-
1
-
-
14844340954
-
Initiation of protein synthesis in bacteria
-
Laursen, B. S., Sørensen, H. P., Mortensen, K. K., and Sperling-Petersen, H. U. (2005) Initiation of protein synthesis in bacteria. Microbiol. Mol. Biol. Rev. 69, 101-123
-
(2005)
Microbiol. Mol. Biol. Rev
, vol.69
, pp. 101-123
-
-
Laursen, B.S.1
Sørensen, H.P.2
Mortensen, K.K.3
Sperling-Petersen, H.U.4
-
2
-
-
0036786891
-
Correlations between shine- dalgarno sequences and gene features such as predicted expression levels and operon structures
-
Ma, J., Campbell, A., and Karlin, S. (2002) Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures. J. Bacteriol. 184, 5733-5745
-
(2002)
J. Bacteriol
, vol.184
, pp. 5733-5745
-
-
Ma, J.1
Campbell, A.2
Karlin, S.3
-
3
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
Salis, H. M., Mirsky, E. A., and Voigt, C. A. (2009) Automated design of synthetic ribosome binding sites to control protein expression. Nat. Biotechnol. 27, 946-950
-
(2009)
Nat. Biotechnol
, vol.27
, pp. 946-950
-
-
Salis, H.M.1
Mirsky, E.A.2
Voigt, C.A.3
-
4
-
-
0028584414
-
Determination of the optimal aligned spacing between the shine-dalgarno sequence and the translation initiation codon of escherichia coli mrnas
-
Chen, H., Bjerknes, M., Kumar, R., and Jay, E. (1994) Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs. Nucleic Acids Res. 22, 4953-4957
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4953-4957
-
-
Chen, H.1
Bjerknes, M.2
Kumar, R.3
Jay, E.4
-
5
-
-
2642566651
-
Enhancement of translation initiation by a/t-rich sequences downstream of the initiation codon in. Escherichia coli
-
Qing, G., Xia, B., and Inouye, M. (2003) Enhancement of translation initiation by A/T-rich sequences downstream of the initiation codon in. Escherichia coli. J. Mol. Microbiol. Biotechnol. 6, 133-144
-
(2003)
J. Mol. Microbiol. Biotechnol
, vol.6
, pp. 133-144
-
-
Qing, G.1
Xia, B.2
Inouye, M.3
-
6
-
-
84883672820
-
Translation enhancer improves the ribosome liberation from translation initiation
-
Takahashi, S., Furusawa, H., Ueda, T., and Okahata, Y. (2013) Translation enhancer improves the ribosome liberation from translation initiation. J. Am. Chem. Soc. 135, 13096-13106
-
(2013)
J. Am. Chem. Soc
, vol.135
, pp. 13096-13106
-
-
Takahashi, S.1
Furusawa, H.2
Ueda, T.3
Okahata, Y.4
-
7
-
-
37849046403
-
Translation initiation region sequence preferences in escherichia coli
-
Vimberg, V., Tats, A., Remm, M., and Tenson, T. (2007) Translation initiation region sequence preferences in Escherichia coli. BMC Mol. Biol. 8, 100
-
(2007)
BMC Mol. Biol
, vol.8
, pp. 100
-
-
Vimberg, V.1
Tats, A.2
Remm, M.3
Tenson, T.4
-
8
-
-
77951722801
-
How the sequence of a gene can tune its translation
-
Fredrick, K., and Ibba, M. (2010) How the sequence of a gene can tune its translation. Cell 141, 227-229
-
(2010)
Cell
, vol.141
, pp. 227-229
-
-
Fredrick, K.1
Ibba, M.2
-
9
-
-
78650304100
-
Synonymous but not the same: The causes and consequences of codon bias
-
Plotkin, J. B., and Kudla, G. (2011) Synonymous but not the same: the causes and consequences of codon bias. Nat. Rev. Genet. 12, 32-42
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 32-42
-
-
Plotkin, J.B.1
Kudla, G.2
-
10
-
-
34548446795
-
Halting a cellular production line: Responses to ribosomal pausing during translation
-
