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Volumn 99, Issue , 2015, Pages 1-6

The probability of improvement in fisher's geometric model: A probabilistic approach

Author keywords

Fitness landscape; Mathematical models; Mutations; Population genetics

Indexed keywords

ADAPTATION; FISHERY; FITNESS; GEOMETRY; MUTATION; NUMERICAL MODEL; PARAMETERIZATION; PHENOTYPE; POPULATION GENETICS;

EID: 84909978978     PISSN: 00405809     EISSN: 10960325     Source Type: Journal    
DOI: 10.1016/j.tpb.2014.10.004     Document Type: Article
Times cited : (10)

References (30)
  • 2
    • 84895727363 scopus 로고    scopus 로고
    • A Bayesian MCMC approach to assess the complete distribution of fitness effects of new mutations: uncovering the potential for adaptive walks in challenging environments
    • Bank C., Hietpas R.T., Wong A., Bolon D.N., Jensen J.D. A Bayesian MCMC approach to assess the complete distribution of fitness effects of new mutations: uncovering the potential for adaptive walks in challenging environments. Genetics 2014, 196:1-35.
    • (2014) Genetics , vol.196 , pp. 1-35
    • Bank, C.1    Hietpas, R.T.2    Wong, A.3    Bolon, D.N.4    Jensen, J.D.5
  • 3
    • 84914701200 scopus 로고    scopus 로고
    • Properties of selected mutations and genotypic landscapes under Fisher's Geometric Model
    • Blanquart F., Achaz G., Bataillon T., Tenaillon O. Properties of selected mutations and genotypic landscapes under Fisher's Geometric Model. Evolution 2014, 10.1111/evo.12545.
    • (2014) Evolution
    • Blanquart, F.1    Achaz, G.2    Bataillon, T.3    Tenaillon, O.4
  • 4
    • 0033055004 scopus 로고    scopus 로고
    • Evolution by small steps and rugged landscapes in the RNA virus ϕ6
    • Burch C.L., Chao L. Evolution by small steps and rugged landscapes in the RNA virus ϕ6. Genetics 1999, 151:921-927.
    • (1999) Genetics , vol.151 , pp. 921-927
    • Burch, C.L.1    Chao, L.2
  • 5
    • 4544322768 scopus 로고
    • The incomplete beta function-a historical profile
    • Dutka J. The incomplete beta function-a historical profile. Arch. Hist. Exact Sci. 1981, 24:11-29.
    • (1981) Arch. Hist. Exact Sci. , vol.24 , pp. 11-29
    • Dutka, J.1
  • 6
    • 0019869967 scopus 로고
    • On the survival probability of a slightly advantageous mutant gene with a general distribution of progeny size-a branching process model
    • Eshel I. On the survival probability of a slightly advantageous mutant gene with a general distribution of progeny size-a branching process model. J. Math. Biol. 1981, 12:355-362.
    • (1981) J. Math. Biol. , vol.12 , pp. 355-362
    • Eshel, I.1
  • 9
    • 0030574072 scopus 로고    scopus 로고
    • Compensatory nearly neutral mutations: selection without adaptation
    • Hartl D.L., Taubes C.H. Compensatory nearly neutral mutations: selection without adaptation. J. Theoret. Biol. 1996, 182:303-309.
    • (1996) J. Theoret. Biol. , vol.182 , pp. 303-309
    • Hartl, D.L.1    Taubes, C.H.2
  • 10
    • 84888829471 scopus 로고    scopus 로고
    • Shifting fitness landscapes in response to altered environments
    • Hietpas R.T., Bank C., Jensen J.D., Bolon D.N.A. Shifting fitness landscapes in response to altered environments. Evolution 2013, 67:3512-3522.
    • (2013) Evolution , vol.67 , pp. 3512-3522
    • Hietpas, R.T.1    Bank, C.2    Jensen, J.D.3    Bolon, D.N.A.4
  • 12
    • 79953740433 scopus 로고    scopus 로고
    • Concise formulas for the area and volume of a hyperspherical cap
    • Li S. Concise formulas for the area and volume of a hyperspherical cap. Asian J. Math. Stat. 2011, 4:66-70.
    • (2011) Asian J. Math. Stat. , vol.4 , pp. 66-70
    • Li, S.1
  • 13
    • 79251553136 scopus 로고    scopus 로고
    • Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa
    • MacLean R.C., Perron G.G., Gardner A. Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa. Genetics 2010, 186:1345-1354.
    • (2010) Genetics , vol.186 , pp. 1345-1354
    • MacLean, R.C.1    Perron, G.G.2    Gardner, A.3
  • 14
    • 84901336668 scopus 로고    scopus 로고
    • Fisher's geometrical model emerges as a property of complex integrated phenotypic networks
    • Martin G. Fisher's geometrical model emerges as a property of complex integrated phenotypic networks. Genetics 2014, 197:237-255.
    • (2014) Genetics , vol.197 , pp. 237-255
    • Martin, G.1
  • 15
    • 33747080569 scopus 로고    scopus 로고
    • A general multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species
    • Martin G., Lenormand T. A general multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species. Evolution 2006, 60:893-907.
    • (2006) Evolution , vol.60 , pp. 893-907
    • Martin, G.1    Lenormand, T.2
  • 16
    • 49849084622 scopus 로고    scopus 로고
    • The distribution of beneficial and fixed mutation fitness effects close to an optimum
    • Martin G., Lenormand T. The distribution of beneficial and fixed mutation fitness effects close to an optimum. Genetics 2008, 179:907-916.
