-
1
-
-
38549118801
-
Interactions of elongation factor EF-P with the Escherichia coli ribosome
-
Aoki, H., Xu, J., Emili, A., Chosay, J. G., Golshani, A., and Ganoza, M. C. (2008) Interactions of elongation factor EF-P with the Escherichia coli ribosome. FEBS J. 275, 671-681
-
(2008)
FEBS J
, vol.275
, pp. 671-681
-
-
Aoki, H.1
Xu, J.2
Emili, A.3
Chosay, J.G.4
Golshani, A.5
Ganoza, M.C.6
-
2
-
-
84862931434
-
Post-translational modification by β-lysy-lation is required for activity of Escherichia coli elongation factor P (EF-P)
-
Park, J. H., Johansson, H. E., Aoki, H., Huang, B. X., Kim, H. Y., Ganoza, M. C., and Park, M. H. (2012) Post-translational modification by β-lysy-lation is required for activity of Escherichia coli elongation factor P (EF-P). J. Biol. Chem. 287, 2579-2590
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 2579-2590
-
-
Park, J.H.1
Johansson, H.E.2
Aoki, H.3
Huang, B.X.4
Kim, H.Y.5
Ganoza, M.C.6
Park, M.H.7
-
3
-
-
84855894820
-
Loss of elongation factor P disrupts bacterial outer membrane integrity
-
Zou, S. B., Hersch, S. J., Roy, H., Wiggers, J. B., Leung, A. S., Buranyi, S., Xi e, J. L., Dare, IC, Ibba, M., and Navarre, W. W. (2012) Loss of elongation factor P disrupts bacterial outer membrane integrity, J. Bacteriol. 194, 413-425
-
(2012)
J. Bacteriol.
, vol.194
, pp. 413-425
-
-
Zou, S.B.1
Hersch, S.J.2
Roy, H.3
Wiggers, J.B.4
Leung, A.S.5
Buranyi, S.6
Xi, E.J.L.7
Dare, I.C.8
Ibba, M.9
Navarre, W.W.10
-
4
-
-
69249118597
-
Formation of the first peptide bond: The structure of EF-P bound to the 70S ribosome
-
Blaha, G., Stanley, R. E., and Steitz, T. A. (2009) Formation of the first peptide bond: the structure of EF-P bound to the 70S ribosome. Science 325, 966-970
-
(2009)
Science
, vol.325
, pp. 966-970
-
-
Blaha, G.1
Stanley, R.E.2
Steitz, T.A.3
-
5
-
-
84871921644
-
EF-P is essential for rapid synthesis of proteins containing consecutive proline residues
-
Doerfel, L. IC, Wohlgemuth, I., Kothe, C., Peske, F., Urlaub, H., and Rodnina, M. V. (2013) EF-P is essential for rapid synthesis of proteins containing consecutive proline residues. Science 339, 85-88
-
(2013)
Science
, vol.339
, pp. 85-88
-
-
Doerfel, L.I.C.1
Wohlgemuth, I.2
Kothe, C.3
Peske, F.4
Urlaub, H.5
Rodnina, M.V.6
-
6
-
-
84871918588
-
Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches
-
Ude, S., Lassak, J., Starosta, A. L., Kraxenberger, T., Wilson, D. N, and Jung, K. (2013) Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches. Science 339, 82-85
-
(2013)
Science
, vol.339
, pp. 82-85
-
-
Ude, S.1
Lassak, J.2
Starosta, A.L.3
Kraxenberger, T.4
Wilson, D.N.5
Jung, K.6
-
7
-
-
77956339569
-
A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P
-
Yanagisawa, T., Sumida, T., Ishii, R., Takemoto, C., and Yokoyama, S. (2010) A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P. Nat. Struct. Mol. Biol. 17, 1136-1143
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1136-1143
-
-
Yanagisawa, T.1
Sumida, T.2
Ishii, R.3
Takemoto, C.4
Yokoyama, S.5
-
8
-
-
77955474903
-
PoxA, YjeK, and elongation factor P coordinately modulate virulence and drug resistance in Salmonella enterica
-
Navarre, W. W., Zou, S. B., Roy, H., Xie, J. L., Savchenko, A., Singer, A., Edvokimova, E., Prost, L. R., Kumar, R., Ibba, M., and Fang, F. C. (2010) PoxA, YjeK, and elongation factor P coordinately modulate virulence and drug resistance in Salmonella enterica. Mol. Cell 39, 209-221
