Haplotype combinations of AdPLA gene polymorphisms associate with growth traits in Chinese cattle

Molecular Biology Reports

Volumn 39, Issue 6, 2012, Pages 7069-7076

  Sun, Jiajie ^a   Zhu, Jinlong ^a   Xue, Jing ^a   Zhang, Chunlei ^b   Lan, Xianyong ^a   Lei, Chuzhao ^a   Chen, Hong ^a  

^a NORTHWEST A F UNIVERSITY   (China)

^b JIANGSU NORMAL UNIVERSITY   (China)

Author keywords

AdPLA gene; Cattle; Forced PCR RFLP; Haplotype; SNP

Indexed keywords

ADIPOSE SPECIFIC PHOSPHOLIPASE A2 GENE; ANIMAL EXPERIMENT; ANIMAL GENETICS; ARTICLE; CATTLE; CONTROLLED STUDY; DNA SEQUENCE; GENE; GENE IDENTIFICATION; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENETIC ASSOCIATION; GENETIC SCREENING; GENETIC TRAIT; GENETIC VARIABILITY; GENOTYPING TECHNIQUE; HAPLOTYPE; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; BASE SEQUENCE; BODY WEIGHTS AND MEASURES; CATTLE; GENE FREQUENCY; GENETIC ASSOCIATION STUDIES; GENETIC VECTORS; HAPLOTYPES; HEART; LINKAGE DISEQUILIBRIUM; ORGAN SIZE; PHOSPHOLIPASES A2; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA;

BOS; BOVINAE; MUS;

EID: 84864281644     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-012-1538-7     Document Type: Article

References (27)

1. Schaloske RH, Dennis EA (2006) The phospholipase A(2) superfamily and its group numbering system. BBA-Mol Cell Biol L 1761:1246-1259 (Pubitemid 44755364)
2. Yuan C, Rieke CJ, Rimon G, Wingerd BA, Smith WL (2006) Partnering between monomers of cyclooxygenase-2 homodimers. Proc Natl Acad Sci USA 103:6142-6147
3. Richelsen B (1992) Release and effects of prostaglandins in adipose tissue. Prostag Leukotr Ess 47:171-182
4. Duncan RE, Sarkadi-Nagy E, Jaworski K, Ahmadian M, Sul HS (2008) Identification and functional characterization of adipose-specific phospholipase A(2) (AdPLA). J Biol Chem 283:25428-25436
5. Jaworski K, Ahmadian M, Duncan RE, Sarkadi-Nagy E, Varady KA, Hellerstein MK, Lee HY, Samuel VT, Shulman GI, Kim KH, de Val S, Kang C, Sul HS (2009) AdPLA ablation increases lipolysis and prevents obesity induced by high-fat feeding or leptin deficiency. Nat Med 15:159-168
6. Forman BM, Tontonoz P, Chen J, Brun RP, Spiegelman BM, Evans RM (1995) 15-deoxy-delta(12, 14)-prostaglandin j(2) is a ligand for the adipocyte determination factor PPAR-gamma. Cell 83:803-812 (Pubitemid 3006324)
7. Reginato MJ, Krakow SL, Bailey ST, Lazar MK (1998) Prosta-glandins promote and block adipogenesis through opposing effects on peroxisome proliferator-activated receptor gamma. J Biol Chem 273:1855-1858 (Pubitemid 28069225)
8. Fajas L, Miard S, Briggs MR, Auwerx J (2003) Selective cyclo-oxygenase-2 inhibitors impair adipocyte differentiation through inhibition of the clonal expansion phase. J Lipid Res 44:1652-1659 (Pubitemid 37185875)
9. Kather H, Simon B (1979) Biphasic effects of prostaglandin-E2 on the human fat-cell adenylate-cyclase. J Clin Invest 64:609-612 (Pubitemid 9235007)
10. Fain JN, Leffler CW, Bahouth SW (2000) Eicosanoids as endogenous regulators of leptin release and lipolysis by mouse adipose tissue in primary culture. J Lipid Res 41:1689-1694
11. Nugent C, Prins JB, Whitehead JP, Wentworth JM, Chatterjee VKK, O'Rahilly S (2001) Arachidonic acid stimulates glucose uptake in 3T3-L1 adipocytes by increasing GLUT1 and GLUT4 levels at the plasma membrane-evidence for involvement of lipoxygenase metabolites and peroxisome proliferator-activated receptor gamma. J Biol Chem 276:9149-9157
12. Ahmadian M, Duncan RE, Sul HS (2009) The skinny on fat: lipolysis and fatty acid utilization in adipocytes. Trends Endocrin Met 20:424-428
13. Sambrook J, Russell DW (2002) Molecuar cloning: a laboratory manual, 3rd edn. Science Press, Beijing
14. Nei M, Roychoudhury AK (1974) Sampling variances of heter-ozygosity and genetic distance. Genetics 76:379-390
15. Henderson CR (1986) Estimation of variances in animal model and reduced animal model for single traits and single records. J Dairy Sci 69:1394-1402
16. Stephens M, Smith NJ, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978-989 (Pubitemid 32289743)
17. Stephens M, Donnelly P (2003) A comparison of bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet 73:1162-1169 (Pubitemid 37414228)
18. Le Hir H, Nott A, Moore MJ (2003) How introns influence and enhance eukaryotic gene expression. Trends Biochem Sci 28:215-220 (Pubitemid 36507161)
19. Greenwood TA, Kelsoe JR (2003) Promoter and intronic variants affect the transcriptional regulation of the human dopamine transporter gene. Genomics 82:511-520 (Pubitemid 37239027)
20. Wang ZV, Deng Y, Wang QA, Sun K, Scherer PE (2010) Identification and characterization of a promoter cassette conferring adipocyte-specific gene expression. Endocrinology 151:2933-2939
21. Murani E, Ponsuksili S, Seyfert HM, Shi XM, Wimmers K (2009) Dual effect of a single nucleotide polymorphism in the first intron of the porcine Secreted phosphoprotein 1 gene: allele-specific binding of C/EBP beta and activation of aberrant splicing. BMC Mol Biol 10:96
22. Komar AA (2007) SNPs, silent but not invisible. Science 315:466-467 (Pubitemid 46178389)
23. Saunders R, Deane CM (2010) Synonymous codon usage influences the local protein structure observed. Nucleic Acids Res 38:6719-6728
24. Kimchi-Sarfaty C (2007) A 'silent' polymorphism in the MDR1 gene changes substrate specificity. Science 318:1382-1383 (Pubitemid 350208938)
25. Zhou T, Weems M, Wilke CO (2009) Translationally optimal codons associate with structurally sensitive sites in proteins. Mol Biol Evol 26:1571-1580
26. Vidal C, Cachia A, Xuereb-Anastasi A (2009) Effects of a synonymous variant in exon 9 of the CD44 gene on pre-mRNA splicing in a family with osteoporosis. Bone 45:736-742
27. Lan XY, Pan CY, Chen H, Zhang CL, Li JY, Zhao M, Lei CZ, Zhang AL, Zhang L (2007) An AluI PCR-RFLP detecting a silent allele at the goat POU1F1 locus and its association with production traits. Small Rumin Res 73:8-12 (Pubitemid 47369038)