Van de Peer Y, Michoel T, Bioinformatics 2009 25 4 490 496 10.1093/bioinformatics/btn658 19136553
    • (2009) Bioinformatics , vol.25 , Issue.4 , pp. 490-496
    • Joshi, A.1    De Smet, R.2    Marchal, K.3    Van De Peer, Y.4    Michoel, T.5
  • 17
    • 78650156263 scopus 로고    scopus 로고
    • Systems biology of ovine intestinal parasite resistance: Disease gene modules and biomarkers
    • 21072409
    • Systems biology of ovine intestinal parasite resistance: disease gene modules and biomarkers. Kadarmideen HN, Watson-Haigh NS, Andronicos NM, Mol Biosyst 2011 7 1 235 246 10.1039/c0mb00190b 21072409
    • (2011) Mol Biosyst , vol.7 , Issue.1 , pp. 235-246
    • Kadarmideen, H.N.1    Watson-Haigh, N.S.2    Andronicos, N.M.3
  • 21
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics
    • 19015660
    • RNA-Seq: a revolutionary tool for transcriptomics. Wang Z, Gerstein M, Snyder M, Nat Rev Genet 2009 10 1 57 63 10.1038/nrg2484 19015660
    • (2009) Nat Rev Genet , vol.10 , Issue.1 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 22
    • 84863509940 scopus 로고    scopus 로고
    • Utilizing RNA-Seq Data for De-Novo Coexpression Network Inference
    • 22556371
    • Utilizing RNA-Seq Data for De-Novo Coexpression Network Inference. Iancu OD, Kawane S, Bottomly D, Searles R, Hitzemann R, McWeeney S, Bioinformatics 2012 28 12 1592 1597 10.1093/bioinformatics/bts245 22556371
    • (2012) Bioinformatics , vol.28 , Issue.12 , pp. 1592-1597
    • Iancu, O.D.1    Kawane, S.2    Bottomly, D.3    Searles, R.4    Hitzemann, R.5    McWeeney, S.6
  • 24
    • 84856083581 scopus 로고    scopus 로고
    • Analysis of Transcriptome Complexity Through RNA Sequencing in Normal and Failing Murine Hearts
    • 22034492
    • Analysis of Transcriptome Complexity Through RNA Sequencing in Normal and Failing Murine Hearts. Lee J-H, Gao C, Peng G, Greer C, Ren S, Wang Y, Xiao X, Circ Res 2011 109 12 1332 1341 10.1161/CIRCRESAHA.111.249433 22034492
    • (2011) Circ Res , vol.109 , Issue.12 , pp. 1332-1341
    • Lee, J.-H.1    Gao, C.2    Peng, G.3    Greer, C.4    Ren, S.5    Wang, Y.6    Xiao, X.7
  • 25
    • 84874165110 scopus 로고    scopus 로고
    • Transcriptome analysis of Inbred Long Sleep and Inbred Short Sleep mice
    • 23433184
    • Transcriptome analysis of Inbred Long Sleep and Inbred Short Sleep mice. Darlington TM, Ehringer MA, Larson C, Phang TL, Radcliffe RA, Genes Brain Behav 2013 12 2 263 274 10.1111/gbb.12018 23433184
    • (2013) Genes Brain Behav , vol.12 , Issue.2 , pp. 263-274
    • Darlington, T.M.1    Ehringer, M.A.2    Larson, C.3    Phang, T.L.4    Radcliffe, R.A.5
  • 27
    • 66449116353 scopus 로고    scopus 로고
    • Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks
    • 19422680
    • Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks. Michoel T, De Smet R, Joshi A, Van de Peer Y, Marchal K, BMC Syst Biol 2009 3 49 10.1186/1752-0509-3-49 19422680
    • (2009) BMC Syst Biol , vol.3 , pp. 49
    • Michoel, T.1    De Smet, R.2    Joshi, A.3    Van De Peer, Y.4    Marchal, K.5
  • 28
    • 72949086408 scopus 로고    scopus 로고
    • Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development
    • 19763340
    • Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development. Vermeirssen V, Joshi A, Michoel T, Bonnet E, Casneuf T, Van de Peer Y, Mol Biosyst 2009 5 12 1817 1830 10.1039/b908108a 19763340
    • (2009) Mol Biosyst , vol.5 , Issue.12 , pp. 1817-1830
    • Vermeirssen, V.1    Joshi, A.2    Michoel, T.3    Bonnet, E.4    Casneuf, T.5    Van De Peer, Y.6
  • 29
    • 77956308091 scopus 로고    scopus 로고
    • Module Network Inference from a Cancer Gene Expression Data Set Identifies MicroRNA Regulated Modules
    • 20418949
    • Module Network Inference from a Cancer Gene Expression Data Set Identifies MicroRNA Regulated Modules. Bonnet E, Tatari M, Joshi A, Michoel T, Marchal K, Berx G, Van de Peer Y, PLoS One 2010 5 4 10162 10.1371/journal.pone.0010162 20418949
