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Volumn 104, Issue 1, 2009, Pages 102-110

Metabolic and transcriptional response of recombinant Escherichia coli to elevated dissolved carbon dioxide concentrations

Author keywords

Acetate accumulation; Acid resistance; Decarboxylation carboxylation reactions; Dissolved carbon dioxide; E. coli; GFP production; Quantitative RT PCR; Stress growth conditions; Transcription

Indexed keywords

ACETATE ACCUMULATION; DECARBOXYLATION/CARBOXYLATION REACTIONS; DISSOLVED CARBON DIOXIDE; E. COLI; GFP PRODUCTION; QUANTITATIVE RT-PCR; STRESS GROWTH CONDITIONS;

EID: 69249095394     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.22379     Document Type: Article
Times cited : (38)

References (31)
  • 1
    • 15044364688 scopus 로고    scopus 로고
    • Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations
    • DOI 10.1016/j.femsyr.2004.09.009, Fungal Physiology, Moving Towards Fungal Physionomics
    • Aguilera J, Petit T, de Winde JH, Pronk JT. 2005. Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations. FEMS Yeast Res 5:579-593. (Pubitemid 40380698)
    • (2005) FEMS Yeast Research , vol.5 , Issue.6-7 , pp. 579-593
    • Aguilera, J.1    Petit, T.2    De Winde, J.H.3    Pronk, J.T.4
  • 2
    • 0035088098 scopus 로고    scopus 로고
    • Global analysis of Escherichia coli gene expression during the acetate-induced acid tolerance response
    • DOI 10.1128/JB.183.7.2178-2186.2001
    • Arnold CN, McElhanon J, Lee A, Leonhart R, Siegele DA. 2001. Global analysis of Escherichia coli gene expression during acetate-induced acid tolerance response. J Bacteriol 183:2178-2186. (Pubitemid 32240385)
    • (2001) Journal of Bacteriology , vol.183 , Issue.7 , pp. 2178-2186
    • Arnold, C.N.1    McElhanon, J.2    Lee, A.3    Leonhart, R.4    Siegele, D.A.5
  • 3
    • 0029764884 scopus 로고    scopus 로고
    • Inactivation of Escherichia coli by carbon dioxide under pressure
    • Ballestra P, Abreu Da Silva A, Cuq JL. 1996. Inactivation of Escherichia coli by carbon dioxide under pressure. J Food Sci 61:829-831. (Pubitemid 26310662)
    • (1996) Journal of Food Science , vol.61 , Issue.4 , pp. 829-831
    • Ballestra, P.1    Abreu Da Silva, A.2    Cuq, J.L.3
  • 4
    • 33847367117 scopus 로고    scopus 로고
    • Effect of elevated dissolved carbon dioxide concentrations on growth of Corynebacterium glutamicum on d-glucose and l-lactate
    • DOI 10.1016/j.jbiotec.2007.01.001, PII S0168165607000338
    • Bäumchen C, Knoll A, Husemann B, Seletzky J, Maier B, Dietrich C, Amoabediny G, Büchs J. 2007. Effect of dissolved carbon dioxide concentrations on growth of Corynebacterium glutamicum on D-glucose and L-lactate. J Biotechnol 128:868-874. (Pubitemid 46341487)
    • (2007) Journal of Biotechnology , vol.128 , Issue.4 , pp. 868-874
    • Baumchen, C.1    Knoll, A.2    Husemann, B.3    Seletzky, J.4    Maier, B.5    Dietrich, C.6    Amoabediny, G.7    Buchs, J.8
  • 5
    • 0037018873 scopus 로고    scopus 로고
    • Oxygen enriched air supply in Escherichia coli processes: Production of biomass and recombinant human growth hormone
    • DOI 10.1016/S0141-0229(01)00490-2, PII S0141022901004902
    • Castan A, Näsman A, Enfors S. 2002. Oxygen enriched air supply in Escherichia coli processes: Production of biomass and recombinant human growth hormone. Enzyme Microb Technol 30:847-854. (Pubitemid 34655406)
    • (2002) Enzyme and Microbial Technology , vol.30 , Issue.7 , pp. 847-854
    • Castan, A.1    Nasman, A.2    Enfors, S.-O.3
  • 7
    • 0028355910 scopus 로고
    • Expression of Escherichia coli pyruvate oxidase (PoxB) dependens on the sigma factor encoded by the rpoS (katF) gene
    • Chang YY, Wang AY, Cronan JE, Jr. 1994. Expression of Escherichia coli pyruvate oxidase (PoxB) dependens on the sigma factor encoded by the rpoS (katF) gene. Mol Microbiol 11:1019-1028.