Buchan, J. R., and Stansfield, I. (2007) Halting a cellular production line: responses to ribosomal pausing during translation. Biol. Cell 99, 475-487
-
(2007)
Biol. Cell
, vol.99
, pp. 475-487
-
-
Buchan, J.R.1
Stansfield, I.2
-
11
-
-
0038179369
-
Selective charging of trna isoacceptors explains patterns of codon usage
-
Elf, J., Nilsson, D., Tenson, T., and Ehrenberg, M. (2003) Selective charging of tRNA isoacceptors explains patterns of codon usage. Science 300, 1718-1722
-
(2003)
Science
, vol.300
, pp. 1718-1722
-
-
Elf, J.1
Nilsson, D.2
Tenson, T.3
Ehrenberg, M.4
-
12
-
-
84867732569
-
Speeding with control: Codon usage, trnas, and ribosomes
-
Novoa, E. M., and Ribas de Pouplana, L. (2012) Speeding with control: codon usage, tRNAs, and ribosomes. Trends Genet. 28, 574-581
-
(2012)
Trends Genet
, vol.28
, pp. 574-581
-
-
Novoa, E.M.1
Ribas De Pouplana, L.2
-
13
-
-
77951734603
-
A role for codon order in translation dynamics
-
Cannarozzi, G., Schraudolph, N. N., Faty, M., von Rohr, P., Friberg, M. T., Roth, A. C., Gonnet, P., Gonnet, G., and Barral, Y. (2010) A role for codon order in translation dynamics. Cell 141, 355-367
-
(2010)
Cell
, vol.141
, pp. 355-367
-
-
Cannarozzi, G.1
Schraudolph, N.N.2
Faty, M.3
Von Rohr, P.4
Friberg, M.T.5
Roth, A.C.6
Gonnet, P.7
Gonnet, G.8
Barral, Y.9
-
14
-
-
84873510362
-
Ribosome traffic on mrnas maps to gene ontology: Genome-wide quantification of translation initiation rates and polysome size regulation
-
Ciandrini, L., Stansfield, I., and Romano, M. C. (2013) Ribosome traffic on mRNAs maps to gene ontology: genome-wide quantification of translation initiation rates and polysome size regulation. PLoS Comput. Biol. 9, e1002866
-
(2013)
PLoS Comput. Biol
, vol.9
-
-
Ciandrini, L.1
Stansfield, I.2
Romano, M.C.3
-
15
-
-
84894646451
-
Translation elongation can control translation initiation on eukaryotic mrnas
-
Chu, D., Kazana, E., Bellanger, N., Singh, T., Tuite, M. F., and von der Haar, T. (2014) Translation elongation can control translation initiation on eukaryotic mRNAs. EMBO J. 33, 21-34
-
(2014)
EMBO J
, vol.33
, pp. 21-34
-
-
Chu, D.1
Kazana, E.2
Bellanger, N.3
Singh, T.4
Tuite, M.F.5
Von Der Haar, T.6
-
16
-
-
64849114915
-
Codingsequence determinants of gene expression in escherichia coli
-
Kudla, G., Murray, A. W., Tollervey, D., and Plotkin, J. B. (2009) Codingsequence determinants of gene expression in Escherichia coli. Science 324, 255-258
-
(2009)
Science
, vol.324
, pp. 255-258
-
-
Kudla, G.1
Murray, A.W.2
Tollervey, D.3
Plotkin, J.B.4
-
17
-
-
84886302057
-
Causes and effects of n-terminal codon bias in bacterial genes
-
Goodman, D. B., Church, G. M., and Kosuri, S. (2013) Causes and effects of N-terminal codon bias in bacterial genes. Science 342, 475-479
-
(2013)
Science
, vol.342
, pp. 475-479
-
-
Goodman, D.B.1
Church, G.M.2
Kosuri, S.3
-
18
-
-
0035105116
-
Secretion monitor, secm, undergoes self-translation arrest in the cytosol
-
Nakatogawa, H., and Ito, K. (2001) Secretion monitor, SecM, undergoes self-translation arrest in the cytosol. Mol. Cell 7, 185-192
-
(2001)
Mol. Cell
, vol.7
, pp. 185-192
-
-
Nakatogawa, H.1
Ito, K.2
-
19
-
-
79960199054
-
The translational regulatory function of secm requires the precise timing of membrane targeting
-
Yap, M. N., and Bernstein, H. D. (2011) The translational regulatory function of SecM requires the precise timing of membrane targeting. Mol. Microbiol. 81, 540-553