    • (2010) PLoS One , vol.5 , Issue.4 , pp. 510162
    • Bonnet, E.1    Tatari, M.2    Joshi, A.3    Michoel, T.4    Marchal, K.5    Berx, G.6    Van De Peer, Y.7
  • 30
    • 78049413383 scopus 로고    scopus 로고
    • A decade of systems biology
    • 20604711
    • A decade of systems biology. Chuang HY, Hofree M, Ideker T, Annu Rev Cell Dev Biol 2010 26 721 744 10.1146/annurev-cellbio-100109-104122 20604711
    • (2010) Annu Rev Cell Dev Biol , vol.26 , pp. 721-744
    • Chuang, H.Y.1    Hofree, M.2    Ideker, T.3
  • 31
    • 65649126066 scopus 로고    scopus 로고
    • Transcript length bias in RNA-seq data confounds systems biology
    • 19371405
    • Transcript length bias in RNA-seq data confounds systems biology. Oshlack A, Wakefield M, Biol Direct 2009 4 1 14 10.1186/1745-6150-4-14 19371405
    • (2009) Biol Direct , vol.4 , Issue.1 , pp. 14
    • Oshlack, A.1    Wakefield, M.2
  • 32
    • 0348230958 scopus 로고    scopus 로고
    • Obesity is associated with macrophage accumulation in adipose tissue
    • 14679176
    • Obesity is associated with macrophage accumulation in adipose tissue. Weisberg SP, McCann D, Desai M, Rosenbaum M, Leibel RL, Ferrante AW Jr, J Clin Invest 2003 112 12 1796 1808 10.1172/JCI200319246 14679176
    • (2003) J Clin Invest , vol.112 , Issue.12 , pp. 1796-1808
    • Weisberg, S.P.1    McCann, D.2    Desai, M.3    Rosenbaum, M.4    Leibel, R.L.5    Ferrante, A.W.6
  • 33
    • 84883494045 scopus 로고    scopus 로고
    • The immune cells in adipose tissue
    • 24003919
    • The immune cells in adipose tissue. Ferrante AW, Diabetes Obes Metab 2013 15 s3 34 38 10.1111/dom.12154 24003919
    • (2013) Diabetes Obes Metab , vol.15 , Issue.S3 , pp. 34-38
    • Ferrante, A.W.1
  • 34
    • 84876553009 scopus 로고    scopus 로고
    • The Role of the Immune System in Obesity and Insulin Resistance
    • The Role of the Immune System in Obesity and Insulin Resistance. Patel PS, Buras ED, Balasubramanyam A, J Obes 2013 2013 9
    • (2013) J Obes , vol.2013 , pp. 9
    • Patel, P.S.1    Buras, E.D.2    Balasubramanyam, A.3
  • 35
    • 33749354009 scopus 로고    scopus 로고
    • Osteoporosis, inflammation and ageing
    • 16271143
    • Osteoporosis, inflammation and ageing. Ginaldi L, Di Benedetto M, De Martinis M, Immun Ageing 2005 2 1 14 10.1186/1742-4933-2-14 16271143
    • (2005) Immun Ageing , vol.2 , Issue.1 , pp. 14
    • Ginaldi, L.1    Di Benedetto, M.2    De Martinis, M.3
  • 36
    • 0029961204 scopus 로고    scopus 로고
    • The function of adipocytes in the bone marrow stroma: An update
    • 8922639
    • The function of adipocytes in the bone marrow stroma: an update. Gimble JM, Robinson CE, Wu X, Kelly KA, Bone 1996 19 5 421 428 10.1016/S8756-3282(96)00258-X 8922639
    • (1996) Bone , vol.19 , Issue.5 , pp. 421-428
    • Gimble, J.M.1    Robinson, C.E.2    Wu, X.3    Kelly, K.A.4
  • 37
    • 84910620673 scopus 로고    scopus 로고
    • The bone-fat interface: Basic and clinical implications of marrow adiposity
    • in press
    • The bone-fat interface: basic and clinical implications of marrow adiposity. Devlin MJ, Rosen CJ, Lancet Diabetes Endocrinol in press
    • Lancet Diabetes Endocrinol
    • Devlin, M.J.1    Rosen, C.J.2
  • 38
    • 84925549112 scopus 로고    scopus 로고
    • The paradigm of IL-6: From basic science to medicine
    • 12110143
    • The paradigm of IL-6: from basic science to medicine. Naka T, Nishimoto N, Kishimoto T, Arthritis Res 2002 4 Suppl 3 233 S242 10.1186/ar565 12110143
    • (2002) Arthritis Res , vol.4 , pp. 19233-S242
    • Naka, T.1    Nishimoto, N.2    Kishimoto, T.3
  • 39
    • 2342619696 scopus 로고    scopus 로고
    • Interactions of Interleukin-6 Promoter Polymorphisms with Dietary and Lifestyle Factors and Their Association with Bone Mass in Men and Women from the Framingham Osteoporosis Study
