메뉴 건너뛰기




Volumn 289, Issue 42, 2014, Pages 29148-29157

Allosteric inhibition of Epac: Computationalmodeling and experimental validationtoidentify allosteric sites and inhibitors

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; ENERGY TRANSFER; NUCLEOTIDES; PROTEINS;

EID: 84908073844     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M114.569319     Document Type: Article
Times cited : (23)

References (44)
  • 1
    • 0041836339 scopus 로고    scopus 로고
    • Epac: A new cAMP target and new avenues in cAMP research
    • Bos, J. L. (2003) Epac: a new cAMP target and new avenues in cAMP research. Nat. Rev. Mol. Cell Biol. 4, 733-738
    • (2003) Nat. Rev. Mol. Cell Biol. , vol.4 , pp. 733-738
    • Bos, J.L.1
  • 2
    • 84880939628 scopus 로고    scopus 로고
    • Exchange protein directly activated by cAMP (epac): A multidomain cAMP mediator in the regulation of diverse biological functions
    • Schmidt, M., Dekker, F. J., and Maarsingh, H. (2013) Exchange protein directly activated by cAMP (epac): a multidomain cAMP mediator in the regulation of diverse biological functions. Pharmacol. Rev. 65, 670-709
    • (2013) Pharmacol. Rev. , vol.65 , pp. 670-709
    • Schmidt, M.1    Dekker, F.J.2    Maarsingh, H.3
  • 8
    • 49649116643 scopus 로고    scopus 로고
    • The cAMP/Epac1/Rap1 pathway in pancreatic carcinoma
    • Lorenz, R., Aleksic, T., Wagner, M., Adler, G., and Weber, C. K. (2008) The cAMP/Epac1/Rap1 pathway in pancreatic carcinoma. Pancreas 37, 102-103
    • (2008) Pancreas , vol.37 , pp. 102-103
    • Lorenz, R.1    Aleksic, T.2    Wagner, M.3    Adler, G.4    Weber, C.K.5
  • 9
    • 0037135592 scopus 로고    scopus 로고
    • Cell cycle-dependent subcellular localization of exchange factor directly activated by cAMP
    • Qiao, J., Mei, F. C., Popov, V. L., Vergara, L. A., and Cheng, X. (2002) Cell cycle-dependent subcellular localization of exchange factor directly activated by cAMP. J. Biol. Chem. 277, 26581-26586
    • (2002) J. Biol. Chem. , vol.277 , pp. 26581-26586
    • Qiao, J.1    Mei, F.C.2    Popov, V.L.3    Vergara, L.A.4    Cheng, X.5
  • 10
    • 84857947890 scopus 로고    scopus 로고
    • Camp regulates DEP domain-mediated binding of the guanine nucleotide exchange factor Epac1 to phosphatidic acid at the plasma membrane
    • Consonni, S. V., Gloerich, M., Spanjaard, E., and Bos, J. L. (2012) cAMP regulates DEP domain-mediated binding of the guanine nucleotide exchange factor Epac1 to phosphatidic acid at the plasma membrane. Proc. Natl. Acad. Sci. U. S. A. 109, 3814-3819
    • (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. 3814-3819
    • Consonni, S.V.1    Gloerich, M.2    Spanjaard, E.3    Bos, J.L.4
  • 14
    • 50349092827 scopus 로고    scopus 로고
    • Entropy-driven cAMP-dependent allosteric control of inhibitory interactions in exchange proteins directly activated by cAMP
    • Das, R., Mazhab-Jafari, M. T., Chowdhury, S., SilDas, S., Selvaratnam, R., and Melacini, G. (2008) Entropy-driven cAMP-dependent allosteric control of inhibitory interactions in exchange proteins directly activated by cAMP. J. Biol. Chem. 283, 19691-19703
    • (2008) J. Biol. Chem. , vol.283 , pp. 19691-19703
    • Das, R.1    Mazhab-Jafari, M.T.2    Chowdhury, S.3    SilDas, S.4    Selvaratnam, R.5    Melacini, G.6
  • 16
    • 84896928348 scopus 로고    scopus 로고
    • Identification and validation of modulators of Epac activity: Structurefunction implications for Epac activation and inhibition
    • Brown, L. M., Rogers, K. E., McCammon, J. A., and Insel, P. A. (2014) Identification and validation of modulators of Epac activity: structurefunction implications for Epac activation and inhibition. J. Biol. Chem. 289, 8217-8230
    • (2014) J. Biol. Chem. , vol.289 , pp. 8217-8230
    • Brown, L.M.1    Rogers, K.E.2    McCammon, J.A.3    Insel, P.A.4
  • 18
    • 12244296453 scopus 로고    scopus 로고
    • Inhibition of cardiac myofibroblast formation and collagen synthesis by activation and overexpression of adenylyl cyclase
