메뉴 건너뛰기




Volumn 11, Issue 7, 2014, Pages 942-952

RNA structural constraints in the evolution of the influenza A virus genome NP segment

Author keywords

Influenza A virus; Mutual information; Negative sense RNA viruses; RNA pseudoknot; RNA structure

Indexed keywords

NUCLEOPROTEIN; NUCLEOTIDE; RNA; CORE PROTEIN; NP PROTEIN, INFLUENZA A VIRUS; RNA BINDING PROTEIN; VIRUS RNA;

EID: 84907580481     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.29730     Document Type: Article
Times cited : (38)

References (68)
  • 1
    • 71849107774 scopus 로고    scopus 로고
    • Cis-acting RNA elements in human and animal plus-strand RNA viruses
    • PMID:19781674
    • Liu Y, Wimmer E, Paul AV. Cis-acting RNA elements in human and animal plus-strand RNA viruses. Biochim Biophys Acta 2009; 1789:495-517; PMID:19781674; http://dx.doi.org/10.1016/j.bbagrm.2009.09.007
    • (2009) Biochim Biophys Acta , vol.1789 , pp. 495-517
    • Liu, Y.1    Wimmer, E.2    Paul, A.V.3
  • 2
    • 4344619191 scopus 로고    scopus 로고
    • Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence
    • PMID:15273323
    • Simmonds P, Tuplin A, Evans DJ. Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence. RNA 2004; 10:1337-51; PMID:15273323; http://dx.doi.org/10.1261/rna.7640104
    • (2004) RNA , vol.10 , pp. 1337-1351
    • Simmonds, P.1    Tuplin, A.2    Evans, D.J.3
  • 3
    • 0033039492 scopus 로고    scopus 로고
    • Structural constraints on RNA virus evolution
    • PMID:10364330
    • Simmonds P, Smith DB. Structural constraints on RNA virus evolution. J Virol 1999; 73:5787-94; PMID:10364330
    • (1999) J Virol , vol.73 , pp. 5787-5794
    • Simmonds, P.1    Smith, D.B.2
  • 4
    • 0345059165 scopus 로고    scopus 로고
    • Error thresholds and the constraints to RNA virus evolution
    • PMID:14659685
    • Holmes EC. Error thresholds and the constraints to RNA virus evolution. Trends Microbiol 2003; 11:543-6; PMID:14659685; http://dx.doi.org/10.1016/j.tim.2003.10.006
    • (2003) Trends Microbiol , vol.11 , pp. 543-546
    • Holmes, E.C.1
  • 5
    • 84885164210 scopus 로고    scopus 로고
    • The genome-packaging signal of the influenza A virus genome comprises a genome incorporation signal and a genome-bundling signal
    • PMID:23926345
    • Goto H, Muramoto Y, Noda T, Kawaoka Y. The genome-packaging signal of the influenza A virus genome comprises a genome incorporation signal and a genome-bundling signal. J Virol 2013; 87:11316-22; PMID:23926345; http://dx.doi.org/10.1128/JVI.01301-13
    • (2013) J Virol , vol.87 , pp. 11316-11322
    • Goto, H.1    Muramoto, Y.2    Noda, T.3    Kawaoka, Y.4
  • 6
    • 33847044691 scopus 로고    scopus 로고
    • The evolution of epidemic influenza
    • PMID:17262054
    • Nelson MI, Holmes EC. The evolution of epidemic influenza. Nat Rev Genet 2007; 8:196-205; PMID:17262054; http://dx.doi.org/10.1038/nrg2053
    • (2007) Nat Rev Genet , vol.8 , pp. 196-205
    • Nelson, M.I.1    Holmes, E.C.2
  • 7
    • 67650917906 scopus 로고    scopus 로고
    • The structure of a biologically active influenza virus ribonucleoprotein complex
    • PMID:19557158
    • Coloma R, Valpuesta JM, Arranz R, Carrascosa JL, Ortín J, Martín-Benito J. The structure of a biologically active influenza virus ribonucleoprotein complex. PLoS Pathog 2009; 5:e1000491; PMID:19557158; http://dx.doi.org/10.1371/journal.ppat.1000491
    • (2009) PLoS Pathog , vol.5 , pp. e1000491
    • Coloma, R.1    Valpuesta, J.M.2    Arranz, R.3    Carrascosa, J.L.4    Ortín, J.5    Martín-Benito, J.6
  • 8
    • 0025299610 scopus 로고
    • Reconstitution of influenza virus RNA-nucleoprotein complexes structurally resembling native viral ribonucleoprotein cores
    • PMID:2358455
    • Yamanaka K, Ishihama A, Nagata K. Reconstitution of influenza virus RNA-nucleoprotein complexes structurally resembling native viral ribonucleoprotein cores. J Biol Chem 1990; 265:11151-5; PMID:2358455
    • (1990) J Biol Chem , vol.265 , pp. 11151-11155
    • Yamanaka, K.1    Ishihama, A.2    Nagata, K.3
  • 9
    • 62349121429 scopus 로고    scopus 로고
    • The role of RNA folding free energy in the evolution of the polymerase genes of the influenza A virus
    • PMID:19216739
    • Brower-Sinning R, Carter DM, Crevar CJ, Ghedin E, Ross TM, Benos PV. The role of RNA folding free energy in the evolution of the polymerase genes of the influenza A virus. Genome Biol 2009; 10:R18; PMID:19216739; http://dx.doi.org/10.1186/gb-2009-10-2-r18