    • 15005841
    • Interactions of Interleukin-6 Promoter Polymorphisms With Dietary and Lifestyle Factors and Their Association With Bone Mass in Men and Women From the Framingham Osteoporosis Study. Ferrari SL, Karasik D, Liu J, Karamohamed S, Herbert AG, Cupples LA, Kiel DP, J Bone Miner Res 2004 19 4 552 559 10.1359/JBMR.040103 15005841
    • (2004) J Bone Miner Res , vol.19 , Issue.4 , pp. 552-559
    • Ferrari, S.L.1    Karasik, D.2    Liu, J.3    Karamohamed, S.4    Herbert, A.G.5    Cupples, L.A.6    Kiel, D.P.7
  • 40
    • 0031214408 scopus 로고    scopus 로고
    • Genes and osteoporosis
    • 18406809
    • Genes and osteoporosis. Grant SFA, Ralston SH, Trends Endocrinol Metab 1997 8 6 232 236 10.1016/S1043-2760(97)00058-1 18406809
    • (1997) Trends Endocrinol Metab , vol.8 , Issue.6 , pp. 232-236
    • Grant, S.F.A.1    Ralston, S.H.2
  • 41
    • 84871494098 scopus 로고    scopus 로고
    • In Osteoporosis, differentiation of mesenchymal stem cells (MSCs) improves bone marrow adipogenesis
    • 23283437
    • In Osteoporosis, differentiation of mesenchymal stem cells (MSCs) improves bone marrow adipogenesis. Pino AM, Rosen CJ, Rodríguez JP, Biol Res 2012 45 279 287 10.4067/S0716-97602012000300009 23283437
    • (2012) Biol Res , vol.45 , pp. 279-287
    • Pino, A.M.1    Rosen, C.J.2    Rodríguez, J.P.3
  • 42
    • 52749092211 scopus 로고    scopus 로고
    • Transcription factor PU.1 is expressed in white adipose and inhibits adipocyte differentiation
    • 18463231
    • Transcription factor PU.1 is expressed in white adipose and inhibits adipocyte differentiation. Wang F, Tong Q, Am J Physiol Cell Physiol 2008 295 1 213 C220 10.1152/ajpcell.00422.2007 18463231
    • (2008) Am J Physiol Cell Physiol , vol.295 , Issue.1 , pp. 3213-C220
    • Wang, F.1    Tong, Q.2
  • 46
    • 34247854803 scopus 로고    scopus 로고
    • Diet-Induced Obese Mice Have Increased Mortality and Altered Immune Responses When Infected with Influenza Virus
    • 17449587
    • Diet-Induced Obese Mice Have Increased Mortality and Altered Immune Responses When Infected with Influenza Virus. Smith AG, Sheridan PA, Harp JB, Beck MA, J Nutr 2007 137 5 1236 1243 17449587
    • (2007) J Nutr , vol.137 , Issue.5 , pp. 1236-1243
    • Smith, A.G.1    Sheridan, P.A.2    Harp, J.B.3    Beck, M.A.4
  • 47
    • 60849138419 scopus 로고    scopus 로고
    • Are Natural Killer Cells Protecting the Metabolically Healthy Obese Patient?
    • 19238145
    • Are Natural Killer Cells Protecting the Metabolically Healthy Obese Patient? Lynch LA, O'Connell JM, Kwasnik AK, Cawood TJ, O'Farrelly C, O'Shea DB, Obesity 2009 17 3 601 605 10.1038/oby.2008.565 19238145
    • (2009) Obesity , vol.17 , Issue.3 , pp. 601-605
    • Lynch, L.A.1    O'Connell, J.M.2    Kwasnik, A.K.3    Cawood, T.J.4    O'Farrelly, C.5    O'Shea, D.B.6
  • 48
    • 84857985148 scopus 로고    scopus 로고
    • The cellular and signaling networks linking the immune system and metabolism in disease
    • 22395709
    • The cellular and signaling networks linking the immune system and metabolism in disease. Osborn O, Olefsky JM, Nat Med 2012 18 3 363 374 10.1038/nm.2627 22395709
    • (2012) Nat Med , vol.18 , Issue.3 , pp. 363-374
    • Osborn, O.1    Olefsky, J.M.2
  • 49
    • 1642315558 scopus 로고    scopus 로고
    • The intricate interface between immune system and metabolism
    • 15039046
    • The intricate interface between immune system and metabolism. Matarese G, La Cava A, Trends Immunol 2004 25 4 193 200 10.1016/j.it.2004.02.009 15039046
    • (2004) Trends Immunol , vol.25 , Issue.4 , pp. 193-200
    • Matarese, G.1    La Cava, A.2
  • 50
    • 0035342124 scopus 로고    scopus 로고
    • Obesity and immune function relationships
    • 12119664