-
(2010)
Mol. Cell
, vol.39
, pp. 209-221
-
-
Navarre, W.W.1
Zou, S.B.2
Roy, H.3
Xie, J.L.4
Savchenko, A.5
Singer, A.6
Edvokimova, E.7
Prost, L.R.8
Kumar, R.9
Ibba, M.10
Fang, F.C.11
-
9
-
-
80052963243
-
The tRNA synthetase paralog PoxA modifies elongation factor-P with (Ä)-β-lysine
-
Roy, H., Zou, S. B., Bullwinkle, T. J., Wolfe, B. S., Gilreath, M. S., Forsyth, C. J., Navarre, W. W., and Ibba, M. (2011) The tRNA synthetase paralog PoxA modifies elongation factor-P with (Ä)-β-lysine. Nat. Chem. Biol. 7, 667-669
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 667-669
-
-
Roy, H.1
Zou, S.B.2
Bullwinkle, T.J.3
Wolfe, B.S.4
Gilreath, M.S.5
Forsyth, C.J.6
Navarre, W.W.7
Ibba, M.8
-
10
-
-
84864283412
-
Lys34 of translation elongation factor EF-P is hydroxylated by YfcM
-
Peil, L., Starosta, A. L., Virumäe, K., Atkinson, G. C., Tenson, T., Remme, J., and Wilson, D. N. (2012) Lys34 of translation elongation factor EF-P is hydroxylated by YfcM. Nat. Chem. Biol. 8, 695-697
-
(2012)
Nat. Chem. Biol.
, vol.8
, pp. 695-697
-
-
Peil, L.1
Starosta, A.L.2
Virumäe, K.3
Atkinson, G.C.4
Tenson, T.5
Remme, J.6
Wilson, D.N.7
-
11
-
-
77953039922
-
Functional significance of eIF5A and its hypusine modification in eukaryotes
-
Park, M. H., Nishimura, K., Zanelli, C. F., and Valentini, S. R. (2010) Functional significance of eIF5A and its hypusine modification in eukaryotes. Amino Acids 38, 491-500
-
(2010)
Amino Acids
, vol.38
, pp. 491-500
-
-
Park, M.H.1
Nishimura, K.2
Zanelli, C.F.3
Valentini, S.R.4
-
12
-
-
65549167195
-
Hypusine-contain-ing protein eIF5A promotes translation elongation
-
Saini, P., Eyler, D. E., Green, R., and Dever, T. E. (2009) Hypusine-contain-ing protein eIF5A promotes translation elongation. Nature 459, 118-121
-
(2009)
Nature
, vol.459
, pp. 118-121
-
-
Saini, P.1
Eyler, D.E.2
Green, R.3
Dever, T.E.4
-
13
-
-
0021925965
-
Stimulation of pepti-dyltransferase reactions by a soluble protein
-
Ganoza, M. C., Zahid, N, and Baxter, R. M. (1985) Stimulation of pepti-dyltransferase reactions by a soluble protein. Eur. J. Biochem. 146, 287-294
-
(1985)
Eur. J. Biochem.
, vol.146
, pp. 287-294
-
-
Ganoza, M.C.1
Zahid, N.2
Baxter, R.M.3
-
14
-
-
0030923669
-
Molecular characterization of the prokaryotic efp gene product involved in a pepti-dyltransferase reaction
-
Aoki, H., Adams, S. L., Turner, M. A., and Ganoza, M. C. (1997) Molecular characterization of the prokaryotic efp gene product involved in a pepti-dyltransferase reaction. Biochimie 79, 7-11
-
(1997)
Biochimie
, vol.79
, pp. 7-11
-
-
Aoki, H.1
Adams, S.L.2
Turner, M.A.3
Ganoza, M.C.4
-
15
-
-
35548938590
-
Phenylalanyl-tRNA synthetase editing defects result in efficient mistranslation of phenylalanine codons as tyrosine
-
Ling, J., Yadavalli, S. S., and Ibba, M. (2007) Phenylalanyl-tRNA synthetase editing defects result in efficient mistranslation of phenylalanine codons as tyrosine. RNA 13, 1881-1886
-
(2007)
RNA
, vol.13
, pp. 1881-1886
-
-
Ling, J.1
Yadavalli, S.S.2
Ibba, M.3
-
16
-
-
2342441329
-
Divergence in noncognate amino acid recognition between class i and class II lysyl-tRNA synthetases
-
Levengood, J., Ataide, S. F., Roy, H., and Ibba, M. (2004) Divergence in noncognate amino acid recognition between class I and class II lysyl-tRNA synthetases. Biol. Chem. 279, 17707-17714
-
(2004)
Biol. Chem.
