Carbonic anhydrase (Nce103p): An essential biosynthetic enzyme for growth of Saccharomyces cerevisiae at atmospheric carbon dioxide pressure

Biochemical Journal

Volumn 391, Issue 2, 2005, Pages 311-316

  Aguilera, Jaime ^a   Van Dijken, Johannes P ^a,b   De Winde, Johannes H ^a,c   Pronk, Jack T ^a  

^a DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^b Bird Engineering BV   (Netherlands)

^c DSM RESOLVE   (Netherlands)

Author keywords

Carbon dioxide; Carbonic anhydrase; Carboxylase; Carboxylation; CPSase; Saccharomyces cerevisiae

Indexed keywords

CARBON DIOXIDE; CARBOXYLATION; CATALYSIS; GENES; GLUCOSE; GROWTH KINETICS; NUTRITION;

CARBONIC ANHYDRASE; CARBOXYLASE; CPSASE; SACCHAROMYCES CEREVISIAE;

ENZYMES;

CARBAMOYL PHOSPHATE SYNTHASE; CARBON DIOXIDE; CARBONATE DEHYDRATASE; GLUCOSE; PYRUVATE CARBOXYLASE;

ARTICLE; BIOSYNTHESIS; CARBOXYLATION; CHEMICAL REACTION; CHEMOSTAT; CONTROLLED STUDY; FERMENTATION; NONHUMAN; PRESSURE; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; STEADY STATE;

ATMOSPHERIC PRESSURE; CARBON DIOXIDE; CARBONIC ANHYDRASES; GENE DELETION; GENE EXPRESSION REGULATION, ENZYMOLOGIC; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

SACCHAROMYCES CEREVISIAE;

EID: 27444438834     PISSN: 02646021     EISSN: None     Source Type: Journal    
DOI: 10.1042/BJ20050556     Document Type: Article

References (50)