    • Obesity and immune function relationships. Martí A, Marcos A, Martínez JA, Obes Rev 2001 2 2 131 140 10.1046/j.1467-789x.2001.00025.x 12119664
    • (2001) Obes Rev , vol.2 , Issue.2 , pp. 131-140
    • Martí, A.1    Marcos, A.2    Martínez, J.A.3
  • 51
    • 0347985272 scopus 로고    scopus 로고
    • Obesity-induced inflammatory changes in adipose tissue
    • 14679172
    • Obesity-induced inflammatory changes in adipose tissue. Wellen KE, Hotamisligil G, J Clin Invest 2003 112 12 1785 1788 10.1172/JCI20514 14679172
    • (2003) J Clin Invest , vol.112 , Issue.12 , pp. 1785-1788
    • Wellen, K.E.1    Hotamisligil, G.2
  • 56
    • 84995808739 scopus 로고    scopus 로고
    • Proprotein convertases in high-density lipoprotein metabolism
    • 24252729
    • Proprotein convertases in high-density lipoprotein metabolism. Choi S, Korstanje R, Biomark Res 2013 1 1 1 8 10.1186/2050-7771-1-1 24252729
    • (2013) Biomark Res , vol.1 , Issue.1 , pp. 1-8
    • Choi, S.1    Korstanje, R.2
  • 58
    • 84860717143 scopus 로고    scopus 로고
    • Parallel Selection Mapping Using Artificially Selected Mice Reveals Body Weight Control Loci
    • 22445301
    • Parallel Selection Mapping Using Artificially Selected Mice Reveals Body Weight Control Loci. Chan Yingguang F, Jones Felicity C, McConnell E, Bryk J, Bünger L, Tautz D, Curr Biol 2012 22 9 794 800 10.1016/j.cub.2012.03.011 22445301
    • (2012) Curr Biol , vol.22 , Issue.9 , pp. 794-800
    • Chan Yingguang, F.1    Jones Felicity, C.2    McConnell, E.3    Bryk, J.4    Bünger, L.5    Tautz, D.6
  • 60
    • 84891765369 scopus 로고    scopus 로고
    • Microfibrillar-associated protein 5 is linked with markers of obesity-related extracellular matrix remodeling and inflammation
    • 23154620
    • Microfibrillar-associated protein 5 is linked with markers of obesity-related extracellular matrix remodeling and inflammation. Vaittinen M, Kolehmainen M, Schwab U, Uusitupa M, Pulkkinen L, Nutr Diabetes 2011 1 8 15 10.1038/nutd.2011.10 23154620
    • (2011) Nutr Diabetes , vol.1 , Issue.8 , pp. 515
    • Vaittinen, M.1    Kolehmainen, M.2    Schwab, U.3    Uusitupa, M.4    Pulkkinen, L.5
  • 61
    • 80052541823 scopus 로고    scopus 로고
    • Polyamines Are Increased in Obese Children and Are Related to Markers of Oxidative/Nitrosative Stress and Angiogenesis
    • Polyamines Are Increased in Obese Children and Are Related to Markers of Oxidative/Nitrosative Stress and Angiogenesis. Codoñer-Franch P, Tavárez-Alonso S, Murria-Estal R, Herrera-Martín G, Alonso-Iglesias E, J Clin Endocrinol Metab 2011 96 9 2821 2825 10.1210/jc.2011-0531 21697248
    • (2011) J Clin Endocrinol Metab , vol.96 , Issue.9 , pp. 2821-2825
    • Codoñer-Franch, P.1    Tavárez-Alonso, S.2    Murria-Estal, R.3    Herrera-Martín, G.4    Alonso-Iglesias, E.5
  • 63
    • 78650285324 scopus 로고    scopus 로고
    • Nol9 is a novel polynucleotide 5′kinase involved in ribosomal RNA processing
    • 21063389
    • Nol9 is a novel polynucleotide 5′kinase involved in ribosomal RNA processing. Heindl K, Martinez J, EMBO J 2010 29 24 4161 4171 10.1038/emboj.2010.275 21063389
    • (2010) EMBO J , vol.29 , Issue.24 , pp. 4161-4171
    • Heindl, K.1    Martinez, J.2
  • 64
    • 38949140543 scopus 로고    scopus 로고
    • Influence of obesity and insulin sensitivity on insulin signaling genes in human omental and subcutaneous adipose tissue
    • 17986714
    • Influence of obesity and insulin sensitivity on insulin signaling genes in human omental and subcutaneous adipose tissue. MacLaren R, Cui W, Simard S, Cianflone K, J Lipid Res 2008 49 2 308 323 17986714
    • (2008) J Lipid Res , vol.49 , Issue.2 , pp. 308-323
    • Maclaren, R.1    Cui, W.2    Simard, S.3    Cianflone, K.4
  • 65
    • 84897448946 scopus 로고    scopus 로고
    • Defects in TLR3 expression and RNase L activation lead to decreased MnSOD expression and insulin resistance in muscle cells of obese people
    • 24651439