, vol.279
, pp. 17707-17714
-
-
Levengood, J.1
Ataide, S.F.2
Roy, H.3
Ibba, M.4
-
17
-
-
10644277147
-
Post-transfer editing in vitro and in vivo by the β subunit of phenylalanyl-tRNA synthetase
-
Roy, H., Ling, J., Irnov, M., and Ibba, M. (2004) Post-transfer editing in vitro and in vivo by the β subunit of phenylalanyl-tRNA synthetase. EMBO 7.23, 4639-4648
-
(2004)
EMBO
, vol.723
, pp. 4639-4648
-
-
Roy, H.1
Ling, J.2
Irnov, M.3
Ibba, M.4
-
18
-
-
38649091983
-
Preparation and evaluation of acy-lated tRNAs
-
Walker, S. E., and Fredrick, K. (2008) Preparation and evaluation of acy-lated tRNAs. Methods 44, 81-86
-
(2008)
Methods
, vol.44
, pp. 81-86
-
-
Walker, S.E.1
Fredrick, K.2
-
19
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K. A., Tomita, M., Wanner, B. L., and Mori, H. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2, 2006.0008
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 2006-0008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
20
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K. A., and Wanner, B. L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sei. U.S.A. 97, 6640-6645
-
(2000)
Proc. Natl. Acad. Sei. U.S.A.
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
21
-
-
27944445035
-
Destabi-lization of the P site codon-anticodon helix results from movement of tRNA into the P/E hybrid state within the ribosome
-
McGarry, K. G., Walker, S. E., Wang, H., and Fredrick, K. (2005) Destabi-lization of the P site codon-anticodon helix results from movement of tRNA into the P/E hybrid state within the ribosome. Mol. Cell 20, 613-622
-
(2005)
Mol. Cell
, vol.20
, pp. 613-622
-
-
McGarry, K.G.1
Walker, S.E.2
Wang, H.3
Fredrick, K.4
-
22
-
-
0026048799
-
Cloning, sequencing, and overexpression of the gene for prokaryotic factor EF-P involved in peptide bond synthesis
-
Aoki, H., Adams, S. L., Chung, D. G., Yaguchi, M., Chuang, S. E., and Ganoza, M. C. (1991) Cloning, sequencing, and overexpression of the gene for prokaryotic factor EF-P involved in peptide bond synthesis. Nucleic Acids Res. 19, 6215-6220
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 6215-6220
-
-
Aoki, H.1
Adams, S.L.2
Chung, D.G.3
Yaguchi, M.4
Chuang, S.E.5
Ganoza, M.C.6
-
23
-
-
61649115440
-
Resampling and editing of mischarged tRNA prior to translation elongation
-
Ling, J., So, B. R., Yadavalli, S. S., Roy, H., Shoji, S., Fredrick, K., Musier-Forsyth, IC, and Ibba, M. (2009) Resampling and editing of mischarged tRNA prior to translation elongation. Mol. Cell 33, 654-660
-
(2009)
Mol. Cell
, vol.33
, pp. 654-660
-
-
Ling, J.1
So, B.R.2
Yadavalli, S.S.3
Roy, H.4
Shoji, S.5
Fredrick, K.6
Musier-Forsyth, I.C.7
Ibba, M.8
-
24
-
-
80054080054
-
β-Lysine discrimination by lysyl-tRNA synthetase
-
Gilreath, M. S., Roy, H., Bullwinkle, T. J., Katz, A., Navarre, W. W., and Ibba, M. (2011) β-Lysine discrimination by lysyl-tRNA synthetase. FEBS Lett. 585, 3284-3288
-
(2011)
FEBS Lett.
