-
1
-
-
77954656202
-
Environmental duress and epistasis: how does stress affect the strength of selection on new mutations
-
Agrawal, A. F., and M. C. Whitlock. 2010. Environmental duress and epistasis: how does stress affect the strength of selection on new mutations Trends Ecol. Evol. 25:450-458.
-
(2010)
Trends Ecol. Evol.
, vol.25
, pp. 450-458
-
-
Agrawal, A.F.1
Whitlock, M.C.2
-
2
-
-
77949569493
-
Antibiotic resistance and its cost: is it possible to reverse resistance?
-
Andersson, D. I., and D. Hughes. 2010. Antibiotic resistance and its cost: is it possible to reverse resistance? Nat. Rev. Microbiol. 8:260-271.
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 260-271
-
-
Andersson, D.I.1
Hughes, D.2
-
3
-
-
47249153619
-
Impact of individual mutations on increased fitness in adaptively evolved strains of Escherichia coli
-
Applebee, M. K., M. J. Herrgard, and B. O. Palsson. 2008. Impact of individual mutations on increased fitness in adaptively evolved strains of Escherichia coli. J. Bacteriol. 190:5087-5094.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 5087-5094
-
-
Applebee, M.K.1
Herrgard, M.J.2
Palsson, B.O.3
-
4
-
-
77952796777
-
Escherichia coli rpoB mutants have increased evolvability in proportion to their fitness defects
-
Barrick, J. E., M. R. Kauth, C. C. Strelioff, and R. E. Lenski. 2010. Escherichia coli rpoB mutants have increased evolvability in proportion to their fitness defects. Mol. Biol. Evol. 27:1338-1347.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 1338-1347
-
-
Barrick, J.E.1
Kauth, M.R.2
Strelioff, C.C.3
Lenski, R.E.4
-
5
-
-
81255211330
-
Cost of adaptation and fitness effects of beneficial mutations in Pseudomonas fluorescens
-
Bataillon, T., T. Zhang, and R. Kassen. 2011. Cost of adaptation and fitness effects of beneficial mutations in Pseudomonas fluorescens. Genetics 189:939-949.
-
(2011)
Genetics
, vol.189
, pp. 939-949
-
-
Bataillon, T.1
Zhang, T.2
Kassen, R.3
-
6
-
-
80054109231
-
Inhibition of antibacterial activity of cycloserine by alpha-alanine
-
Bondi, A., J. Kornblum, and C. Forte. 1957. Inhibition of antibacterial activity of cycloserine by alpha-alanine. Proc. Soc. Exp. Biol. Med. 96:270-272.
-
(1957)
Proc. Soc. Exp. Biol. Med.
, vol.96
, pp. 270-272
-
-
Bondi, A.1
Kornblum, J.2
Forte, C.3
-
7
-
-
33846131262
-
Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies
-
Case, R. J., Y. Boucher, I. Dahllof, C. Holmstrom, W. F. Doolittle, and S. Kjelleberg. 2007. Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies. Appl. Environ. Microbiol. 73:278-288.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 278-288
-
-
Case, R.J.1
Boucher, Y.2
Dahllof, I.3
Holmstrom, C.4
Doolittle, W.F.5
Kjelleberg, S.6
-
8
-
-
7344230525
-
Some evolutionary consequences of deleterious mutations
-
Charlesworth, B., and D. Charlesworth. 1998. Some evolutionary consequences of deleterious mutations. Genetica 102-103:3-19.
-
(1998)
Genetica
-
-
Charlesworth, B.1
Charlesworth, D.2
-
9
-
-
78650546051
-
RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media
-
Conrad, T. M., M. Frazier, A. R. Joyce, B. K. Cho, E. M. Knight, N. E. Lewis, R. Landick, and B. O. Palsson. 2010. RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media. Proc. Natl. Acad. Sci. USA 107:20500-20505.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 20500-20505
-
-
Conrad, T.M.1
Frazier, M.2
Joyce, A.R.3
Cho, B.K.4
Knight, E.M.5
Lewis, N.E.6
Landick, R.7
Palsson, B.O.8
-
10
-
-
0025807972
-
Prolonged environmental stress via a two step process selects mutants of Escherichia, Salmonella and Pseudomonas that grow at 54 degrees C
-
Droffner, M. L., and N. Yamamoto. 1991. Prolonged environmental stress via a two step process selects mutants of Escherichia, Salmonella and Pseudomonas that grow at 54 degrees C. Arch. Microbiol. 156:307-311.
-
(1991)
Arch. Microbiol.