    • Defects in TLR3 expression and RNase L activation lead to decreased MnSOD expression and insulin resistance in muscle cells of obese people. Fabre O, Breuker C, Amouzou C, Salehzada T, Kitzmann M, Mercier J, Bisbal C, Cell Death Dis 2014 5 1136 10.1038/cddis.2014.104 24651439
    • (2014) Cell Death Dis , vol.5 , pp. 51136
    • Fabre, O.1    Breuker, C.2    Amouzou, C.3    Salehzada, T.4    Kitzmann, M.5    Mercier, J.6    Bisbal, C.7
  • 67
    • 34548442971 scopus 로고    scopus 로고
    • Weighted gene coexpression network analysis strategies applied to mouse weight
    • 17668265
    • Weighted gene coexpression network analysis strategies applied to mouse weight. Fuller T, Ghazalpour A, Aten J, Drake T, Lusis A, Horvath S, Mamm Genome 2007 18 6-7 463 472 17668265
    • (2007) Mamm Genome , vol.18 , Issue.6-7 , pp. 463-472
    • Fuller, T.1    Ghazalpour, A.2    Aten, J.3    Drake, T.4    Lusis, A.5    Horvath, S.6
  • 68
    • 84894545130 scopus 로고    scopus 로고
    • Interferon-Inducible Protein IFI35 Negatively Regulates RIG-I Antiviral Signaling and Supports Vesicular Stomatitis Virus Replication
    • 24371060
    • Interferon-Inducible Protein IFI35 Negatively Regulates RIG-I Antiviral Signaling and Supports Vesicular Stomatitis Virus Replication. Das A, Dinh PX, Panda D, Pattnaik AK, J Virol 2014 88 6 3103 3113 10.1128/JVI.03202-13 24371060
    • (2014) J Virol , vol.88 , Issue.6 , pp. 3103-3113
    • Das, A.1    Dinh, P.X.2    Panda, D.3    Pattnaik, A.K.4
  • 69
    • 84872170016 scopus 로고    scopus 로고
    • Innate immune activation in obesity
    • 23068074
    • Innate immune activation in obesity. Lumeng CN, Mol Aspects Med 2013 34 1 12 29 10.1016/j.mam.2012.10.002 23068074
    • (2013) Mol Aspects Med , vol.34 , Issue.1 , pp. 12-29
    • Lumeng, C.N.1
  • 70
    • 0036486763 scopus 로고    scopus 로고
    • Role of chemokines in the biology of natural killer cells
    • 11818437
    • Role of chemokines in the biology of natural killer cells. Robertson MJ, J Leukoc Biol 2002 71 2 173 183 11818437
    • (2002) J Leukoc Biol , vol.71 , Issue.2 , pp. 173-183
    • Robertson, M.J.1
  • 71
    • 73849125378 scopus 로고    scopus 로고
    • CCL5 promotes macrophage recruitment and survival in human adipose tissue
    • 19893003
    • CCL5 promotes macrophage recruitment and survival in human adipose tissue. Keophiphath M, Rouault C, Divoux A, Clement K, Lacasa D, Arterioscler Thromb Vasc Biol 2010 30 1 39 45 10.1161/ATVBAHA.109.197442 19893003
    • (2010) Arterioscler Thromb Vasc Biol , vol.30 , Issue.1 , pp. 39-45
    • Keophiphath, M.1    Rouault, C.2    Divoux, A.3    Clement, K.4    Lacasa, D.5
  • 72
    • 33847334257 scopus 로고    scopus 로고
    • RANTES (Regulated on Activation, Normal T Cell Expressed and Secreted), Inflammation, Obesity, and the Metabolic Syndrome
    • 17325252
    • RANTES (Regulated on Activation, Normal T Cell Expressed and Secreted), Inflammation, Obesity, and the Metabolic Syndrome. Matter CM, Handschin C, Circulation 2007 115 8 946 948 10.1161/CIRCULATIONAHA.106.685230 17325252
    • (2007) Circulation , vol.115 , Issue.8 , pp. 946-948
    • Matter, C.M.1    Handschin, C.2
  • 73
    • 0032964798 scopus 로고    scopus 로고
    • Autoantigens IA-2 and GAD in Type i (insulin-dependent) diabetes
    • 10027571
    • Autoantigens IA-2 and GAD in Type I (insulin-dependent) diabetes. Leslie RDG, Atkinson MA, Notkins AL, Diabetologia 1999 42 1 3 14 10.1007/s001250051105 10027571
    • (1999) Diabetologia , vol.42 , Issue.1 , pp. 3-14
    • Leslie, R.D.G.1    Atkinson, M.A.2    Notkins, A.L.3
  • 75
    • 72049114437 scopus 로고    scopus 로고
    • The skinny on fat: Lipolysis and fatty acid utilization in adipocytes
    • 19796963
    • The skinny on fat: lipolysis and fatty acid utilization in adipocytes. Ahmadian M, Duncan RE, Sul HS, Trends Endocrinol Metab 2009 20 9 424 428 10.1016/j.tem.2009.06.002 19796963
