Quantification of the transient and long-term response of Saccharomyces cerevisiae to carbon dioxide stresses of various intensities

Process Biochemistry

Volumn 49, Issue 11, 2014, Pages 1808-1818

  Richard, Lannig ^a   Guillouet, Stéphane E ^a   Uribelarrea, Jean Louis ^a  

^a UMR792 INGÉNIERIE DES SYSTÈMES BIOLOGIQUES ET DES PROCÉDÉS   (France)

Author keywords

Carbon dioxide stress; Chemostat; Dissolved carbon dioxide; Saccharomyces cerevisiae

Indexed keywords

YEAST;

DISSOLVED CARBON DIOXIDE;

CHEMOSTATS;

EID: 84908306846     PISSN: 13595113     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.procbio.2014.07.020     Document Type: Article

References (62)

1. J. Aguilera, J.P. Van Dijken, J.H. De Winde, and J.T. Pronk Carbonic anhydrase (Nce103p): an essential biosynthetic enzyme for growth of Saccharomyces cerevisiae at atmospheric carbon dioxide pressure Biochem J 391 2005 311 316
2. R.P. Jones, and P.F. Greenfield Effect of carbon dioxide on yeast growth and fermentation Enzyme Microb Technol 4 1982 210 223
3. L. Garcia-Gonzalez, A.H. Geeraerd, S. Spilimbergo, K. Elst, L. Van Ginneken, and J. Debevere High pressure carbon dioxide inactivation of microorganisms in foods: the past, the present and the future Int J Food Microbiol 117 2007 1 28
4. 2 of the growth and metabolism of micro-organisms J Appl Microbiol 67 1989 109 136
5. J. Zhang, T.A. Davis, M.A. Matthews, M.J. Drews, M. LaBerge, and Y.H. An Sterilization using high-pressure carbon dioxide J Supercrit Fluids 38 2006 354 372
6. R.S. Renger Carbon dioxide and its relevance to large-scale brewery fermentation 1991 Technical University of Delft
7. D.W. Karl, K.M. Roth, F.J. Schendel, V.D. Gooch, and B.J. Jordan Carbon dioxide effects on fuel alcohol fermentation B.C. Saha, J. Woodward, Fuels and chemicals from biomass vol. 666 1997 American Chemical Society Washington, DC 93 109
8. J. Aguilera, T. Petit, J.H. Winde, J.T. Pronk, and J.H. de Winde Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations FEMS Yeast Res 5 2005 579 593
9. J. Thibault, A. Leduy, and F. Côté Production of ethanol by Saccharomyces cerevisiae under high-pressure conditions Biotechnol Bioeng 30 1987 74 80
10. 2 on yeast growth and metabolism under continuous fermentation Biotechnol Lett 15 1993 189 194
11. K. Nagahisa, T. Nakajima, K. Yoshikawa, T. Hirasawa, Y. Katakura, and C. Furusawa DNA microarray analysis on Saccharomyces cerevisiae under high carbon dioxide concentration in fermentation process Biotechnol Bioprocess Eng 10 2005 451 461
12. I. Belo, R. Pinheiro, and M. Mota Fed-batch cultivation of Saccharomyces cerevisiae in a hyperbaric bioreactor Biotechnol Prog 19 2003 665 671
13. A.F. Campelo, and I. Belo Fermentative capacity of baker's yeast exposed to hyperbaric stress Biotechnol Lett 26 2004 1237 1240
14. J.M. Otero Romero Industrial systems biology and metabolic engineering of Saccharomyces cerevisiae. A case study in succinic acid production 2009 Chalmers University Göteborg
15. F.O. Aboka, W.A. van Winden, M.M. Reginald, W.M. van Gulik, M. van de Berg, and A. Oudshoorn Identification of informative metabolic responses using a minibioreactor: a small step change in the glucose supply rate creates a large metabolic response in Saccharomyces cerevisiae Yeast 29 2012 95 110
16. D. Krook, M. Mashego, W. Van Gulik, and J.J. Heijnen Effect of dissolved carbon dioxide concentration on the metabolism of Saccharomyces cerevisiae 2004 Technical University of Delft
17. M.R. Mashego Robust experimental methods to study in-vivo pre-steady state kinetics of primary metabolism in Saccharomyces cerevisiae 2005 Technical University of Delft
18. S.S.L. Chen, F. Gutmains, and F. Gutmanis Carbon dioxide inhibition of yeast growth in biomass production Biotechnol Bioeng 18 1976 1455 1462
19. A. Baez, N. Flores, F. Bolívar, and O.T. Ramírez Metabolic and transcriptional response of recombinant Escherichia coli to elevated dissolved carbon dioxide concentrations Biotechnol Bioeng 104 2009 102 110