    • (2008) Genetics , vol.179 , pp. 907-916
    • Martin, G.1    Lenormand, T.2
  • 17
    • 84908013044 scopus 로고    scopus 로고
    • Fisher's geometric model with a moving optimum
    • Matuszewski S., Hermisson J., Kopp M. Fisher's geometric model with a moving optimum. Evolution 2014, 68:2571-2588.
    • (2014) Evolution , vol.68 , pp. 2571-2588
    • Matuszewski, S.1    Hermisson, J.2    Kopp, M.3
  • 18
    • 80054924877 scopus 로고    scopus 로고
    • Adaptive landscapes in evolving populations of Pseudomonas fluorescens
    • Melnyk A.H., Kassen R. Adaptive landscapes in evolving populations of Pseudomonas fluorescens. Evolution 2011, 65:3048-3059.
    • (2011) Evolution , vol.65 , pp. 3048-3059
    • Melnyk, A.H.1    Kassen, R.2
  • 19
    • 0004918181 scopus 로고
    • A note on a method for generating points uniformly on n-dimensional spheres
    • Muller M.E. A note on a method for generating points uniformly on n-dimensional spheres. Commun. ACM 1959, 2:19-20.
    • (1959) Commun. ACM , vol.2 , pp. 19-20
    • Muller, M.E.1
  • 20
    • 84909961366 scopus 로고    scopus 로고
    • Cambridge University Press, New York, NY, F.W.J. Olver, D.W. Lozier, R.F. Boisvert, C.W. Clark (Eds.)
    • NIST Handbook of Mathematical Functions 2010, Cambridge University Press, New York, NY. F.W.J. Olver, D.W. Lozier, R.F. Boisvert, C.W. Clark (Eds.).
    • (2010)
  • 21
    • 0031714655 scopus 로고    scopus 로고
    • The population genetics of adaptation: the distribution of factors fixed during adaptive evolution
    • Orr H.A. The population genetics of adaptation: the distribution of factors fixed during adaptive evolution. Evolution 1998, 52:935-949.
    • (1998) Evolution , vol.52 , pp. 935-949
    • Orr, H.A.1
  • 22
    • 52749098548 scopus 로고    scopus 로고
    • The fixation probability of beneficial mutations
    • Patwa Z., Wahl L.M. The fixation probability of beneficial mutations. J. R. Soc. Interface 2008, 5:1279-1289.
    • (2008) J. R. Soc. Interface , vol.5 , pp. 1279-1289
    • Patwa, Z.1    Wahl, L.M.2
  • 23
    • 84890874862 scopus 로고    scopus 로고
    • Rates of fitness decline and rebound suggest pervasive epistasis
    • Perfeito L., Sousa A., Bataillon T., Gordo I. Rates of fitness decline and rebound suggest pervasive epistasis. Evolution 2014, 68:150-162.
    • (2014) Evolution , vol.68 , pp. 150-162
    • Perfeito, L.1    Sousa, A.2    Bataillon, T.3    Gordo, I.4
  • 24
    • 0025219576 scopus 로고
    • A geometric model for the evolution of development
    • Rice S.H. A geometric model for the evolution of development. J. Theoret. Biol. 1990, 143:319-342.
    • (1990) J. Theoret. Biol. , vol.143 , pp. 319-342
    • Rice, S.H.1
  • 25
    • 84862840054 scopus 로고    scopus 로고
    • Cost of antibiotic resistance and the geometry of adaptation
    • Sousa A., Magalhães S., Gordo I. Cost of antibiotic resistance and the geometry of adaptation. Mol. Biol. Evol. 2012, 29:1417-1428.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1417-1428
    • Sousa, A.1    Magalhães, S.2    Gordo, I.3
  • 26
    • 84870520677 scopus 로고    scopus 로고
    • Antibiotic resistance and stress in the light of Fisher's model
    • Trindade S., Sousa A., Gordo I. Antibiotic resistance and stress in the light of Fisher's model. Evolution 2012, 66:3815-3824.
    • (2012) Evolution , vol.66 , pp. 3815-3824
    • Trindade, S.1    Sousa, A.2    Gordo, I.3
  • 27
    • 84909961365 scopus 로고    scopus 로고
    • Ploidy and the predictability of evolution in Fisher's geometric model
    • Venkataram, S., Sellis, D., Petrov, D.A., 2013. Ploidy and the predictability of evolution in Fisher's geometric model. bioRxiv . http://dx.doi.org/10.1101/001016.
    • (2013) bioRxiv
    • Venkataram, S.1    Sellis, D.2    Petrov, D.A.3
  • 28
    • 33746097735 scopus 로고    scopus 로고
    • Fisher's geometrical model of evolutionary adaptation-beyond spherical geometry
    • Waxman D. Fisher's geometrical model of evolutionary adaptation-beyond spherical geometry. J. Theoret. Biol. 2006, 241:887-895.
    • (2006) J. Theoret. Biol , vol.241 , pp. 887-895
    • Waxman, D.1
  • 29
    • 26644472934 scopus 로고    scopus 로고
    • Fisher's microscope and Haldane's ellipse
    • Waxman D., Welch J.J. Fisher's microscope and Haldane's ellipse. Am. Nat. 2005, 166:447-457.
    • (2005) Am. Nat. , vol.166 , pp. 447-457
    • Waxman, D.1    Welch, J.J.2
  • 30
    • 84885051509 scopus 로고    scopus 로고
    • Fisher's geometric model of adaptation meets the functional synthesis: data on pairwise epistasis for fitness yields insights into the shape and size of phenotype space
    • Weinreich D.M., Knies J.L. Fisher's geometric model of adaptation meets the functional synthesis: data on pairwise epistasis for fitness yields insights into the shape and size of phenotype space. Evolution 2013, 67:2957-2972.
    • (2013) Evolution , vol.67 , pp. 2957-2972
    • Weinreich, D.M.1    Knies, J.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.