메뉴 건너뛰기




Volumn 159, Issue 3, 2014, Pages 662-675

Genome-wide RNA Tomography in the Zebrafish Embryo

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

EID: 84908338722     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2014.09.038     Document Type: Article
Times cited : (216)

References (41)
  • 2
    • 84887115231 scopus 로고    scopus 로고
    • Image-based transcriptomics in thousands of single human cells at single-molecule resolution
    • N. Battich, T. Stoeger, and L. Pelkmans Image-based transcriptomics in thousands of single human cells at single-molecule resolution Nat. Methods 10 2013 1127 1133
    • (2013) Nat. Methods , vol.10 , pp. 1127-1133
    • Battich, N.1    Stoeger, T.2    Pelkmans, L.3
  • 5
    • 84881505548 scopus 로고    scopus 로고
    • Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression
    • P.A. Combs, and M.B. Eisen Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression PLoS ONE 8 2013 e71820
    • (2013) PLoS ONE , vol.8 , pp. 71820
    • Combs, P.A.1    Eisen, M.B.2
  • 6
    • 84862102965 scopus 로고    scopus 로고
    • Identification and expression analysis of two novel members of the Mesp family in zebrafish
    • S.J. Cutty, R. Fior, P.M. Henriques, L. Saúde, and F.C. Wardle Identification and expression analysis of two novel members of the Mesp family in zebrafish Int. J. Dev. Biol. 56 2012 285 294
    • (2012) Int. J. Dev. Biol. , vol.56 , pp. 285-294
    • Cutty, S.J.1    Fior, R.2    Henriques, P.M.3    Saúde, L.4    Wardle, F.C.5
  • 7
    • 0001489493 scopus 로고
    • An iterative procedure for estimation in contingency tables
    • S.E. Fienberg An iterative procedure for estimation in contingency tables Ann. Math. Stat. 41 1970 907 917
    • (1970) Ann. Math. Stat. , vol.41 , pp. 907-917
    • Fienberg, S.E.1
  • 9
    • 84867297481 scopus 로고    scopus 로고
    • Web-based digital gene expression atlases for the mouse
    • L. Geffers, B. Herrmann, and G. Eichele Web-based digital gene expression atlases for the mouse Mamm. Genome 23 2012 525 538
    • (2012) Mamm. Genome , vol.23 , pp. 525-538
    • Geffers, L.1    Herrmann, B.2    Eichele, G.3
  • 10
    • 0014905513 scopus 로고
    • Algebraic reconstruction techniques (ART) for three-dimensional electron microscopy and x-ray photography
    • R. Gordon, R. Bender, and G.T. Herman Algebraic reconstruction techniques (ART) for three-dimensional electron microscopy and x-ray photography J. Theor. Biol. 29 1970 471 481
    • (1970) J. Theor. Biol. , vol.29 , pp. 471-481
    • Gordon, R.1    Bender, R.2    Herman, G.T.3
  • 12
    • 84901831004 scopus 로고    scopus 로고
    • Validation of noise models for single-cell transcriptomics
    • D. Grün, L. Kester, and A. van Oudenaarden Validation of noise models for single-cell transcriptomics Nat. Methods 11 2014 637 640
    • (2014) Nat. Methods , vol.11 , pp. 637-640
    • Grün, D.1    Kester, L.2    Van Oudenaarden, A.3
  • 13
    • 2342430677 scopus 로고    scopus 로고
    • The Cerberus/Dan-family protein Charon is a negative regulator of Nodal signaling during left-right patterning in zebrafish
    • H. Hashimoto, M. Rebagliati, N. Ahmad, O. Muraoka, T. Kurokawa, M. Hibi, and T. Suzuki The Cerberus/Dan-family protein Charon is a negative regulator of Nodal signaling during left-right patterning in zebrafish Development 131 2004 1741 1753
    • (2004) Development , vol.131 , pp. 1741-1753
    • Hashimoto, H.1    Rebagliati, M.2    Ahmad, N.3    Muraoka, O.4    Kurokawa, T.5    Hibi, M.6    Suzuki, T.7
  • 14
    • 84866953427 scopus 로고    scopus 로고
    • CEL-Seq: Single-cell RNA-Seq by multiplexed linear amplification
    • T. Hashimshony, F. Wagner, N. Sher, and I. Yanai CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification Cell Reports 2 2012 666 673
    • (2012) Cell Reports , vol.2 , pp. 666-673
    • Hashimshony, T.1    Wagner, F.2    Sher, N.3    Yanai, I.4
  • 15