, vol.156
, pp. 307-311
-
-
Droffner, M.L.1
Yamamoto, N.2
-
11
-
-
34447546660
-
The distribution of fitness effects of new mutations
-
Eyre-Walker, A., and P. D. Keightley. 2007. The distribution of fitness effects of new mutations. Nat. Rev. Genet. 8:610-618.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 610-618
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
12
-
-
0031721651
-
Effect of temperature on in vivo protein synthetic capacity in Escherichia coli
-
Farewell, A., and F. C. Neidhardt. 1998. Effect of temperature on in vivo protein synthetic capacity in Escherichia coli. J. Bacteriol. 180:4704-4710.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4704-4710
-
-
Farewell, A.1
Neidhardt, F.C.2
-
13
-
-
33244456358
-
Characterization of cycA mutants of Escherichia coli: an assay for measuring in vivo mutation rates
-
Fehér, T., B. Cseh, K. Umenhoffer, I. Karcagi, and G. Pósfai. 2006. Characterization of cycA mutants of Escherichia coli: an assay for measuring in vivo mutation rates. Mutat. Res. 595:184-190.
-
(2006)
Mutat. Res.
, vol.595
, pp. 184-190
-
-
Fehér, T.1
Cseh, B.2
Umenhoffer, K.3
Karcagi, I.4
Pósfai, G.5
-
15
-
-
0025776444
-
Thermotolerant nalidixic acid-resistant mutants of Escherichia coli
-
Friedman, S. M., M. L. Droffner, and N. Yamamoto. 1991. Thermotolerant nalidixic acid-resistant mutants of Escherichia coli. Curr. Microbiol. 22:311-315.
-
(1991)
Curr. Microbiol.
, vol.22
, pp. 311-315
-
-
Friedman, S.M.1
Droffner, M.L.2
Yamamoto, N.3
-
16
-
-
67849092403
-
The evolution of epistasis and its links with genetic robustness, complexity and drift in a phenotypic model of adaptation
-
Gros, P. A., H. Le Nagard, and O. Tenaillon. 2009. The evolution of epistasis and its links with genetic robustness, complexity and drift in a phenotypic model of adaptation. Genetics 182:277-293.
-
(2009)
Genetics
, vol.182
, pp. 277-293
-
-
Gros, P.A.1
Le Nagard, H.2
Tenaillon, O.3
-
17
-
-
79960836520
-
Epistasis buffers the fitness effects of rifampicin-resistance mutations in Pseudomonas aeruginosa
-
Hall, A. R., and R. C. MacLean. 2011. Epistasis buffers the fitness effects of rifampicin-resistance mutations in Pseudomonas aeruginosa. Evolution 65:2370-2379.
-
(2011)
Evolution
, vol.65
, pp. 2370-2379
-
-
Hall, A.R.1
MacLean, R.C.2
-
18
-
-
79953197586
-
The fitness cost of rifampicin resistance in Pseudomonas aeruginosa depends on demand for RNA polymerase
-
Hall, A. R., J. C. Iles, and R. C. MacLean. 2011. The fitness cost of rifampicin resistance in Pseudomonas aeruginosa depends on demand for RNA polymerase. Genetics 187:817-822.
-
(2011)
Genetics
, vol.187
, pp. 817-822
-
-
Hall, A.R.1
Iles, J.C.2
MacLean, R.C.3
-
19
-
-
33751544539
-
Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale
-
Herring, C. D., A. Raghunathan, C. Honisch, T. Patel, M. K. Applebee, A. R. Joyce, T. J. Albert, F. R. Blattner, D. van den Boom, C. R. Cantor, et al. 2006. Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. Nat. Genet. 38:1406-1412.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1406-1412
-
-
Herring, C.D.1
Raghunathan, A.2
Honisch, C.3
Patel, T.4
Applebee, M.K.5
Joyce, A.R.6
Albert, T.J.7
Blattner, F.R.8
van den Boom, D.9
Cantor, C.R.10
-
20
-
-
0000378122
-
Alanine: cycloserine antagonism
-
Hoeprich, P. D. 1965. Alanine: cycloserine antagonism. J. Biol. Chem. 240:1654-1660.
-
(1965)
J. Biol. Chem.
, vol.240
, pp. 1654-1660
-
-
Hoeprich, P.D.1
-
21
-
-
45849153892
-
Interactions between stressful environment and gene deletions alleviate the expected average loss of fitness in yeast
-
Jasnos, L., K. Tomala, D. Paczesniak, and R. Korona. 2008. Interactions between stressful environment and gene deletions alleviate the expected average loss of fitness in yeast. Genetics 178:2105-2111.