    • Swaney, J. S., Roth, D. M., Olson, E. R., Naugle, J. E., Meszaros, J. G., and Insel, P. A. (2005) Inhibition of cardiac myofibroblast formation and collagen synthesis by activation and overexpression of adenylyl cyclase. Proc. Natl. Acad. Sci. U. S. A. 102, 437-442
    • (2005) Proc. Natl. Acad. Sci. U. S. A. , vol.102 , pp. 437-442
    • Swaney, J.S.1    Roth, D.M.2    Olson, E.R.3    Naugle, J.E.4    Meszaros, J.G.5    Insel, P.A.6
  • 19
    • 80052538732 scopus 로고    scopus 로고
    • Cyclic AMP control measured in two compartments in HEK293 cells: Phosphodiesterase K (M) is more important than phosphodiesterase localization
    • Matthiesen, K., and Nielsen, J. (2011) Cyclic AMP control measured in two compartments in HEK293 cells: phosphodiesterase K (M) is more important than phosphodiesterase localization. PloS One 6, e24392
    • (2011) PloS One , vol.6 , pp. e24392
    • Matthiesen, K.1    Nielsen, J.2
  • 20
    • 0031014969 scopus 로고    scopus 로고
    • Rapid Ca2+-mediated activation of Rap1 in human platelets
    • Franke, B., Akkerman, J. W., and Bos, J. L. (1997) Rapid Ca2+-mediated activation of Rap1 in human platelets. EMBOJ. 16, 252-259
    • (1997) EMBOJ. , vol.16 , pp. 252-259
    • Franke, B.1    Akkerman, J.W.2    Bos, J.L.3
  • 21
    • 69949141505 scopus 로고    scopus 로고
    • Mechanism of Epac activation: Structural and functional analyses of Epac2 hinge mutants with constitutive and reduced activities
    • Tsalkova, T., Blumenthal, D. K., Mei, F. C, White, M. A., and Cheng, X. (2009) Mechanism of Epac activation: structural and functional analyses of Epac2 hinge mutants with constitutive and reduced activities. J. Biol. Chem. 284, 23644-23651
    • (2009) J. Biol. Chem. , vol.284 , pp. 23644-23651
    • Tsalkova, T.1    Blumenthal, D.K.2    Mei, F.C.3    White, M.A.4    Cheng, X.5
  • 22
    • 61449104961 scopus 로고    scopus 로고
    • Fragment-based identification of druggable "hot spots" of proteins using Fourier domain correlation techniques
    • Brenke, R., Kozakov, D., Chuang, G. Y., Beglov, D., Hall, D., Landon, M. R., Mattos, C, and Vajda, S. (2009) Fragment-based identification of druggable "hot spots" of proteins using Fourier domain correlation techniques. Bioinformatics 25, 621-627
    • (2009) Bioinformatics , vol.25 , pp. 621-627
    • Brenke, R.1    Kozakov, D.2    Chuang, G.Y.3    Beglov, D.4    Hall, D.5    Landon, M.R.6    Mattos, C.7    Vajda, S.8
  • 25
    • 77954065271 scopus 로고    scopus 로고
    • I-TASSER: A unified platform for automated protein structure and function prediction
    • Roy, A., Kucukural, A., and Zhang, Y. (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat. Protoc. 5, 725-738
    • (2010) Nat. Protoc. , vol.5 , pp. 725-738
    • Roy, A.1    Kucukural, A.2    Zhang, Y.3
  • 26
    • 39449115394 scopus 로고    scopus 로고
    • I-TASSER server for protein 3D structure prediction
    • Zhang, Y. (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9, 40
    • (2008) BMC Bioinformatics , vol.9 , pp. 40
    • Zhang, Y.1
  • 29
    • 84952104504 scopus 로고
    • An analysis of the accuracy of Langevin and molecular dynamics algorithms
    • Pastor, R. W., Brooks, B. R., and Szabo, A. (1988) An analysis of the accuracy of Langevin and molecular dynamics algorithms. Mol. Phys. 65, 1409-1419
    • (1988) Mol. Phys. , vol.65 , pp. 1409-1419
    • Pastor, R.W.1    Brooks, B.R.2    Szabo, A.3
  • 32
    • 3242886771 scopus 로고    scopus 로고
    • PDB2PQR: An automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
    • Dolinsky, T. J., Nielsen, J. E., McCammon, J. A., and Baker, N. A. (2004) PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res. 32, W665-667
    • (2004) Nucleic Acids Res. , vol.32 , pp. W665-W667
    • Dolinsky, T.J.1    Nielsen, J.E.2    McCammon, J.A.3    Baker, N.A.4
  • 33
    • 34547559704 scopus 로고    scopus 로고
    • PDB2PQR: Expanding and upgrading automated preparation of biomolecular structures for molecular simulations