    • (2009) Trends Endocrinol Metab , vol.20 , Issue.9 , pp. 424-428
    • Ahmadian, M.1    Duncan, R.E.2    Sul, H.S.3
  • 76
    • 77649180245 scopus 로고    scopus 로고
    • Lipolysis in adipocytes
    • 20025992
    • Lipolysis in adipocytes. Ahmadian M, Wang Y, Sul HS, Int J Biochem Cell Biol 2010 42 5 555 559 10.1016/j.biocel.2009.12.009 20025992
    • (2010) Int J Biochem Cell Biol , vol.42 , Issue.5 , pp. 555-559
    • Ahmadian, M.1    Wang, Y.2    Sul, H.S.3
  • 77
    • 84864281644 scopus 로고    scopus 로고
    • Haplotype combinations of AdPLA gene polymorphisms associate with growth traits in Chinese cattle
    • 22311034
    • Haplotype combinations of AdPLA gene polymorphisms associate with growth traits in Chinese cattle. Sun J, Zhu J, Xue J, Zhang C, Lan X, Lei C, Chen H, Mol Biol Rep 2012 39 6 7069 7076 10.1007/s11033-012-1538-7 22311034
    • (2012) Mol Biol Rep , vol.39 , Issue.6 , pp. 7069-7076
    • Sun, J.1    Zhu, J.2    Xue, J.3    Zhang, C.4    Lan, X.5    Lei, C.6    Chen, H.7
  • 79
    • 34247471241 scopus 로고    scopus 로고
    • A meta-analysis of quantitative trait loci associated with body weight and adiposity in mice
    • A meta-analysis of quantitative trait loci associated with body weight and adiposity in mice. Wuschke S, Dahm S, Schmidt C, Joost HG, Al-Hasani H, Int J Obes 2006 31 5 829 841
    • (2006) Int J Obes , vol.31 , Issue.5 , pp. 829-841
    • Wuschke, S.1    Dahm, S.2    Schmidt, C.3    Joost, H.G.4    Al-Hasani, H.5
  • 80
    • 77957771770 scopus 로고    scopus 로고
    • Genetic Polymorphisms of the CACNA2D1 Gene and Their Association with Carcass and Meat Quality Traits in Cattle
    • 20549332
    • Genetic Polymorphisms of the CACNA2D1 Gene and Their Association with Carcass and Meat Quality Traits in Cattle. Hou G-Y, Yuan Z-R, Gao X, Li J-Y, Gao H-J, Chen J-B, Xu S-Z, Biochem Genet 2010 48 9-10 751 759 20549332
    • (2010) Biochem Genet , vol.48 , Issue.9-10 , pp. 751-759
    • Hou, G.-Y.1    Yuan, Z.-R.2    Gao, X.3    Li, J.-Y.4    Gao, H.-J.5    Chen, J.-B.6    Xu, S.-Z.7
  • 81
    • 78651112947 scopus 로고    scopus 로고
    • Novel SNPs of the bovine CACNA2D1 gene and their association with carcass and meat quality traits
    • 20585886
    • Novel SNPs of the bovine CACNA2D1 gene and their association with carcass and meat quality traits. Yuan Z, Xu S, Mol Biol Rep 2011 38 1 365 370 10.1007/s11033-010-0117-z 20585886
    • (2011) Mol Biol Rep , vol.38 , Issue.1 , pp. 365-370
    • Yuan, Z.1    Xu, S.2
  • 82
  • 83
    • 0038687554 scopus 로고    scopus 로고
    • CSF-1 as a regulator of macrophage activation and immune responses
    • 12894871
    • CSF-1 as a regulator of macrophage activation and immune responses. Sweet MJ, Hume DA, Arch Immunol Ther Exp (Warsz) 2003 51 3 169 177 12894871
    • (2003) Arch Immunol Ther Exp (Warsz) , vol.51 , Issue.3 , pp. 169-177
    • Sweet, M.J.1    Hume, D.A.2
  • 84
    • 63249106129 scopus 로고    scopus 로고
    • Macrophage Content in Subcutaneous Adipose Tissue: Associations with Adiposity, Age, Inflammatory Markers, and Whole-Body Insulin Action in Healthy Pima Indians
    • 19008342
    • Macrophage Content in Subcutaneous Adipose Tissue: Associations With Adiposity, Age, Inflammatory Markers, and Whole-Body Insulin Action in Healthy Pima Indians. Ortega Martinez de Victoria E, Xu X, Koska J, Francisco AM, Scalise M, Ferrante AW, Krakoff J, Diabetes 2009 58 2 385 393 19008342
    • (2009) Diabetes , vol.58 , Issue.2 , pp. 385-393
    • Ortega Martinez De Victoria, E.1    Xu, X.2    Koska, J.3    Francisco, A.M.4    Scalise, M.5    Ferrante, A.W.6    Krakoff, J.7
  • 85
    • 33745787051 scopus 로고    scopus 로고
    • Acquired obesity increases CD68 and tumor necrosis factor-alpha and decreases adiponectin gene expression in adipose tissue: A study in monozygotic twins