-
(2008)
Genetics
, vol.178
, pp. 2105-2111
-
-
Jasnos, L.1
Tomala, K.2
Paczesniak, D.3
Korona, R.4
-
22
-
-
0028163708
-
An experimental study of inbreeding depression in a natural habitat
-
Jimenez, J., K. Hughes, G. Alaks, L. Graham, and R. Lacy. 1994. An experimental study of inbreeding depression in a natural habitat. Science 266:271-273.
-
(1994)
Science
, vol.266
, pp. 271-273
-
-
Jimenez, J.1
Hughes, K.2
Alaks, G.3
Graham, L.4
Lacy, R.5
-
23
-
-
0029931416
-
Estimate of the genomic mutation rate deleterious to overall fitness in E. coli
-
Kibota, T. T., and M. Lynch. 1996. Estimate of the genomic mutation rate deleterious to overall fitness in E. coli. Nature 381:694-696.
-
(1996)
Nature
, vol.381
, pp. 694-696
-
-
Kibota, T.T.1
Lynch, M.2
-
24
-
-
0041853578
-
Environmental stresses can alleviate the average deleterious effect of mutations
-
10
-
Kishony, R., and S. Leibler. 2003. Environmental stresses can alleviate the average deleterious effect of mutations. J. Biol. 2:14-14.10.
-
(2003)
J. Biol.
, vol.2
, pp. 14-14
-
-
Kishony, R.1
Leibler, S.2
-
25
-
-
0028556693
-
Genotype-environment interactions and the estimation of the genomic mutation rate in Drosophila melanogaster
-
Kondrashov, A. S., and D. Houle. 1994. Genotype-environment interactions and the estimation of the genomic mutation rate in Drosophila melanogaster. Proc. Biol. Sci. 258:221-227.
-
(1994)
Proc. Biol. Sci.
, vol.258
, pp. 221-227
-
-
Kondrashov, A.S.1
Houle, D.2
-
26
-
-
0032948292
-
Unpredictable fitness transitions between haploid and diploid strains of the genetically loaded yeast Saccharomyces cerevisiae
-
Korona, R. 1999. Unpredictable fitness transitions between haploid and diploid strains of the genetically loaded yeast Saccharomyces cerevisiae. Genetics 151:77-85.
-
(1999)
Genetics
, vol.151
, pp. 77-85
-
-
Korona, R.1
-
27
-
-
0000190405
-
-
American Society for Microbiology (ASM) Press, Washington, DC
-
Kurland, C. G., D. Hughes, and M. Ehrenberg. 1996. Limitations of translational accuracy. American Society for Microbiology (ASM) Press, Washington, DC.
-
(1996)
Limitations of translational accuracy
-
-
Kurland, C.G.1
Hughes, D.2
Ehrenberg, M.3
-
28
-
-
81755177852
-
Effect of host species on the distribution of mutational fitness effects for an RNA virus
-
Lalic, J., J. M. Cuevas, and S. F. Elena. 2011. Effect of host species on the distribution of mutational fitness effects for an RNA virus. PLoS Genet. 7:e1002378.
-
(2011)
PLoS Genet.
, vol.7
-
-
Lalic, J.1
Cuevas, J.M.2
Elena, S.F.3
-
29
-
-
0344395567
-
High deleterious genomic mutation rate in stationary phase of Escherichia coli
-
Loewe, L., V. Textor, and S. Scherer. 2003. High deleterious genomic mutation rate in stationary phase of Escherichia coli. Science 302:1558-1560.
-
(2003)
Science
, vol.302
, pp. 1558-1560
-
-
Loewe, L.1
Textor, V.2
Scherer, S.3
-
30
-
-
79958074210
-
Complexity, pleiotropy, and the fitness effect of mutations
-
Lourenço, J., N. Galtier, and S. Glemin. 2011. Complexity, pleiotropy, and the fitness effect of mutations. Evolution 65:1559-1571.
-
(2011)
Evolution
, vol.65
, pp. 1559-1571
-
-
Lourenço, J.1
Galtier, N.2
Glemin, S.3
-
31
-
-
62149084484
-
The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa
-
MacLean, R. C., and A. Buckling. 2009. The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa. PloS Genet. 5:e1000406.
-
(2009)
PloS Genet.
, vol.5
-
-
MacLean, R.C.1
Buckling, A.2
-
32
-
-
77952556349
-
The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts
-
MacLean, R. C., A. R. Hall, G. G. Perron, and A. Buckling. 2010. The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts. Nat. Rev. Genet. 11:405-414.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 405-414
-
-
MacLean, R.C.1
Hall, A.R.2
Perron, G.G.3
Buckling, A.4
-
33
-
-
84857238829
-
Dietary stress does not strengthen selection against single deleterious mutations in Drosophila melanogaster
-
Maclellan, K., L. Kwan, M. C. Whitlock, and H. D. Rundle. 2012. Dietary stress does not strengthen selection against single deleterious mutations in Drosophila melanogaster. Heredity (Edinb) 108:203-210.