20. 2 on the survival of yeast cells J Biotechnol 39 1995 229 237
21. M.T.A.P. Kresnowati, C.M. Suarez-Mendez, W.A. van Winden, W.M. van Gulik, and J.J. Heijnen Quantitative physiological study of the fast dynamics in the intracellular pH of Saccharomyces cerevisiae in response to glucose and ethanol pulses Metab Eng 10 2008 39 54
22. R. Orij, M.L. Urbanus, F.J. Vizeacoumar, G. Giaever, C. Boone, and C. Nislow Genome-wide analysis of intracellular pH reveals quantitative control of cell division rate by pH(c) in Saccharomyces cerevisiae Genome Biol 13 2012 R80
23. R. Orij, S. Brul, and G.J. Smits Intracellular pH is a tightly controlled signal in yeast Biochim Biophys Acta: Gen Subj 1810 2011 933 944
24. C. Bäumchen, A. Knoll, B. Husemann, J. Seletzky, B. Maier, and C. Dietrich Effect of elevated dissolved carbon dioxide concentrations on growth of Corynebacterium glutamicum on d-glucose and l-lactate J Biotechnol 128 2007 868 874
25. S. Spilimbergo, N. Elvassore, and A. Bertucco Microbial inactivation by high-pressure J Supercrit Fluids 22 2002 55 63
26. S.A. Simon, and J. Gutknecht Solubility of carbon dioxide in lipid bilayer membranes and organic solvents Biochim Biophys Acta: Biomembr 596 1980 352 358
27. 2 concentration changes on lipids and fatty acids of Saccharomyces cerevisiae Arch Mikrobiol 66 1969 34 39
28. A.B. Canelas, A. ten Pierick, C. Ras, R.M. Seifar, J.C. van Dam, and W.M. van Gulik Quantitative evaluation of intracellular metabolite extraction techniques for yeast metabolomics Anal Chem 81 2009 7379 7389
29. K. Van Eunen, J. Bouwman, P. Daran-Lapujade, J. Postmus, A.B. Canelas, and F.I.C. Mensonides Measuring enzyme activities under standardized in vivo-like conditions for systems biology FEBS J 277 2010 749 760
30. O. Spadiut, S. Rittmann, C. Dietzsch, and C. Herwig Dynamic process conditions in bioprocess development Eng Life Sci 13 2013 88 101
31. H. Taymaz-Nikerel, W.M. van Gulik, and J.J. Heijnen Escherichia coli responds with a rapid and large change in growth rate upon a shift from glucose-limited to glucose-excess conditions Metab Eng 13 2011 307 318
32. S. Alfenore, C. Molina-Jouve, S.E. Guillouet, J-L. Uribelarrea, G. Goma, and L. Benbadis Improving ethanol production and viability of Saccharomyces cerevisiae by a vitamin feeding strategy during fed-batch process Appl Microbiol Biotechnol 60 2002 67 72
33. J.L. Parrou, and J. François A simplified procedure for a rapid and reliable assay of both glycogen and trehalose in whole yeast cells Anal Biochem 248 1997 186 188
34. J.L. Uribelarrea, S. Pacaud, and G. Goma New method for measuring the cell water content by thermogravimetry Biotechnol Lett 7 1985 75 80
35. J. Van Dijken, J. Bauer, L. Brambilla, P. Duboc, J. Francois, and C. Gancedo An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains Enzyme Microb Technol 26 2000 706 714
36. D. Visser, G.A. van Zuylen, J.C. van Dam, A. Oudshoorn, M.R. Eman, and C. Ras Rapid sampling for analysis of in vivo kinetics using the BioScope: a system for continuous-pulse experiments Biotechnol Bioeng 79 2002 674 681
37. S. Sunya, F. Delvigne, J-L. Uribelarrea, C. Molina-Jouve, and N. Gorret Comparison of the transient responses of Escherichia coli to a glucose pulse of various intensities Appl Microbiol Biotechnol 95 2012 1021 1034
38. R.T. Van der Heijden, J.J. Heijnen, C. Hellinga, B. Romein, and K.C. Luyben Linear constraint relations in biochemical reaction systems. I. Classification of the calculability and the balanceability of conversion rates Biotechnol Bioeng 43 1994 11 20
39. J. Pagliardini, G. Hubmann, C. Bideaux, S. Alfenore, E. Nevoigt, and S.E. Guillouet Quantitative evaluation of yeast's requirement for glycerol formation in very high ethanol performance fed-batch process Microb Cell Fact 9 2010 36
40. H.H.W. Sillje, J.W.G. Paalman, E.G. ter Schure, S.Q.B. Olsthoorn, A.J. Verkleij, and J. Boonstra Function of trehalose and glycogen in cell cycle progression and cell viability in Saccharomyces cerevisiae J Bacteriol 181 1999 396 400