    • 16608891
    • Acquired obesity increases CD68 and tumor necrosis factor-alpha and decreases adiponectin gene expression in adipose tissue: a study in monozygotic twins. Pietilainen KH, Kannisto K, Korsheninnikova E, Rissanen A, Kaprio J, Ehrenborg E, Hamsten A, Yki-Jarvinen H, J Clin Endocrinol Metab 2006 91 7 2776 2781 10.1210/jc.2005-2848 16608891
    • (2006) J Clin Endocrinol Metab , vol.91 , Issue.7 , pp. 2776-2781
    • Pietilainen, K.H.1    Kannisto, K.2    Korsheninnikova, E.3    Rissanen, A.4    Kaprio, J.5    Ehrenborg, E.6    Hamsten, A.7    Yki-Jarvinen, H.8
  • 87
    • 33646253693 scopus 로고    scopus 로고
    • P2Y12 receptor antagonists: A rapidly expanding group of antiplatelet agents
    • 16569650
    • P2Y12 receptor antagonists: a rapidly expanding group of antiplatelet agents. Cattaneo M, Eur Heart J 2006 27 9 1010 1012 16569650
    • (2006) Eur Heart J , vol.27 , Issue.9 , pp. 1010-1012
    • Cattaneo, M.1
  • 90
    • 84871778827 scopus 로고    scopus 로고
    • CCL5/CCR1 axis regulates multipotency of human adipose tissue derived stromal cells
    • 23276697
    • CCL5/CCR1 axis regulates multipotency of human adipose tissue derived stromal cells. Kauts M-L, Pihelgas S, Orro K, Neuman T, Piirsoo A, Stem Cell Res 2013 10 2 166 178 10.1016/j.scr.2012.11.004 23276697
    • (2013) Stem Cell Res , vol.10 , Issue.2 , pp. 166-178
    • Kauts, M.-L.1    Pihelgas, S.2    Orro, K.3    Neuman, T.4    Piirsoo, A.5
  • 92
  • 93
    • 31544457103 scopus 로고    scopus 로고
    • Mechanisms of Disease: Is osteoporosis the obesity of bone?
    • Mechanisms of Disease: is osteoporosis the obesity of bone? Rosen CJ, Bouxsein ML, Nat Clin Pract Rheum 2006 2 1 35 43 10.1038/ncprheum0070
    • (2006) Nat Clin Pract Rheum , vol.2 , Issue.1 , pp. 35-43
    • Rosen, C.J.1    Bouxsein, M.L.2
  • 94
    • 28544439444 scopus 로고    scopus 로고
    • The role of the immune system in the pathophysiology of osteoporosis
    • 16313351
    • The role of the immune system in the pathophysiology of osteoporosis. Clowes JA, Riggs BL, Khosla S, Immunol Rev 2005 208 207 227 10.1111/j.0105-2896.2005.00334.x 16313351
    • (2005) Immunol Rev , vol.208 , pp. 207-227
    • Clowes, J.A.1    Riggs, B.L.2    Khosla, S.3
  • 95
    • 0035031743 scopus 로고    scopus 로고
    • The Obese Gottingen Minipig as a Model of the Metabolic Syndrome: Dietary Effects on Obesity, Insulin Sensitivity, and Growth Hormone Profile
    • 11922179
    • The Obese Gottingen Minipig as a Model of the Metabolic Syndrome: Dietary Effects on Obesity, Insulin Sensitivity, and Growth Hormone Profile. Johansen T, Hansen HS, Richelsen B, Malmlöf K, Comp Med 2001 51 2 150 155 11922179
    • (2001) Comp Med , vol.51 , Issue.2 , pp. 150-155
    • Johansen, T.1    Hansen, H.S.2    Richelsen, B.3    Malmlöf, K.4
  • 97
    • 84863304598 scopus 로고    scopus 로고
    • A language and environment for statistical computing
    • R-Core-Team Vienna, Austria
    • A language and environment for statistical computing. R-Core-Team: R, R Foundation for Statistical Computing Vienna, Austria 2013 http://www.R-project.org/
    • (2013) R Foundation for Statistical Computing
  • 98
  • 99
    • 84902552747 scopus 로고    scopus 로고
    • HTSeq - A Python framework to work with high-throughput sequencing data
    • HTSeq-A Python framework to work with high-throughput sequencing data. Anders S, Pyl PT, Huber W, BioRxiv Preprint 2014
    • (2014) BioRxiv Preprint
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 100
    • 79959473093 scopus 로고    scopus 로고
    • Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling
    • 21685096
    • Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling. Łabaj PP, Leparc GG, Linggi BE, Markillie LM, Wiley HS, Kreil DP, Bioinformatics 2011 27 13 383 i391 10.1093/bioinformatics/btr247 21685096
    • (2011) Bioinformatics , vol.27 , Issue.13 , pp. 9383-i391