-
(2012)
Heredity (Edinb)
, vol.108
, pp. 203-210
-
-
Maclellan, K.1
Kwan, L.2
Whitlock, M.C.3
Rundle, H.D.4
-
34
-
-
33747080569
-
A general multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species
-
Martin, G., and T. Lenormand. 2006a. A general multivariate extension of Fisher's geometrical model and the distribution of mutation fitness effects across species. Evolution 60:893-907.
-
(2006)
Evolution
, vol.60
, pp. 893-907
-
-
Martin, G.1
Lenormand, T.2
-
35
-
-
33846886349
-
The fitness effect of mutations across environments: a survey in light of fitness landscape models
-
Martin, G., and T. Lenormand. 2006b. The fitness effect of mutations across environments: a survey in light of fitness landscape models. Evolution 60:2413-2427.
-
(2006)
Evolution
, vol.60
, pp. 2413-2427
-
-
Martin, G.1
Lenormand, T.2
-
36
-
-
34047099379
-
Distributions of epistasis in microbes fit predictions from a fitness landscape model
-
Martin, G., S. F. Elena, and T. Lenormand. 2007. Distributions of epistasis in microbes fit predictions from a fitness landscape model. Nat. Genet. 39:555-560.
-
(2007)
Nat. Genet.
, vol.39
, pp. 555-560
-
-
Martin, G.1
Elena, S.F.2
Lenormand, T.3
-
37
-
-
78650475398
-
Phenotypic landscape of a bacterial cell
-
Nichols, R. J., S. Sen, Y. J. Choo, P. Beltrao, M. Zietek, R. Chaba, S. Lee, K. M. Kazmierczak, K. J. Lee, A. Wong, et al. 2011. Phenotypic landscape of a bacterial cell. Cell 144:143-156.
-
(2011)
Cell
, vol.144
, pp. 143-156
-
-
Nichols, R.J.1
Sen, S.2
Choo, Y.J.3
Beltrao, P.4
Zietek, M.5
Chaba, R.6
Lee, S.7
Kazmierczak, K.M.8
Lee, K.J.9
Wong, A.10
-
38
-
-
16344391209
-
Theories of adaptation: what they do and don't say
-
Orr, H. A. 2005. Theories of adaptation: what they do and don't say. Genetica 123:3-13.
-
(2005)
Genetica
, vol.123
, pp. 3-13
-
-
Orr, H.A.1
-
39
-
-
70649114603
-
The fitness cost of streptomycin resistance depends on rpsL mutation, carbon source and rpoS (sigma(s))
-
Paulander, W., S. Maisnier-Patin, and D. I. Andersson. 2009. The fitness cost of streptomycin resistance depends on rpsL mutation, carbon source and rpoS (sigma(s)). Genetics 183:539-546.
-
(2009)
Genetics
, vol.183
, pp. 539-546
-
-
Paulander, W.1
Maisnier-Patin, S.2
Andersson, D.I.3
-
40
-
-
0027264175
-
Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms
-
Poulsen, L. K., G. Ballard, and D. A. Stahl. 1993. Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms. Appl. Environ. Microbiol. 59:1354-1360.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 1354-1360
-
-
Poulsen, L.K.1
Ballard, G.2
Stahl, D.A.3
-
41
-
-
0035949692
-
Contribution of individual random mutations to genotype-by-environment interactions in Escherichia coli
-
Remold, S. K., and R. E. Lenski. 2001. Contribution of individual random mutations to genotype-by-environment interactions in Escherichia coli. Proc. Natl. Acad. Sci. USA 98:11388-11393.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11388-11393
-
-
Remold, S.K.1
Lenski, R.E.2
-
42
-
-
77956325563
-
Assessing the emergence of resistance: the absence of biological cost in vivo may compromise fosfomycin treatments for P. aeruginosa infections
-
Rodriguez-Rojas, A., M. D. Macia, A. Couce, C. Gomez, A. Castaneda-Garcia, A. Oliver, and J. Blazquez. 2010. Assessing the emergence of resistance: the absence of biological cost in vivo may compromise fosfomycin treatments for P. aeruginosa infections. PLoS One 5:e10193.