    • (1994) Mol Microbiol , vol.11 , pp. 1019-1028
    • Chang, Y.Y.1    Wang, A.Y.2    Cronan Jr., J.E.3
  • 8
    • 0027690078 scopus 로고
    • Dissolved carbon dioxide measurement and its correlation with operating parameters in fermentation processes
    • Dahod SK. 1993. Dissolved carbon dioxide measurement and its correlation with operating parameters in fermentation processes. Biotechnol Prog 9:655-660.
    • (1993) Biotechnol Prog , vol.9 , pp. 655-660
    • Dahod, S.K.1
  • 9
    • 23344450789 scopus 로고    scopus 로고
    • Characterization of the acetate-producing pathways in Escherichia coli
    • DOI 10.1021/bp050073s
    • Dittrich CR, Bennett GN, San KY. 2005. Characterization of the acetate-producing pathways in Escherichia coli. Biotechnol Prog 21:1062-1067. (Pubitemid 41102246)
    • (2005) Biotechnology Progress , vol.21 , Issue.4 , pp. 1062-1067
    • Dittrich, C.R.1    Bennett, G.N.2    San, K.-Y.3
  • 10
    • 0024473049 scopus 로고
    • 2 of the growth and metabolism of micro-organisms
    • 2 of the growth and metabolism of micro-organisms. J Appl Bacteriol 67:109-136.
    • (1989) J Appl Bacteriol , vol.67 , pp. 109-136
    • Dixon, N.M.1    Kell, D.B.2
  • 11
    • 39049114629 scopus 로고    scopus 로고
    • Effects of dissolved carbon dioxide on growth, nutrient consumption, cephalosporin C synthesis and morphology of Acremonium chrysogenum in batch cultures
    • DOI 10.1016/j.enzmictec.2007.10.012, PII S0141022907003390
    • El-Sabbagh N, McNeil B, Harvey LM. 2006. Dissolved carbon dioxide effects on growth, nutrient consumption, penicillin synthesis and morphology in batch cultures of Penicillium chrysogenum. Enzyme Microb Technol 39:185-190. (Pubitemid 351240984)
    • (2008) Enzyme and Microbial Technology , vol.42 , Issue.4 , pp. 315-324
    • El-Sabbagh, N.1    Harvey, L.M.2    McNeil, B.3
  • 12
    • 15244348667 scopus 로고    scopus 로고
    • Adaptation for fast growth on glucose by differential expression of central carbon metabolism and gal regulon genes in an Escherichia coli strain lacking the phosphoenolpyruvate:carbohydrate phosphotransferase system
    • DOI 10.1016/j.ymben.2004.10.002, PII S109671760400076X
    • Flores N, Flores S, Escalante A, de Anda R, Leal L, Malpica R, Georgellis D, Gosset G, Bolívar F. 2005. Adaptation for fast growth on glucose by differential expression of central carbon metabolism and gal regulon genes in an Escherichia coli strain lacking the phosphoenolpyruvate: Carbohydrate phosphotransferase system. Metab Eng 7:70-87. (Pubitemid 40387557)
    • (2005) Metabolic Engineering , vol.7 , Issue.2 , pp. 70-87
    • Flores, N.1    Flores, S.2    Escalante, A.3    De Anda, R.4    Leal, L.5    Malpica, R.6    Georgellis, D.7    Gosset, G.8    Bolivar, F.9
  • 14
    • 33846906037 scopus 로고    scopus 로고
    • A comparison of high cell density fed-batch fermentations involving both induced and non-induced recombinant escherichia coli under well-mixed small-scale and simulated poorly mixed large-scale conditions
    • DOI 10.1002/bit.21127
    • Hewitt CJ, Onyeaka H, Lewis G, Taylor IW, Nienow AW. 2007. A comparison of high cell density fed-batch fermentations involving both induced and non-induced recombinant Escherichia coli under well-mixed small-scale and simulated poorly mixed large-scale conditions. Biotechnol Bioeng 96:495-505. (Pubitemid 46232355)
    • (2007) Biotechnology and Bioengineering , vol.96 , Issue.3 , pp. 495-505
    • Hewitt, C.J.1    Onyeaka, H.2    Lewis, G.3    Taylor, I.W.4    Nienow, A.W.5
  • 15
    • 34249657467 scopus 로고    scopus 로고
    • Stable Intermediate States and High Energy Barriers in the Unfolding of GFP
    • DOI 10.1016/j.jmb.2007.04.039, PII S0022283607005165