41. G.A. Hughmark Power requirements and interfacial area in gas-liquid turbine agitated systems Ind Eng Chem Process Des Dev 19 1980 638 641
42. R.M. Zelle, E. de Hulster, W. Kloezen, J.T. Pronk, and A.J.A. van Maris Key process conditions for production of C(4) dicarboxylic acids in bioreactor batch cultures of an engineered Saccharomyces cerevisiae strain Appl Environ Microbiol 76 2010 744 750
43. 2 Plant Physiol 112 1996 1349 1355
44. J. Swierczynski, and E.J. Davis Activation of succinate dehydrogenase by bicarbonate Biochem Biophys Res Commun 85 1978 1173 1179
45. R.J.A. Wanders, A.J. Meijer, A.K. Groen, and J.M. Tager Bicarbonate and the pathway of glutamate oxidation in isolated rat-liver mitochondria Eur J Biochem 133 1983 245 254
46. W.P. Zeylemaker, A.D.M. Klaasse, E.C. Slater, and C. Veeger Studies on succinate dehydrogenase VI. Inhibition by monocarboxylic acids Biochim Biophys Acta: Enzymol 198 1970 415 422
47. R. Orij, J. Postmus, A. Ter Beek, S. Brul, and G.J. Smits In vivo measurement of cytosolic and mitochondrial pH using a pH-sensitive GFP derivative in Saccharomyces cerevisiae reveals a relation between intracellular pH and growth Microbiology 155 2009 268 278
48. J. Marc, D. Feria-Gervasio, J-R. Mouret, and S.E. Guillouet Impact of oleic acid as co-substrate of glucose on short and long-term Crabtree effect in Saccharomyces cerevisiae Microb Cell Fact 12 2013 83
49. M.T.A.P. Kresnowati, W.A. van Winden, W.M. van Gulik, and J.J. Heijnen Energetic and metabolic transient response of Saccharomyces cerevisiae to benzoic acid FEBS J 275 2008 5527 5541
50. R. Serrano Plasma membrane ATPase of fungi and plants as a novel type of proton pump Curr Top Cell Regul 23 1984 87 126
51. D.S. Perlin, M.J.D. San Francisco, C.W. Slayman, and B.P. Rosen H+/ATP stoichiometry of proton pumps from Neurospora crassa and Escherichia coli Arch Biochem Biophys 248 1986 53 61
52. C. Holyoak, M. Stratford, Z. McMullin, M. Cole, K. Crimmins, and A. Brown Activity of the plasma membrane H(+)-ATPase and optimal glycolytic flux are required for rapid adaptation and growth of Saccharomyces cerevisiae in the presence of the weak-acid preservative sorbic acid Appl Environ Microbiol 62 1996 3158 3164
53. C. Verduyn, E. Postma, W.A. Scheffers, and J.P. Van Dijken Effect of benzoic acid on metabolic fluxes in yeasts: a continuous-culture study on the regulation of respiration and alcoholic fermentation Yeast 8 1992 501 517
54. A. Ullah, R. Orij, S. Brul, and G.J. Smits Quantitative analysis of the modes of growth inhibition by weak organic acids in Saccharomyces cerevisiae Appl Environ Microbiol 78 2012 8377 8387
55. R. Zhao, and R.A.F. Reithmeier Expression and characterization of the anion transporter homologue YNL275w in Saccharomyces cerevisiae Am J Physiol Cell Physiol 281 2001 C33 C45
56. R. López, E. Enríquez, and A. Peña Effects of weak acids on cation accumulation, delta pH and delta psi in yeast Yeast 15 1999 553 562
57. H. Ryan, J. Ryan, and W. O'Connor The effect of diffusible acids on potassium ion uptake by yeast Biochem J 125 1971 1081 1085
58. H. Ryan, J. Ryan, and W. O'Connor The role of intracellular pH in the regulation of cation exchanges in yeast Biochem J 128 1972 139 146
59. C.H. Ko, and R.F. Gaber TRK1 and TRK2 encode structurally related K+ transporters in Saccharomyces cerevisiae Mol Cell Biol 11 1991 4266 4273
60. Q. Guan, S. Haroon, D.G. Bravo, J.L. Will, and A.P. Gasch Cellular memory of acquired stress resistance in Saccharomyces cerevisiae Genetics 192 2012 495 505
61. C. Verduyn Energetic aspects of metabolic fluxes in yeasts 1992 Delft Technical University
62. A. Baez, N. Flores, F. Bolívar, and O.T. Ramírez Simulation of dissolved CO(2) gradients in a scale-down system: a metabolic and transcriptional study of recombinant Escherichia coli Biotechnol J 6 2011 959 967