-
(2011)
Mol. Microbiol
, vol.81
, pp. 540-553
-
-
Yap, M.N.1
Bernstein, H.D.2
-
20
-
-
0037040411
-
The ribosomal exit tunnel functions as a discriminating gate
-
Nakatogawa, H., and Ito, K. (2002) The ribosomal exit tunnel functions as a discriminating gate. Cell 108, 629-636
-
(2002)
Cell
, vol.108
, pp. 629-636
-
-
Nakatogawa, H.1
Ito, K.2
-
21
-
-
79953106751
-
The ribosomal tunnel as a functional environment for nascent polypeptide folding and translational stalling
-
Wilson, D. N., and Beckmann, R. (2011) The ribosomal tunnel as a functional environment for nascent polypeptide folding and translational stalling. Curr. Opin. Struct. Biol. 21, 274-282
-
(2011)
Curr. Opin. Struct. Biol
, vol.21
, pp. 274-282
-
-
Wilson, D.N.1
Beckmann, R.2
-
22
-
-
71749109816
-
Genetic identification of nascent peptides that induce ribosome stalling
-
Tanner, D. R., Cariello, D. A., Woolstenhulme, C. J., Broadbent, M. A., and Buskirk, A. R. (2009) Genetic identification of nascent peptides that induce ribosome stalling. J. Biol. Chem. 284, 34809-34818
-
(2009)
J. Biol. Chem
, vol.284
, pp. 34809-34818
-
-
Tanner, D.R.1
Cariello, D.A.2
Woolstenhulme, C.J.3
Broadbent, M.A.4
Buskirk, A.R.5
-
23
-
-
77249145819
-
Divergent stalling sequences sense and control cellular physiology
-
Ito, K., Chiba, S., and Pogliano, K. (2010) Divergent stalling sequences sense and control cellular physiology. Biochem. Biophys. Res. Commun. 393, 1-5
-
(2010)
Biochem. Biophys. Res. Commun
, vol.393
, pp. 1-5
-
-
Ito, K.1
Chiba, S.2
Pogliano, K.3
-
24
-
-
84880736920
-
The task force that rescues stalled ribosomes in bacteria
-
Giudice, E., and Gillet, R. (2013) The task force that rescues stalled ribosomes in bacteria. Trends Biochem. Sci. 38, 403-411
-
(2013)
Trends Biochem. Sci
, vol.38
, pp. 403-411
-
-
Giudice, E.1
Gillet, R.2
-
25
-
-
58549114677
-
Slow peptide bond formation by proline and other n-alkylamino acids in translation
-
Pavlov, M. Y., Watts, R. E., Tan, Z., Cornish, V. W., Ehrenberg, M., and Forster, A. C. (2009) Slow peptide bond formation by proline and other N-alkylamino acids in translation. Proc. Natl. Acad. Sci. U.S.A. 106, 50-54
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 50-54
-
-
Pavlov, M.Y.1
Watts, R.E.2
Tan, Z.3
Cornish, V.W.4
Ehrenberg, M.5
Forster, A.C.6
-
26
-
-
84871918588
-
Translation elongation factor ef-p alleviates ribosome stalling at polyproline stretches
-
Ude, S., Lassak, J., Starosta, A. L., Kraxenberger, T., Wilson, D. N., and Jung, K. (2013) Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches. Science 339, 82-85
-
(2013)
Science
, vol.339
, pp. 82-85
-
-
Ude, S.1
Lassak, J.2
Starosta, A.L.3
Kraxenberger, T.4
Wilson, D.N.5
Jung, K.6
-
27
-
-
84871921644
-
EF-p is essential for rapid synthesis of proteins containing consecutive proline residues
-
Doerfel, L. K., Wohlgemuth, I., Kothe, C., Peske, F., Urlaub, H., and Rodnina, M. V. (2013) EF-P Is essential for rapid synthesis of proteins containing consecutive proline residues. Science 339, 85-88
-
(2013)
Science
, vol.339
, pp. 85-88
-
-
Doerfel, L.K.1
Wohlgemuth, I.2
Kothe, C.3
Peske, F.4
Urlaub, H.5
Rodnina, M.V.6
-
28
-
-
84891707361
-
EIF5A promotes translation of polyproline motifs
-
Gutierrez, E., Shin, B. S., Woolstenhulme, C. J., Kim, J. R., Saini, P., Buskirk, A. R., and Dever, T. E. (2013) eIF5A promotes translation of polyproline motifs. Mol. Cell. 51, 35-45