    • Łabaj, P.P.1    Leparc, G.G.2    Linggi, B.E.3    Markillie, L.M.4    Wiley, H.S.5    Kreil, D.P.6
  • 102
    • 33644872577 scopus 로고    scopus 로고
    • Limma: Linear Models for Microarray Data
    • New York: Springer Gentleman R, Carey V, Huber W, Irizarry R, Dudoit S
    • limma: Linear Models for Microarray Data. Smyth GK, Bioinformatics and Computational Biology Solutions Using R and Bioconductor New York: Springer, Gentleman R, Carey V, Huber W, Irizarry R, Dudoit S, 2005 397 420
    • (2005) Bioinformatics and Computational Biology Solutions Using R and Bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 103
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • 11333967
    • Lethality and centrality in protein networks. Jeong H, Mason SP, Barabasi AL, Oltvai ZN, Nature 2001 411 6833 41 42 10.1038/35075138 11333967
    • (2001) Nature , vol.411 , Issue.6833 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabasi, A.L.3    Oltvai, Z.N.4
  • 104
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: An R package for weighted correlation network analysis
    • 19114008
    • WGCNA: an R package for weighted correlation network analysis. Langfelder P, Horvath S, BMC Bioinformatics 2008 9 1 559 10.1186/1471-2105-9-559 19114008
    • (2008) BMC Bioinformatics , vol.9 , Issue.1 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 105
    • 23944458138 scopus 로고    scopus 로고
    • A General Framework for Weighted Gene Co-Expression Network Analysis
    • 1; ARTICLE 17
    • A General Framework for Weighted Gene Co-Expression Network Analysis. Zhang B, Horvath S, Stat Appl Genet Mol Biol 2005 4 1; Article 17 1 43
    • (2005) Stat Appl Genet Mol Biol , vol.4 , pp. 1-43
    • Zhang, B.1    Horvath, S.2
  • 106
    • 40049099114 scopus 로고    scopus 로고
    • Defining clusters from a hierarchical cluster tree: The Dynamic Tree Cut package for R
    • 18024473
    • Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Langfelder P, Zhang B, Horvath S, Bioinformatics 2008 24 5 719 720 10.1093/bioinformatics/btm563 18024473
    • (2008) Bioinformatics , vol.24 , Issue.5 , pp. 719-720
    • Langfelder, P.1    Zhang, B.2    Horvath, S.3
  • 108
    • 77953212372 scopus 로고    scopus 로고
    • Gene ontology analysis for RNA-seq: Accounting for selection bias
    • 20132535
    • Gene ontology analysis for RNA-seq: accounting for selection bias. Young M, Wakefield M, Smyth G, Oshlack A, Genome Biol 2010 11 2 14 10.1186/gb-2010-11-2-r14 20132535
    • (2010) Genome Biol , vol.11 , Issue.2 , pp. 1814
    • Young, M.1    Wakefield, M.2    Smyth, G.3    Oshlack, A.4
  • 109
    • 0037941585 scopus 로고    scopus 로고
    • Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
    • 12740579
    • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N, Nat Genet 2003 34 2 166 176 10.1038/ng1165 12740579
    • (2003) Nat Genet , vol.34 , Issue.2 , pp. 166-176
    • Segal, E.1    Shapira, M.2    Regev, A.3    Pe'Er, D.4    Botstein, D.5    Koller, D.6    Friedman, N.7
  • 110
    • 38349122751 scopus 로고    scopus 로고
    • Analysis of a Gibbs sampler method for model-based clustering of gene expression data
    • 18033794
    • Analysis of a Gibbs sampler method for model-based clustering of gene expression data. Joshi A, Van de Peer Y, Michoel T, Bioinformatics 2008 24 2 176 183 10.1093/bioinformatics/btm562 18033794
    • (2008) Bioinformatics , vol.24 , Issue.2 , pp. 176-183
    • Joshi, A.1    Van De Peer, Y.2    Michoel, T.3
  • 111
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • 11752295
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Edgar R, Domrachev M, Lash AE, Nucleic Acids Res 2002 30 1 207 210 10.1093/nar/30.1.207 11752295
    • (2002) Nucleic Acids Res , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3


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