A Gene Expression Map of the Arabidopsis Root

Science

Volumn 302, Issue 5652, 2003, Pages 1956-1960

  Birnbaum, Kenneth ^a   Shasha, Dennis E ^b   Wang, Jean Y ^c   Jung, Jee W ^a   Lambert, Georgina M ^d   Galbraith, David W ^d   Benfey, Philip N ^c  

^a NEW YORK UNIVERSITY   (United States)

^b NEW YORK UNIVERSITY   (United States)

^c DUKE UNIVERSITY   (United States)

^d UNIVERSITY OF ARIZONA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC ENGINEERING; HORMONES; TISSUE;

GENE EXPRESSION;

GENES;

GENE EXPRESSION; ROOT;

ARABIDOPSIS; ARTICLE; CELL FATE; CHROMOSOMAL LOCALIZATION; GENE ACTIVITY; GENE CASSETTE; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE MAPPING; GENETICS; HORMONE RESPONSIVE ELEMENT; NONHUMAN; PLANT DEVELOPMENT; PLANT GENETICS; PLANT ROOT; PRIORITY JOURNAL; REVERSE GENETICS; TISSUE DIFFERENTIATION;

ARABIDOPSIS; CELL SEPARATION; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GREEN FLUORESCENT PROTEINS; LUMINESCENT PROTEINS; MERISTEM; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLANT GROWTH REGULATORS; PLANT ROOT CAP; PLANT ROOTS; PROTOPLASTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; RNA, PLANT; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS;

ARABIDOPSIS; EMBRYOPHYTA;

EID: 0347447343     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.1090022     Document Type: Article

References (26)

1. N. M. Kerk, T. Ceserani, S. L. Tausta, I. M. Sussex, T. M. Nelson, Plant Physiol. 132, 27 (2003).
2. T. Asano et al., Plant J. 32, 401 (2002).
3. D. Milioni, P. E. Sado, N. J. Stacey, K. Roberts, M. C. McCann, Plant Cell 14, 2813 (2002).
4. P. J. Roy, J. M. Stuart, J. Lund, S. K. Kim, Nature 418, 97S (2002).
5. H. Jasper et al., Dev. Cell 3, 511 (2002).
6. P. N. Benfey, J. W. Schiefelbein, Trends Genet. 10, 84 (1994).
7. Materials and methods are available as supporting material on Science Online.
8. J. Sheen, Plant Physiol. 127, 1466 (2001).
9. J. Quackenbush, Nature Rev. Genet. 2, 418 (2001).
10. The program Cluster was used in the analysis and downloaded from http://rana.lbl.gov/EisenSoftware.htm.
11. M. B. Eisen, P. T. Spellman, P. O. Brown, D. Botstein, Proc. Natl. Acad. Sci. U.S.A. 95, 14863 (1998).
12. K. Birnbaum et al., unpublished data.
13. T. Berleth, J. Mattsson, Curr. Opin. Plant Biol. 3, 406 (2000).
14. U. Wittstock, B. A. Halkier, Trends Plant Sci. 7, 263 (2002).
15. L. L. Murdock, R. E. Shade, J. Agric. Food Chem. 50, 6605 (2002).
16. B. A. Cohen, R. D. Mitra, J. D. Hughes, G. M. Church, Nature Genet. 26, 183 (2000).
17. H. Caron et al., Science 291, 1289 (2001).
18. A. P. Mahonen et al., Genes Dev. 14, 2938 (2000).
19. M. Bonke, S. Thitamadee, A. P. Mahonen, M. T. Hauser, Y. Helariutta, Nature, in press.
20. J. W. Wysocka-Diller, Y. Helariutta, H. Fukaki, J. E. Malamy, P. N. Benfey, Development 127, 595 (2000).
21. The plant line was generated by the Haseloff laboratory (www.plantsci.cam.ac.uk/Haseloff/Home.html). The lines were obtained through the Arabidopsis Information Resource (www.arabidopsis.org/).
22. The plant line was generated by the Haseloff laboratory (www.plantsci.cam.ac.uk/Haseloff/Home.html). The lines were obtained through the Arabidopsis Information Resource (www.arabidopsis.org/).
23. Y. Lin, J. Schiefelbein, Development 128, 3697 (2001).
24. M. M. Lee, J. Schiefelbein, Cell 99, 473 (1999).
25. E. Truernit, N. Sauer, Planta 196, 564 (1995).
26. We thank J. Malamy for valuable ideas on the protoplasting technique; H. Petri, K. Gordon, and J. Hirst for assistance in cell sorting; H. Dressman and the Duke Microarray Core Facility for assistance with microarrays; A. Pekka Mähönen and Y. Helariutta for use of the pWOL::GFP line and M. Cilia and D. Jackson for the pSUC2::GFP line, both before publication; M. Levesque for valuable discussions; and G. Sena and T. Nawy for photos. This work was supported by NSF grants MCB-020975 (P.N.B. and D.E.S.), DBI-9813360 (D.W.G.), DBI-0211857 (D.W.G.), and a Small Grant for Exploratory Research (P.N.B. and D.E.S.). The NIH supported K.B. with a postdoctoral fellowship grant (5 F32 GM20716-03).