1. Jones, R. P. and Greenfield, P. F. (1982) Effect of carbon dioxide on yeast growth and fermentation. Enzyme Microb. Technol. 4, 210-223
2. Liljas, A. and Laurberg, M. (2000) A wheel invented three times. The molecular structures of the three carbonic anhydrases. EMBO Rep. 1, 16-17
3. Tripp, B. C., Smith, K. and Ferry, J. G. (2001) Carbonic anhydrase: new insights for an ancient enzyme. J. Biol. Chem. 276, 48615-48618
4. Potter, C. P. and Harris, A. L. (2003) Diagnostic, prognostic and therapeutic implications of carbonic anhydrases in cancer. Br. J. Cancer 89, 2-7
5. Dodgson, S. J. (1991) The Carbonic Anhydrases; Cellular Physiology and Molecular Genetics, Plenum Press, New York
6. Chegwidden, W. R., Carter, N. D. and Edwards, Y. H. (2000) The Carbonic Anhydrases: New Horizons, Birkhauser, Basel
7. Sultemeyer, D., Schmidt, C. and Fock, H. P. (1993) Carbonic anhydrases in higher plants and aquatic microorganisms. Physiol. Plant. 88, 179-190
8. Tsuzuki, M. and Miyachi, S. (1989) The function of carbonic anhydrase in aquatic photosynthesis. Aquat. Bot. 34, 85-104
9. 2 concentrations. J. Bacteriol. 184, 5018-5026
10. Merlin, C., Masters, M., McAteer, S. and Coulson, A. (2003) Why is carbonic anhydrase essential to Escherichia coli? J. Bacteriol. 185, 6415-6424
11. 2 partial pressure. Biosci. Biotech. Biochem. 67, 919-922
12. Mitsuhashi, S., Ohnishi, J., Hayashi, M. and Ikeda, M. (2004) A gene homologous to beta-type carbonic anhydrase is essential for the growth of Corynebacterium glutamicum under atmospheric conditions. Appl. Microbiol. Biotechnol. 63, 592-601
13. Dodgson, S. J., Forster, R. E., Schwed, D. A. and Storey, B. T. (1983) Contribution of matrix carbonic-anhydrase to citrulline synthesis in isolated guinea-pig liver-mitochondria. J. Biol. Chem. 258, 7696-7701
14. Lynch, C. J., Fox, H., Hazen, S. A., Stanley, B. A., Dodgson, S. and Lanoue, K. F. (1995) Role of hepatic carbonic anhydrase in de novo lipogenesis. Biochem. J. 310, 197-202
15. Hazen, S. A., Waheed, A., Sly, W. S., Lanoue, K. F. and Lynch, C. J. (1996) Differentiation-dependent expression of CA V and the role of carbonic anhydrase isozymes in pyruvate carboxylation in adipocytes. FASEB J. 10, 481-490
16. Cleves, A. E., Cooper, D. N., Barondes, S. H. and Kelly, R. B. (1996) A new pathway for protein export in Saccharomyces cerevisiae. J. Cell Biol. 133, 1017-1026
17. Götz, R., Gnann, A. and Zimmermann, F. K. (1999) Deletion of the carbonic anhydrase-like gene NCE103 of the yeast Saccharomyces cerevisiae causes an oxygen-sensitive growth defect. Yeast 15, 855-864
18. Clark, D., Rowlett, R. S., Coleman, J. R. and Klessig, D. F. (2004) Complementation of the yeast deletion mutant DeltaNCE103 by members of the beta class of carbonic anhydrases is dependent on carbonic anhydrase activity rather than on antioxidant activity. Biochem. J. 379, 609-615
19. Amoroso, G., Morell-Avrahov, L., Müller, D., Klug, K. and Sültemeyer, D. (2005) The gene NCE103 (YNL036w) from Saccharomyces cerevisiae encodes a functional carbonic anhydrase and its transcription is regulated by the concentration of inorganic carbon in the medium. Mol. Microbiol. 56, 549-558
20. Aguilera, J., Petit, T., de Winde, J. H. and Pronk, J. T. (2005) Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations. FEMS Yeast Res. 5, 579-593
21. Gasch, A. P., Spellman, P. T., Kao, C. M., Carmel-Harel, O., Eisen, M. B., Storz, G., Botstein, D. and Brown, P. O. (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell 11, 4241-4257
22. Causton, H. C., Ren, B., Koh, S. S., Harbison, C. T., Kanin, E., Jennings, E. G., Lee, T. I., True, H. L., Lander, E. S. and Young, R. A. (2001) Remodeling of yeast genome expression in response to environmental changes. Mol. Biol. Cell 12, 323-337
23. Epstein, C. B., Waddle, J. A., Hale, W., Dave, V., Thornton, J., Macatee, T. L., Garner, H. R. and Butow, R. A. (2001) Genome-wide responses to mitochondrial dysfunction. Mol. Biol. Cell 12, 297-308
24. 2 in the inhibition of Escherichia coli growth by cyanate. J. Bacteriol. 177, 3213-3219
25. Wach, A., Brachat, A., Pohlmann, R. and Philippsen, P. (1994) New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast 10, 1793-1808
26. Guldener, U., Heck, S., Fiedler, T., Beinhauer, J. and Hegemann, J. H. (1996) A new efficient gene disruption cassette for repeated use in budding yeast. Nucleic Acids Res. 24, 2519-2524