, vol.585
, pp. 3284-3288
-
-
Gilreath, M.S.1
Roy, H.2
Bullwinkle, T.J.3
Katz, A.4
Navarre, W.W.5
Ibba, M.6
-
25
-
-
38649088907
-
p]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation
-
p]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation. Methods 44, 74-80
-
(2008)
Methods
, vol.44
, pp. 74-80
-
-
Ledoux, S.1
Uhlenbeck, O.C.2
-
26
-
-
76749125868
-
Predicting the pathway involved in post-translational modification of elongation factor P in a subset of bacterial species
-
Bailly, M., and de Crécy-Lagard, V. (2010) Predicting the pathway involved in post-translational modification of elongation factor P in a subset of bacterial species. Biol. Direct. 5, 3
-
(2010)
Biol. Direct.
, vol.5
, pp. 3
-
-
Bailly, M.1
De Crécy-Lagard, V.2
-
27
-
-
85011940605
-
Elongation factor P mediates a novel post-transcriptional regulatory pathway critical for bacterial virulence
-
Zou, S. B., Roy, H., Ibba, M., and Navarre, W. W. (2011) Elongation factor P mediates a novel post-transcriptional regulatory pathway critical for bacterial virulence. Virulence 2, 147-151
-
(2011)
Virulence
, vol.2
, pp. 147-151
-
-
Zou, S.B.1
Roy, H.2
Ibba, M.3
Navarre, W.W.4
-
28
-
-
78049250815
-
Revisiting the structures of several antibiotics bound to the bacterial ribosome
-
Bulkley, D., Innis, C. A., Blaha, G., and Steitz, T. A. (2010) Revisiting the structures of several antibiotics bound to the bacterial ribosome. Proc. Natl. Acad. Sei. U.S.A. 107, 17158-17163
-
(2010)
Proc. Natl. Acad. Sei. U.S.A.
, vol.107
, pp. 17158-17163
-
-
Bulkley, D.1
Innis, C.A.2
Blaha, G.3
Steitz, T.A.4
-
29
-
-
33749827782
-
Characterization of a high-throughput screening assay for inhibitors of elongation factor P and ribosomal peptidyl transferase activity
-
Swaney, S., McCroskey, M., Shinabarger, D., Wang, Z., Turner, B. A., and Parker, C N. (2006) Characterization of a high-throughput screening assay for inhibitors of elongation factor P and ribosomal peptidyl transferase activity. Biomol. Screen. 11, 736-742
-
(2006)
Biomol. Screen.
, vol.11
, pp. 736-742
-
-
Swaney, S.1
McCroskey, M.2
Shinabarger, D.3
Wang, Z.4
Turner, B.A.5
Parker, C.N.6
-
30
-
-
0036177483
-
A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits
-
Schmeing, T. M., Seila, A. C, Hansen, J. L., Freeborn, B., Soukup, J. IC, Scaringe, S. A., Strobel, S. A., Moore, P. B., and Steitz, T. A. (2002) A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits. Nat. Struct. Biol. 9, 225-230
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 225-230
-
-
Schmeing, T.M.1
Seila, A.C.2
Hansen, J.L.3
Freeborn, B.4
Soukup, J.I.C.5
Scaringe, S.A.6
Strobel, S.A.7
Moore, P.B.8
Steitz, T.A.9
-
31
-
-
34250644283
-
Importance of tRNA interactions with 23S rRNA for peptide bond formation on the ribosome: Studies with substrate analogs
-
Beringer, M., and Rodnina, M. V. (2007) Importance of tRNA interactions with 23S rRNA for peptide bond formation on the ribosome: studies with substrate analogs. Biol. Chem. 388, 687-691
-
(2007)
Biol. Chem.
, vol.388
, pp. 687-691
-
-
Beringer, M.1
Rodnina, M.V.2
-
32
-
-
0033838039
-
Peptide bond synthesis: Function of the efp gene product
-
Ganoza, M.C., and Aoki, H. (2000) Peptide bond synthesis: function of the efp gene product. Biol. Chem. 381, 553-559
-
(2000)
Biol. Chem.
, vol.381
, pp. 553-559
-
-
Ganoza, M.C.1
Aoki, H.2
-
33
-
-
62549083518
-
Specificity of the ribosomal A site for aminoacyl-tRNAs
-
Dale, T., Fahlman, R. P., Olejniczak, M., and Uhlenbeck, O. C (2009) Specificity of the ribosomal A site for aminoacyl-tRNAs. Nucleic Acids Res. 37, 1202-1210
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1202-1210
-
-
Dale, T.1
Fahlman, R.P.2
Olejniczak, M.3
Uhlenbeck, O.C.4
|