-
(2013)
Mol. Cell
, vol.51
, pp. 35-45
-
-
Gutierrez, E.1
Shin, B.S.2
Woolstenhulme, C.J.3
Kim, J.R.4
Saini, P.5
Buskirk, A.R.6
Dever, T.E.7
-
29
-
-
84880064840
-
Divergent protein motifs direct elongation factor p-mediated translational regulation in salmonella enterica and escherichia coli
-
Hersch, S. J., Wang, M., Zou, S. B., Moon, K. M., Foster, L. J., Ibba, M., and Navarre, W. W. (2013) Divergent protein motifs direct elongation factor P-mediated translational regulation in Salmonella enterica and Escherichia coli. mBio. 4, e00180-13
-
(2013)
MBio
, vol.4
-
-
Hersch, S.J.1
Wang, M.2
Zou, S.B.3
Moon, K.M.4
Foster, L.J.5
Ibba, M.6
Navarre, W.W.7
-
30
-
-
84884335094
-
Distinct xppx sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor ef-p
-
Peil, L., Starosta, A. L., Lassak, J., Atkinson, G. C., Virumäe, K., Spitzer, M., Tenson, T., Jung, K., Remme, J., and Wilson, D. N. (2013) Distinct XPPX sequence motifs induce ribosome stalling, which is rescued by the translation elongation factor EF-P. Proc. Natl. Acad. Sci. U.S.A. 110, 15265-15270
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 15265-15270
-
-
Peil, L.1
Starosta, A.L.2
Lassak, J.3
Atkinson, G.C.4
Virumäe, K.5
Spitzer, M.6
Tenson, T.7
Jung, K.8
Remme, J.9
Wilson, D.N.10
-
31
-
-
3042714226
-
Crystal structure of elongation factor p from thermus thermophilus hb8
-
Hanawa-Suetsugu, K., Sekine, S., Sakai, H., Hori-Takemoto, C., Terada, T., Unzai, S., Tame, J. R., Kuramitsu, S., Shirouzu, M., and Yokoyama, S. (2004) Crystal structure of elongation factor P from Thermus thermophilus HB8. Proc. Natl. Acad. Sci. U.S.A. 101, 9595-9600
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 9595-9600
-
-
Hanawa-Suetsugu, K.1
Sekine, S.2
Sakai, H.3
Hori-Takemoto, C.4
Terada, T.5
Unzai, S.6
Tame, J.R.7
Kuramitsu, S.8
Shirouzu, M.9
Yokoyama, S.10
-
32
-
-
79954608920
-
Crystal structure of elongation factor p from pseudomonas aeruginosa at 1.75 å resolution
-
Choi, S., and Choe, J. (2011) Crystal structure of elongation factor P from Pseudomonas aeruginosa at 1.75 Å resolution. Proteins 79, 1688-1693
-
(2011)
Proteins
, vol.79
, pp. 1688-1693
-
-
Choi, S.1
Choe, J.2
-
33
-
-
85011940605
-
Elongation factor p mediates a novel post-transcriptional regulatory pathway critical for bacterial virulence
-
Zou, S. B., Roy, H., Ibba, M., and Navarre, W. W. (2011) Elongation factor P mediates a novel post-transcriptional regulatory pathway critical for bacterial virulence. Virulence 2, 147-151
-
(2011)
Virulence
, vol.2
, pp. 147-151
-
-
Zou, S.B.1
Roy, H.2
Ibba, M.3
Navarre, W.W.4
-
34
-
-
80052963243
-
The trna synthetase paralog poxa modifies elongation factor-p with (r)-β-lysine
-
Roy, H., Zou, S. B., Bullwinkle, T. J., Wolfe, B. S., Gilreath, M. S., Forsyth, C. J., Navarre, W. W., and Ibba, M. (2011) The tRNA synthetase paralog PoxA modifies elongation factor-P with (R)-β-lysine. Nat. Chem. Biol. 7, 667-669
-
(2011)
Nat. Chem. Biol
, vol.7
, pp. 667-669
-
-
Roy, H.1
Zou, S.B.2
Bullwinkle, T.J.3
Wolfe, B.S.4
Gilreath, M.S.5
Forsyth, C.J.6
Navarre, W.W.7
Ibba, M.8
-
35
-
-
84864283412
-
Lys34 of translation elongation factor ef-p is hydroxylated by yfcm
-
Peil, L., Starosta, A. L., Virumäe, K., Atkinson, G. C., Tenson, T., Remme, J., and Wilson, D. N. (2012) Lys34 of translation elongation factor EF-P is hydroxylated by YfcM. Nat. Chem. Biol. 8, 695-697