    • Huang J, Craggs TD, Christodoulou J, Jackson SE. 2007. Stable intermediate state and high energy barriers in the unfolding of GFP. J Mol Biol 370:356-371. (Pubitemid 46829211)
    • (2007) Journal of Molecular Biology , vol.370 , Issue.2 , pp. 356-371
    • Huang, J.-R.1    Craggs, T.D.2    Christodoulou, J.3    Jackson, S.E.4
  • 16
    • 0020164089 scopus 로고
    • Effect of carbon dioxide on yeast growth and fermentation
    • Jones RP, Greenfield PF. 1982. Effect of carbon dioxide on yeast growth and fermentation. Enzyme Microb Technol 4:210-223.
    • (1982) Enzyme Microb Technol , vol.4 , pp. 210-223
    • Jones, R.P.1    Greenfield, P.F.2
  • 17
    • 33645580745 scopus 로고    scopus 로고
    • Transcriptional and metabolic response of recombinant Escherichia coli to spatial dissolved oxygen tension gradients simulated in a scale-downs system
    • Lara AR, Leal L, Flores N, Gosset G, Bolívar F, Ramírez OT. 2006a. Transcriptional and metabolic response of recombinant Escherichia coli to spatial dissolved oxygen tension gradients simulated in a scale-downs system. Biotechnol Bioeng 93:372-385.
    • (2006) Biotechnol Bioeng , vol.93 , pp. 372-385
    • Lara, A.R.1    Leal, L.2    Flores, N.3    Gosset, G.4    Bolívar, F.5    Ramírez, O.T.6
  • 18
    • 33747120984 scopus 로고    scopus 로고
    • Engineering Escherichia coli to improve culture performance and reduce formation of by-products during recombinant protein production under transient intermittent anaerobic conditions
    • Lara AR, Vazquez-Limón C, Gosset G, Bolívar F, López-Munguia A, Ramírez OT. 2006b. Engineering Escherichia coli to improve culture performance and reduce formation of by-products during recombinant protein production under transient intermittent anaerobic conditions. Biotechnol Bioeng 94:1164-1175.
    • (2006) Biotechnol Bioeng , vol.94 , pp. 1164-1175
    • Lara, A.R.1    Vazquez-Limón, C.2    Gosset, G.3    Bolívar, F.4    López-Munguia, A.5    Ramírez, O.T.6
  • 19
    • 33644558689 scopus 로고    scopus 로고
    • 13C-labeling experiments
    • DOI 10.1016/j.jbiotec.2005.09.016, PII S0168165605006255
    • Li M, Ho PY, Yao S, Shimizu K. 2006. Effect of lpdA gene knockout on the metabolism in Escherichia coli based on enzyme activities, intracellular metabolite concentrations and metabolic flux analysis by 13C-labeling experiments. J Biotechnol 122:254-266. (Pubitemid 43306691)
    • (2006) Journal of Biotechnology , vol.122 , Issue.2 , pp. 254-266
    • Li, M.1    Ho, P.Y.2    Yao, S.3    Shimizu, K.4
  • 20
    • 0035710746 scopus 로고    scopus 로고
    • -Delta Delta CT method
    • DOI 10.1006/meth.2001.1262
    • Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25:402-408. (Pubitemid 34164012)
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 21
    • 0141566454 scopus 로고    scopus 로고
    • GadE (YhiE) activates glutamate decarboxylase-dependent acid resistance in Escherichia coli K-12
    • DOI 10.1046/j.1365-2958.2003.03633.x
    • Ma Z, Gong S, Richard H, Tucker DL, Conway T, Foster JW. 2003. GadE (YhiE) activates glutamate decarboxylase-dependent acid resistance in Escherichia coli K-12. Mol Microbiol 49:1309-1320. (Pubitemid 37153499)
    • (2003) Molecular Microbiology , vol.49 , Issue.5 , pp. 1309-1320
    • Ma, Z.1    Gong, S.2    Richard, H.3    Tucker, D.L.4    Conway, T.5    Foster, J.W.6
  • 22
    • 0037790991 scopus 로고    scopus 로고
    • Interfacial area and volumetric mass transfer coefficient in a bubble reactor at elevated pressures
    • DOI 10.1016/S0009-2509(03)00085-X
    • Maalej S, Benadda B, Otterbein M. 2003. Interfacial area and volumetric mass transfer coefficient in a bubble reactor at elevated pressures. Chem Eng Sci 58:2365-2376. (Pubitemid 36705066)