    • Dolinsky, T. J., Czodrowski, P., Li, H., Nielsen, J. E., Jensen, J. H., Klebe, G., and Baker, N. A. (2007) PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res. 35, W522-525
    • (2007) Nucleic Acids Res. , vol.35 , pp. W522-W525
    • Dolinsky, T.J.1    Czodrowski, P.2    Li, H.3    Nielsen, J.E.4    Jensen, J.H.5    Klebe, G.6    Baker, N.A.7
  • 34
    • 84908076051 scopus 로고    scopus 로고
    • Schrödinger Release 2014-1
    • New York, NY
    • Schrödinger, LLC (2014) Schrödinger Release 2014-1, Maestro, New York, NY
    • (2014) Maestro
    • Schrödinger, LLC,1
  • 35
    • 0033003760 scopus 로고    scopus 로고
    • A simple statistical parameter for use in evaluation and validation of high throughput screening assays
    • Zhang, J. H., Chung, T. D., and Oldenburg, K. R. (1999) A simple statistical parameter for use in evaluation and validation of high throughput screening assays. J. Biomol. Screen. 4, 67-73
    • (1999) J. Biomol. Screen. , vol.4 , pp. 67-73
    • Zhang, J.H.1    Chung, T.D.2    Oldenburg, K.R.3
  • 36
    • 0037157153 scopus 로고    scopus 로고
    • Computational drug design accommodating receptor flexibility: The relaxed complex scheme
    • Lin, J. H., Perryman, A. L., Schames, J. R., and McCammon, J. A. (2002) Computational drug design accommodating receptor flexibility: the relaxed complex scheme. J. Am. Chem. Soc. 124, 5632-5633
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 5632-5633
    • Lin, J.H.1    Perryman, A.L.2    Schames, J.R.3    McCammon, J.A.4
  • 37
    • 84855916444 scopus 로고    scopus 로고
    • On the use of molecular dynamics receptor conformations for virtual screening
    • Nichols, S. E., Baron, R., and McCammon, J. A. (2012) On the use of molecular dynamics receptor conformations for virtual screening. Methods Mol. Biol. 819, 93-103
    • (2012) Methods Mol. Biol. , vol.819 , pp. 93-103
    • Nichols, S.E.1    Baron, R.2    McCammon, J.A.3
  • 38
    • 0141532168 scopus 로고    scopus 로고
    • Ligand-mediated activation of the cAMP-responsive guanine nucleotide exchange factor Epac
    • Rehmann, H., Schwede, F., Døskeland, S. O., Wittinghofer, A., and Bos, J. L. (2003) Ligand-mediated activation of the cAMP-responsive guanine nucleotide exchange factor Epac. J. Biol. Chem. 278, 38548-38556
    • (2003) J. Biol. Chem. , vol.278 , pp. 38548-38556
    • Rehmann, H.1    Schwede, F.2    Døskeland, S.O.3    Wittinghofer, A.4    Bos, J.L.5
  • 41
    • 0025216650 scopus 로고
    • Differential effects of the various isoforms of platelet-derived growth factor on chemotaxis of fibroblasts, monocytes, and granulocytes
    • Siegbahn, A., Hammacher, A., Westermark, B., and Heldin, C. H. (1990) Differential effects of the various isoforms of platelet-derived growth factor on chemotaxis of fibroblasts, monocytes, and granulocytes. J. Clin. Invest. 85, 916-920
    • (1990) J. Clin. Invest. , vol.85 , pp. 916-920
    • Siegbahn, A.1    Hammacher, A.2    Westermark, B.3    Heldin, C.H.4
  • 43
    • 44449172648 scopus 로고    scopus 로고
    • Sequential activation of Rap1 and Rac1 small G proteins by PDGF locally at leading edges of NIH3T3 cells
    • Takahashi, M., Rikitake, Y., Nagamatsu, Y., Hara, T., Ikeda, W., Hirata, K., and Takai, Y. (2008) Sequential activation of Rap1 and Rac1 small G proteins by PDGF locally at leading edges of NIH3T3 cells. Genes Cells 13, 549-569
    • (2008) Genes Cells , vol.13 , pp. 549-569
    • Takahashi, M.1    Rikitake, Y.2    Nagamatsu, Y.3    Hara, T.4    Ikeda, W.5    Hirata, K.6    Takai, Y.7
  • 44
    • 78649487698 scopus 로고    scopus 로고
    • Ras superfamily GEFs and GAPs: Validated and tractable targets for cancer therapy?
    • Vigil, D., Cherfils, J., Rossman, K. L., and Der, C. J. (2010) Ras superfamily GEFs and GAPs: validated and tractable targets for cancer therapy? Nat. Rev. Cancer 10, 842-857
    • (2010) Nat. Rev. Cancer , vol.10 , pp. 842-857
    • Vigil, D.1    Cherfils, J.2    Rossman, K.L.3    Der, C.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.