-
(2012)
Nat. Chem. Biol
, vol.8
, pp. 695-697
-
-
Peil, L.1
Starosta, A.L.2
Virumäe, K.3
Atkinson, G.C.4
Tenson, T.5
Remme, J.6
Wilson, D.N.7
-
36
-
-
84873636344
-
(R)-β- lysine-modified elongation factor p functions in translation elongation
-
Bullwinkle, T. J., Zou, S. B., Rajkovic, A., Hersch, S. J., Elgamal, S., Robinson, N., Smil, D., Bolshan, Y., Navarre, W. W., and Ibba, M. (2013) (R)-β- Lysine-modified elongation factor P functions in translation elongation. J. Biol. Chem. 288, 4416-4423
-
(2013)
J. Biol. Chem
, vol.288
, pp. 4416-4423
-
-
Bullwinkle, T.J.1
Zou, S.B.2
Rajkovic, A.3
Hersch, S.J.4
Elgamal, S.5
Robinson, N.6
Smil, D.7
Bolshan, Y.8
Navarre, W.W.9
Ibba, M.10
-
37
-
-
77955474903
-
PoxA, yjek, and elongation factor p coordinately modulate virulence and drug resistance in salmonella enterica
-
Navarre, W. W., Zou, S. B., Roy, H., Xie, J. L., Savchenko, A., Singer, A., Edvokimova, E., Prost, L. R., Kumar, R., Ibba, M., and Fang, F. C. (2010) PoxA, YjeK, and elongation factor P coordinately modulate virulence and drug resistance in Salmonella enterica. Mol. Cell. 39, 209-221
-
(2010)
Mol. Cell
, vol.39
, pp. 209-221
-
-
Navarre, W.W.1
Zou, S.B.2
Roy, H.3
Xie, J.L.4
Savchenko, A.5
Singer, A.6
Edvokimova, E.7
Prost, L.R.8
Kumar, R.9
Ibba, M.10
Fang, F.C.11
-
38
-
-
84866315865
-
Loss of elongation factor p disrupts bacterial outer membrane integrity
-
Zou, S. B., Hersch, S. J., Roy, H., Wiggers, J. B., Leung, A. S., Buranyi, S., Xie, J. L., Dare, K., Ibba, M., and Navarre, W. W. (2012) Loss of elongation factor P disrupts bacterial outer membrane integrity. J. Bacteriol. 194, 413-425
-
(2012)
J. Bacteriol
, vol.194
, pp. 413-425
-
-
Zou, S.B.1
Hersch, S.J.2
Roy, H.3
Wiggers, J.B.4
Leung, A.S.5
Buranyi, S.6
Xie, J.L.7
Dare, K.8
Ibba, M.9
Navarre, W.W.10
-
39
-
-
0025338413
-
The proton-translocating atpase of escherichia coli
-
Senior, A. E. (1990) The proton-translocating ATPase of Escherichia coli. Annu. Rev. Biophys. Biophys. Chem. 19, 7-41
-
(1990)
Annu. Rev. Biophys. Biophys. Chem
, vol.19
, pp. 7-41
-
-
Senior, A.E.1
-
40
-
-
48249108462
-
Unique rotary atp synthase and its biological diversity
-
von Ballmoos, C., Cook, G. M., and Dimroth, P. (2008) Unique rotary ATP synthase and its biological diversity. Annu. Rev. Biophys. 37, 43-64
-
(2008)
Annu. Rev. Biophys
, vol.37
, pp. 43-64
-
-
Von Ballmoos, C.1
Cook, G.M.2
Dimroth, P.3
-
41
-
-
84907840352
-
EF-p dependent pauses integrate proximal and distal signals during translation
-
Elgamal, S., Katz, A., Hersch, S. J., Newsom, D., White, P., Navarre, W. W., and Ibba, M. (2014) EF-P dependent pauses integrate proximal and distal signals during translation. PLoS Genet. 10, e1004553
-
(2014)
PLoS Genet
, vol.10
-
-
Elgamal, S.1
Katz, A.2
Hersch, S.J.3
Newsom, D.4
White, P.5
Navarre, W.W.6
Ibba, M.7
-
42
-
-
84859988230
-
Superfolder gfp reporters validate diverse new mrna targets of the classic porin regulator, micf rna
-
Corcoran, C. P., Podkaminski, D., Papenfort, K., Urban, J. H., Hinton, J. C., and Vogel, J. (2012) Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA. Mol. Microbiol. 84, 428-445
-
(2012)
Mol. Microbiol
, vol.84
, pp. 428-445
-
-
Corcoran, C.P.1
Podkaminski, D.2
Papenfort, K.3
Urban, J.H.4
Hinton, J.C.5
Vogel, J.6
-
43
-
-
65649152564
-