-
(2010)
PLoS One
, vol.5
-
-
Rodriguez-Rojas, A.1
Macia, M.D.2
Couce, A.3
Gomez, C.4
Castaneda-Garcia, A.5
Oliver, A.6
Blazquez, J.7
-
43
-
-
0030725502
-
Rapid decline of fitness in panmictic populations of Drosophila melanogaster maintained under relaxed natural selection
-
Shabalina, S. A., L. Yampolsky, and A. S. Kondrashov. 1997. Rapid decline of fitness in panmictic populations of Drosophila melanogaster maintained under relaxed natural selection. Proc. Natl. Acad. Sci. USA 94:13034-13039.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13034-13039
-
-
Shabalina, S.A.1
Yampolsky, L.2
Kondrashov, A.S.3
-
44
-
-
84862840054
-
Cost of antibiotic resistance and the geometry of adaptation
-
29:1417-1428
-
Sousa, A., S. Magalhaes, and I. Gordo. 2012. Cost of antibiotic resistance and the geometry of adaptation. Mol. Biol. Evol. 29:1417-1428.
-
(2012)
Mol. Biol. Evol.
-
-
Sousa, A.1
Magalhaes, S.2
Gordo, I.3
-
45
-
-
0035970068
-
Environmental stress and mutational load in diploid strains of the yeast Saccharomyces cerevisiae
-
Szafraniec, K., R. H. Borts, and R. Korona. 2001. Environmental stress and mutational load in diploid strains of the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 98:1107-1112.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 1107-1112
-
-
Szafraniec, K.1
Borts, R.H.2
Korona, R.3
-
46
-
-
84856258903
-
The molecular diversity of adaptive convergence
-
Tenaillon, O., A. Rodriguez-Verdugo, R. L. Gaut, P. McDonald, A. F. Bennett, A. D. Long, and B. S. Gaut. 2012. The molecular diversity of adaptive convergence. Science 335:457-461.
-
(2012)
Science
, vol.335
, pp. 457-461
-
-
Tenaillon, O.1
Rodriguez-Verdugo, A.2
Gaut, R.L.3
McDonald, P.4
Bennett, A.F.5
Long, A.D.6
Gaut, B.S.7
-
47
-
-
68249108837
-
Positive epistasis drives the acquisition of multidrug resistance
-
Trindade, S., A. Sousa, K. B. Xavier, F. Dionisio, M. G. Ferreira, and I. Gordo. 2009. Positive epistasis drives the acquisition of multidrug resistance. PLoS Genet 5:e1000578.
-
(2009)
PLoS Genet
, vol.5
-
-
Trindade, S.1
Sousa, A.2
Xavier, K.B.3
Dionisio, F.4
Ferreira, M.G.5
Gordo, I.6
-
48
-
-
77951595254
-
Rate and effects of spontaneous mutations that affect fitness in mutator Escherichia coli
-
Trindade, S., L. Perfeito, and I. Gordo. 2010. Rate and effects of spontaneous mutations that affect fitness in mutator Escherichia coli. Philos. Trans. R. Soc. B 365:1177-1186.
-
(2010)
Philos. Trans. R. Soc. B
, vol.365
, pp. 1177-1186
-
-
Trindade, S.1
Perfeito, L.2
Gordo, I.3
-
49
-
-
0030755365
-
DNA supercoiling and bacterial adaptation: thermotolerance and thermoresistance
-
Tse-Dinh, Y. C., H. Qi, and R. Menzel. 1997. DNA supercoiling and bacterial adaptation: thermotolerance and thermoresistance. Trends Microbiol. 5:323-326.
-
(1997)
Trends Microbiol.
, vol.5
, pp. 323-326
-
-
Tse-Dinh, Y.C.1
Qi, H.2
Menzel, R.3
-
50
-
-
0033831346
-
The fitness effects of spontaneous mutations in Caenorhabditis elegans
-
Vassilieva, L. L., A. M. Hook, and M. Lynch. 2000. The fitness effects of spontaneous mutations in Caenorhabditis elegans. Evolution 54:1234-1246.
-
(2000)
Evolution
, vol.54
, pp. 1234-1246
-
-
Vassilieva, L.L.1
Hook, A.M.2
Lynch, M.3
-
51
-
-
26644472934
-
Fisher's microscope and Haldane's ellipse
-
Waxman, D., and J. J. Welch. 2005. Fisher's microscope and Haldane's ellipse. Am. Nat. 166:447-457.
-
(2005)
Am. Nat.
, vol.166
, pp. 447-457
-
-
Waxman, D.1
Welch, J.J.2
-
52
-
-
0004062749
-
-
Wolfram Research, Inc, Champaign, IL
-
Wolfram Research, I. 2010. Mathematica. Wolfram Research, Inc, Champaign, IL.
-
(2010)
Mathematica
-
-
Wolfram Research, I.1
|