27. Verduyn, C., Postma, E., Scheffers, W. A. and van Dijken, J. P. (1992) Effect of benzoic acid on metabolic fluxes in yeasts: a continuous-culture study on the regulation of respiration and alcoholic fermentation. Yeast 8, 501-517
28. Van den Berg, M. A., Jong-Gubbels, P., Kortland, C. J., van Dijken, J. P., Pronk, J. T. and Steensma, H. Y. (1996) The two acetyl-coenzyme A synthetases of Saccharomyces cerevisiae differ with respect to kinetic properties and transcriptional regulation. J. Biol. Chem. 271, 28953-28959
29. Boer, V. M., de Winde, J. H., Pronk, J. T. and Piper, M. D. (2003) The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur. J. Biol. Chem. 278, 3265-3274
30. Aguilera, J., Rodriguez-Vargas, S. and Prieto, J. A. (2005) The HOG MAP kinase pathway is required for the induction of methylglyoxal-responsive genes and determines methylglyoxal resistance in Saccharomyces cerevisiae. Mol. Microbiol. 56, 228-239
31. Burke, D., Dawson, D. and Stearns, T. (2000) Methods in Yeast Genetics, Cold Spring Harbor Laboratory Press, Plainview, NY
32. Neidhardt, F. C., Bloch, P. L. and Smith, D. F. (1974) Culture medium for enterobacteria. J. Bacteriol. 119, 736-747
33. Repaske, R., Repaske, A. C. and Mayer, R. D. (1974) Carbon dioxide control of lag period and growth of Streptococcus sanguis. J. Bacteriol. 117, 652-659
34. Stucka, R., Dequin, S., Salmon, J. M. and Gancedo, C. (1991) DNA sequences in chromosome II and chromosome VII code for pyruvate carboxylase isoenzymes in Saccharomyces cerevisiae - analysis of pyruvate carboxylase-deficient strains. Mol. Gen. Genet. 229, 307-315
35. Brewster, N. K., Val, D. L., Walker, M. E. and Wallace, J. C. (1994) Regulation of pyruvate-carboxylase isozyme (Pyc1, Pyc2) gene-expression in Saccharomyces cerevisiae during fermentative and nonfermentative growth. Arch. Biochem. Biophys. 311, 62-71
36. Roggenkamp, R., Numa, S. and Schweizer, E. (1980) Fatty acid-requiring mutant of Saccharomyces cerevisiae defective in acetyl-CoA carboxylase. Proc. Natl. Acad. Sci. U.S.A. 77, 1814-1817
37. Schweizer, E. and Bolling, H. (1970) A Saccharomyces cerevisiae mutant defective in saturated fatty acid biosynthesis. Proc. Natl. Acad. Sci. U.S.A. 67, 660-666
38. Lacroute, F., Pierard, A., Grenson, M. and Wiame, J. M. (1965) Biosynthesis of carbamoyl phosphate in Saccharomyces cerevisiae. J. Gen. Microbiol. 40, 127-142
39. Woods, R. A. (1969) Response of ad-2 mutants of Saccharomyces cerevisiae to carbon dioxide. Mol. Gen. Genet. 105, 314-316
40. Tai, S. L., Boer, V. M., Daran-Lapujade, P., Walsh, M. C., de Winde, J. H., Daran, J. M. and Pronk, J. T. (2005) Two-dimensional transcriptome analysis in chemostat cultures. Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae. J. Biol. Chem. 280, 437-447
41. 2. J. Bacteriol. 135, 1162-1164
42. Penverne, B., Belkaid, M. and Herve, G. (1994) In situ behavior of the pyrimidine pathway enzymes in Saccharomyces cerevisiae. 4. The channeling of carbamylphosphate to aspartate transcarbamylase and its partition in the pyrimidine and arginine pathways. Arch. Biochem. Biophys. 309, 85-93
43. Mishina, M., Roggenkamp, R. and Schweizer, E. (1980) Yeast mutants defective in acetyl-coenzyme-A carboxylase and biotin-apocarboxylase ligase. Eur. J. Biochem. 111, 79-87
44. Schneiter, R., Hitomi, M., Ivessa, A. S., Fasch, E. V., Kohlwein, S. D. and Tartakoff, A. M. (1996) A yeast acetyl coenzyme A carboxylase mutant links very-long-chain fatty acid synthesis to the structure and function of the nuclear membrane-pore complex. Mol. Cell. Biol. 16, 7161-7172
45. Whitney, P. A. and Cooper, T. G. (1972) Urea carboxylase and allophanate hydrolase. Two components of adenosine triphosphate:urea amido-lyase in Saccharomyces cerevisiae. J. Biol. Chem. 247, 1349-1353
46. Charles, H. P. and Roberts, G. A. (1968) Carbon dioxide as a growth factor for mutants of Escherichia coli. J. Gen. Microbiol. 51, 211-224
47. Buecher, E. J. and Phaff, H. J. (1970) Growth of Saccharomycopsis Schionning under continuous gassing. J. Bacteriol. 104, 133-137
48. Zierdt, C. H., Detlefson, C., Muller, J. and Waggie, K. S. (1988) Cyniclomyces guttulatus (Saccharomycopsis guttulata). culture, ultrastructure and physiology. Antonie Van Leeuwenhoek 54, 357-366
49. Giordano, M., Norici, A., Forssen, M., Eriksson, M. and Raven, J. A. (2003) An anaplerotic role for mitochondrial carbonic anhydrase in Chlamydomonas reinhardtii. Plant Physiol. 132, 2126-2134
50. Holm, H., Staedt, E., Schlickeiser, G., Gunther, H. J. and Leweling, H. (1995) Substrate balances across colonic carcinomas in humans. Cancer Res. 55, 1373-1378