A green fluorescent protein (gfp)-based plasmid system to study post-transcriptional control of gene expression in vivo
-
Urban, J. H., and Vogel, J. (2009) A green fluorescent protein (GFP)-based plasmid system to study post-transcriptional control of gene expression in vivo. Methods Mol. Biol. 540, 301-319
-
(2009)
Methods Mol. Biol
, vol.540
, pp. 301-319
-
-
Urban, J.H.1
Vogel, J.2
-
44
-
-
30544433196
-
Engineering and characterization of a superfolder green fluorescent protein
-
Pédelacq, J. D., Cabantous, S., Tran, T., Terwilliger, T. C., and Waldo, G. S. (2006) Engineering and characterization of a superfolder green fluorescent protein. Nat. Biotechnol. 24, 79-88
-
(2006)
Nat. Biotechnol
, vol.24
, pp. 79-88
-
-
Pédelacq, J.D.1
Cabantous, S.2
Tran, T.3
Terwilliger, T.C.4
Waldo, G.S.5
-
45
-
-
67349270900
-
Enzymatic assembly of dna molecules up to several hundred kilobases
-
Gibson, D. G., Young, L., Chuang, R. Y., Venter, J. C., Hutchison, C. A., 3rd, and Smith, H. O. (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6, 343-345
-
(2009)
Nat. Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
-
46
-
-
31544450286
-
Construction of escherichia coli k-12 in-frame, single-gene knockout mutants: The keio collection
-
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K. A., Tomita, M., Wanner, B. L., and Mori, H. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2, 2006.0008
-
(2006)
Mol. Syst. Biol
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
47
-
-
0034612342
-
One-step inactivation of chromosomal genes in escherichia coli k-12 using pcr products
-
Datsenko, K. A., and Wanner, B. L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U.S.A. 97, 6640-6645
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
48
-
-
0029745401
-
Escherichia coli translation initiation factor 3 discriminates the initiation codon in vivo
-
Sussman, J. K., Simons, E. L., and Simons, R. W. (1996) Escherichia coli translation initiation factor 3 discriminates the initiation codon in vivo. Mol. Microbiol. 21, 347-360
-
(1996)
Mol. Microbiol
, vol.21
, pp. 347-360
-
-
Sussman, J.K.1
Simons, E.L.2
Simons, R.W.3
-
49
-
-
33745628037
-
The geometry of the ribosomal polypeptide exit tunnel
-
Voss, N. R., Gerstein, M., Steitz, T. A., and Moore, P. B. (2006) The geometry of the ribosomal polypeptide exit tunnel. J. Mol. Biol. 360, 893-906
-
(2006)
J. Mol. Biol
, vol.360
, pp. 893-906
-
-
Voss, N.R.1
Gerstein, M.2
Steitz, T.A.3
Moore, P.B.4
-
50
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
Lu, P., Vogel, C., Wang, R., Yao, X., and Marcotte, E. M. (2007) Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat. Biotechnol. 25, 117-124
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
-
51
-
-
84879345901
-
Ratelimiting steps in yeast protein translation
-
Shah, P., Ding, Y., Niemczyk, M., Kudla, G., and Plotkin, J. (2013) Ratelimiting steps in yeast protein translation. Cell 153, 1589-1601
-
(2013)
Cell
, vol.153
, pp. 1589-1601
-
-
Shah, P.1
Ding, Y.2
Niemczyk, M.3
Kudla, G.4
Plotkin, J.5
-
52
-
-
0028907431
-
Consecutive low-usage leucine codons block translation only when near the 5' end of a message in. Escherichia coli
-
Goldman, E., Rosenberg, A. H., Zubay, G., and Studier, F. W. (1995) Consecutive low-usage leucine codons block translation only when near the 5' end of a message in. Escherichia coli. J. Mol. Biol. 245, 467-473
-
(1995)