    • (2003) Chemical Engineering Science , vol.58 , Issue.11 , pp. 2365-2376
    • Maalej, S.1    Benadda, B.2    Otterbein, M.3
  • 23
    • 0030657464 scopus 로고    scopus 로고
    • 2 levels on batch and continuous cultures of Aspergillus niger A60: An evaluation of experimental methods
    • 2 levels on batch and continuous cultures of Aspergillus niger A60: An evaluation of experimental methods. Appl Environ Microbiol 63:4171-4177.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4171-4177
    • McIntyre, M.1    McNeil, B.2
  • 24
    • 0011391754 scopus 로고
    • Effect of carbon dioxide on growth of microorganisms in fed-bath cultures
    • Mori H, Kobayashi T, Shimizu S. 1983. Effect of carbon dioxide on growth of microorganisms in fed-bath cultures. J Ferment Technol 61:211-213.
    • (1983) J Ferment Technol , vol.61 , pp. 211-213
    • Mori, H.1    Kobayashi, T.2    Shimizu, S.3
  • 26
    • 0023102352 scopus 로고
    • Physiological constraints in increasing biomass concentration of Escherichia coli B in fed-batch culture
    • DOI 10.1007/BF01032744
    • Pan G, Rhee J, Lebeault J. 1987. Physiological constraints in increasing biomass concentration of Escherichia coli B in fed bath culture. Biotechnol Lett 9:89-94. (Pubitemid 17014107)
    • (1987) Biotechnology Letters , vol.9 , Issue.2 , pp. 89-94
    • Jae Gu, P.1    Joon Shick, R.2    Lebeault, J.M.3
  • 27
    • 1842582933 scopus 로고    scopus 로고
    • Transcription levels of key metabolic genes are the cause for different glucose utilization pathways in E. coli B (BL21) and E. coli K (JM109)
    • DOI 10.1016/j.jbiotec.2003.10.038, PII S0168165604000227
    • Phue JN, Shiloach J. 2004. Transcription level of key metabolic genes are the cause for different glucose utilization pathways in E. coli B (BL21) and E. coli K (JM109). J Biotechnol 109:21-30. (Pubitemid 38452568)
    • (2004) Journal of Biotechnology , vol.109 , Issue.1-2 , pp. 21-30
    • Phue, J.-N.1    Shiloach, J.2
  • 28
    • 19944421092 scopus 로고    scopus 로고
    • Glucose metabolism at high density growth of E. coli B and E. coli K: Differences in metabolic pathways are responsible for efficient glucose utilization in E. coli B as determined by microarrays and Northern blot analyses
    • DOI 10.1002/bit.20478
    • Phue JN, Noronha SB, Hattacharyya R, Wolfe AJ, Shiloach J. 2005. Glucose metabolism at high density growth of E. coli B and E. coli K: Differences in metabolic pathways are responsible for efficient glucose utilization in E. coli B as determined by microarrays and northern blot analyses. Biotechnol Bioeng 90:805-820. (Pubitemid 40756675)
    • (2005) Biotechnology and Bioengineering , vol.90 , Issue.7 , pp. 805-820
    • Phue, J.-N.1    Noronha, S.B.2    Hattacharyya, R.3    Wolfe, A.J.4    Shiloach, J.5
  • 29
    • 4444226939 scopus 로고    scopus 로고
    • Escherichia coli glutamate- And arginine-dependent acid resistance systems increase internal pH and reverse transmembrane potential
    • DOI 10.1128/JB.186.18.6032-6041.2004
    • Richard H, Foster JW. 2004. Escherichia coli glutamate- and arginina-dependent acid resistance systems increase internal pH and reverse transmembrane potential. J Bacteriol 186:6032-6041. (Pubitemid 39186991)
    • (2004) Journal of Bacteriology , vol.186 , Issue.18 , pp. 6032-6041
    • Richard, H.1    Foster, J.W.2
  • 30
    • 0035813543 scopus 로고    scopus 로고
    • 2 affects alginate production and prevents polymer degradation in cultures of Azotobacter vinelandii
    • 2 affects alginate production and prevents polymer degradation in cultures of Azotobacter vinelandii. Enzyme Microb Technol 29:535-540.
    • (2001) Enzyme Microb Technol , vol.29 , pp. 535-540
    • Seáñez, G.1    Peña, C.2    Galindo, E.3


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