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • W. Huang, B.T. Sherman, and R.A. Lempicki Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat. Protoc. 4 2009 44 57
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 16
    • 4043090758 scopus 로고    scopus 로고
    • Optical sectioning deep inside live embryos by selective plane illumination microscopy
    • J. Huisken, J. Swoger, F. Del Bene, J. Wittbrodt, and E.H.K. Stelzer Optical sectioning deep inside live embryos by selective plane illumination microscopy Science 305 2004 1007 1009
    • (2004) Science , vol.305 , pp. 1007-1009
    • Huisken, J.1    Swoger, J.2    Del Bene, F.3    Wittbrodt, J.4    Stelzer, E.H.K.5
  • 24
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • H. Li, and R. Durbin Fast and accurate long-read alignment with Burrows-Wheeler transform Bioinformatics 26 2010 589 595
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 25
    • 0037194765 scopus 로고    scopus 로고
    • Shh and Gli3 are dispensable for limb skeleton formation but regulate digit number and identity
    • Y. Litingtung, R.D. Dahn, Y. Li, J.F. Fallon, and C. Chiang Shh and Gli3 are dispensable for limb skeleton formation but regulate digit number and identity Nature 418 2002 979 983
    • (2002) Nature , vol.418 , pp. 979-983
    • Litingtung, Y.1    Dahn, R.D.2    Li, Y.3    Fallon, J.F.4    Chiang, C.5
  • 32
    • 0031959593 scopus 로고    scopus 로고
    • Expression of two zebrafish homologues of the murine Six3 gene demarcates the initial eye primordia
    • H.C. Seo, Drivenes, S. Ellingsen, and A. Fjose Expression of two zebrafish homologues of the murine Six3 gene demarcates the initial eye primordia Mech. Dev. 73 1998 45 57
    • (1998) Mech. Dev. , vol.73 , pp. 45-57
    • Seo, H.C.1    Drivenes2    Ellingsen, S.3    Fjose, A.4
  • 33
    • 0027278279 scopus 로고
    • Lithium perturbation and goosecoid expression identify a dorsal specification pathway in the pregastrula zebrafish
    • S.E. Stachel, D.J. Grunwald, and P.Z. Myers Lithium perturbation and goosecoid expression identify a dorsal specification pathway in the pregastrula zebrafish Development 117 1993 1261 1274
    • (1993) Development , vol.117 , pp. 1261-1274
    • Stachel, S.E.1    Grunwald, D.J.2    Myers, P.Z.3
  • 35
    • 38149126474 scopus 로고    scopus 로고
    • High-resolution in situ hybridization to whole-mount zebrafish embryos
    • C. Thisse, and B. Thisse High-resolution in situ hybridization to whole-mount zebrafish embryos Nat. Protoc. 3 2008 59 69
    • (2008) Nat. Protoc. , vol.3 , pp. 59-69
    • Thisse, C.1    Thisse, B.2
  • 37
    • 0035532141 scopus 로고    scopus 로고
    • Estimating the number of clusters in a data set via the gap statistic
    • 1-1411-4233
    • R. Tibshirani, and G. Walther Estimating the number of clusters in a data set via the gap statistic J. R. Statist. Soc B 63 2006 1-1411-4233
    • (2006) J. R. Statist. Soc B , vol.63
    • Tibshirani, R.1    Walther, G.2
  • 39
    • 57149097279 scopus 로고    scopus 로고
    • Initiation and propagation of posterior to anterior (PA) waves in zebrafish left-right development
    • X. Wang, and H.J. Yost Initiation and propagation of posterior to anterior (PA) waves in zebrafish left-right development Dev. Dyn. 237 2008 3640 3647
    • (2008) Dev. Dyn. , vol.237 , pp. 3640-3647
    • Wang, X.1    Yost, H.J.2
  • 40
    • 0033947661 scopus 로고    scopus 로고
    • The bHLH transcription factor hand2 plays parallel roles in zebrafish heart and pectoral fin development
    • D. Yelon, B. Ticho, M.E. Halpern, I. Ruvinsky, R.K. Ho, L.M. Silver, and D.Y. Stainier The bHLH transcription factor hand2 plays parallel roles in zebrafish heart and pectoral fin development Development 127 2000 2573 2582
    • (2000) Development , vol.127 , pp. 2573-2582
    • Yelon, D.1    Ticho, B.2    Halpern, M.E.3    Ruvinsky, I.4    Ho, R.K.5    Silver, L.M.6    Stainier, D.Y.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.