J. Mol. Biol
, vol.245
, pp. 467-473
-
-
Goldman, E.1
Rosenberg, A.H.2
Zubay, G.3
Studier, F.W.4
-
53
-
-
0021958933
-
Codon usage and trna content in unicellular and multicellular organisms
-
Ikemura, T. (1985) Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol. 2, 13-34
-
(1985)
Mol. Biol. Evol
, vol.2
, pp. 13-34
-
-
Ikemura, T.1
-
54
-
-
33846786904
-
Synonymous codon usage in escherichia coli: Selection for translational accuracy
-
Stoletzki, N., and Eyre-Walker, A. (2007) Synonymous codon usage in Escherichia coli: selection for translational accuracy. Mol. Biol. Evol. 24, 374-381
-
(2007)
Mol. Biol. Evol
, vol.24
, pp. 374-381
-
-
Stoletzki, N.1
Eyre-Walker, A.2
-
55
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia, N. T., Ghaemmaghami, S., Newman, J. R., and Weissman, J. S. (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324, 218-223
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
56
-
-
77951715627
-
An evolutionarily conserved mechanism for controlling the efficiency of protein translation
-
Tuller, T., Carmi, A., Vestsigian, K., Navon, S., Dorfan, Y., Zaborske, J., Pan, T., Dahan, O., Furman, I., and Pilpel, Y. (2010) An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell 141, 344-354
-
(2010)
Cell
, vol.141
, pp. 344-354
-
-
Tuller, T.1
Carmi, A.2
Vestsigian, K.3
Navon, S.4
Dorfan, Y.5
Zaborske, J.6
Pan, T.7
Dahan, O.8
Furman, I.9
Pilpel, Y.10
-
57
-
-
79957798888
-
Codon usage: Nature's roadmap to expression and folding of proteins
-
Angov, E. (2011) Codon usage: Nature's roadmap to expression and folding of proteins. Biotechnol. J. 6, 650-659
-
(2011)
Biotechnol. J
, vol.6
, pp. 650-659
-
-
Angov, E.1
-
58
-
-
84872395280
-
A yeast trna mutant that causes pseudohyphal growth exhibits reduced rates of cag codon translation
-
Kemp, A. J., Betney, R., Ciandrini, L., Schwenger, A. C., Romano, M. C., and Stansfield, I. (2013) A yeast tRNA mutant that causes pseudohyphal growth exhibits reduced rates of CAG codon translation. Mol. Microbiol. 87, 284-300
-
(2013)
Mol. Microbiol
, vol.87
, pp. 284-300
-
-
Kemp, A.J.1
Betney, R.2
Ciandrini, L.3
Schwenger, A.C.4
Romano, M.C.5
Stansfield, I.6
-
59
-
-
84861750664
-
Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events
-
Chartier, M., Gaudreault, F., and Najmanovich, R. (2012) Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events. Bioinformatics 28, 1438-1445
-
(2012)
Bioinformatics
, vol.28
, pp. 1438-1445
-
-
Chartier, M.1
Gaudreault, F.2
Najmanovich, R.3
-
60
-
-
62049083910
-
Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
-
Zhang, G., Hubalewska, M., and Ignatova, Z. (2009) Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat. Struct. Mol. Biol. 16, 274-280
-
(2009)
Nat. Struct. Mol. Biol
, vol.16
, pp. 274-280
-
-
Zhang, G.1
Hubalewska, M.2
Ignatova, Z.3
-
61
-
-
83255164895
-
Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo
-
Oh, E., Becker, A. H., Sandikci, A., Huber, D., Chaba, R., Gloge, F., Nichols, R. J., Typas, A., Gross, C. A., Kramer, G., Weissman, J. S., and Bukau, B. (2011) Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo. Cell 147, 1295-1308
-
(2011)
Cell
, vol.147
, pp. 1295-1308
-
-
Oh, E.1
Becker, A.H.2
Sandikci, A.3
Huber, D.4
Chaba, R.5
Gloge, F.6
Nichols, R.J.7
Typas, A.8
Gross, C.A.9
Kramer, G.10
Weissman, J.S.11
Bukau, B.12
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