    • (2009) Genome Biol , vol.10 , pp. R18
    • Brower-Sinning, R.1    Carter, D.M.2    Crevar, C.J.3    Ghedin, E.4    Ross, T.M.5    Benos, P.V.6
  • 10
    • 84862012854 scopus 로고    scopus 로고
    • Influenza A virus coding regions exhibit host-specific global ordered RNA structure
    • PMID:22558296
    • Priore SF, Moss WN, Turner DH. Influenza A virus coding regions exhibit host-specific global ordered RNA structure. PLoS One 2012; 7:e35989; PMID:22558296; http://dx.doi.org/10.1371/journal.pone.0035989
    • (2012) PLoS One , vol.7 , pp. e35989
    • Priore, S.F.1    Moss, W.N.2    Turner, D.H.3
  • 11
    • 33847333917 scopus 로고    scopus 로고
    • An RNA conformational shift in recent H5N1 influenza A viruses
    • PMID:17090581
    • Gultyaev AP, Heus HA, Olsthoorn RC. An RNA conformational shift in recent H5N1 influenza A viruses. Bioinformatics 2007; 23:272-6; PMID:17090581; http://dx.doi.org/10.1093/bioinformatics/btl559
    • (2007) Bioinformatics , vol.23 , pp. 272-276
    • Gultyaev, A.P.1    Heus, H.A.2    Olsthoorn, R.C.3
  • 12
    • 77953753310 scopus 로고    scopus 로고
    • A family of non-classical pseudoknots in influenza A and B viruses
    • PMID:20200490
    • Gultyaev AP, Olsthoorn RC. A family of non-classical pseudoknots in influenza A and B viruses. RNA Biol 2010; 7:125-9; PMID:20200490; http://dx.doi.org/10.4161/rna.7.2.11287
    • (2010) RNA Biol , vol.7 , pp. 125-129
    • Gultyaev, A.P.1    Olsthoorn, R.C.2
  • 13
    • 78649300987 scopus 로고    scopus 로고
    • Influenza virus RNA structure: Unique and common features
    • PMID:20923332
    • Gultyaev AP, Fouchier RA, Olsthoorn RC. Influenza virus RNA structure: unique and common features. Int Rev Immunol 2010; 29:533-56; PMID:20923332; http://dx.doi.org/10.3109/08830185.2010.507828
    • (2010) Int Rev Immunol , vol.29 , pp. 533-556
    • Gultyaev, A.P.1    Fouchier, R.A.2    Olsthoorn, R.C.3
  • 14
    • 79956225207 scopus 로고    scopus 로고
    • Identification of potential conserved RNA secondary structure throughout influenza A coding regions
    • PMID:21536710
    • Moss WN, Priore SF, Turner DH. Identification of potential conserved RNA secondary structure throughout influenza A coding regions. RNA 2011; 17:991-1011; PMID:21536710; http://dx.doi.org/10.1261/rna.2619511
    • (2011) RNA , vol.17 , pp. 991-1011
    • Moss, W.N.1    Priore, S.F.2    Turner, D.H.3
  • 15
    • 84862003023 scopus 로고    scopus 로고
    • The 3′ splice site of influenza A segment 7 mRNA can exist in two conformations: A pseudoknot and a hairpin
    • PMID:22685560
    • Moss WN, Dela-Moss LI, Kierzek E, Kierzek R, Priore SF, Turner DH. The 3′ splice site of influenza A segment 7 mRNA can exist in two conformations: a pseudoknot and a hairpin. PLoS One 2012; 7:e38323; PMID:22685560; http://dx.doi.org/10.1371/journal.pone.0038323
    • (2012) PLoS One , vol.7 , pp. e38323
    • Moss, W.N.1    Dela-Moss, L.I.2    Kierzek, E.3    Kierzek, R.4    Priore, S.F.5    Turner, D.H.6
  • 16
    • 84875201357 scopus 로고    scopus 로고
    • The influenza A segment 7 mRNA 3′ splice site pseudoknot/hairpin family
    • PMID:23064116
    • Moss WN, Dela-Moss LI, Priore SF, Turner DH. The influenza A segment 7 mRNA 3′ splice site pseudoknot/hairpin family. RNA Biol 2012; 9:1305-10; PMID:23064116; http://dx.doi.org/10.4161/rna.22343
    • (2012) RNA Biol , vol.9 , pp. 1305-1310
    • Moss, W.N.1    Dela-Moss, L.I.2    Priore, S.F.3    Turner, D.H.4
  • 17
    • 0025237152 scopus 로고
    • Evolution of the nucleoprotein gene of influenza A virus
    • PMID:2319644
    • Gorman OT, Bean WJ, Kawaoka Y, Webster RG. Evolution of the nucleoprotein gene of influenza A virus. J Virol 1990; 64:1487-97; PMID:2319644
    • (1990) J Virol , vol.64 , pp. 1487-1497
    • Gorman, O.T.1    Bean, W.J.2    Kawaoka, Y.3    Webster, R.G.4
  • 18
    • 7644243243 scopus 로고    scopus 로고
    • Novel origin of the 1918 pandemic influenza virus nucleoprotein gene
    • PMID:15507633
    • Reid AH, Fanning TG, Janczewski TA, Lourens RM, Taubenberger JK. Novel origin of the 1918 pandemic influenza virus nucleoprotein gene. J Virol 2004; 78:12462-70; PMID:15507633; http://dx.doi.org/10.1128/JVI.78.22.12462-12470.2004
    • (2004) J Virol , vol.78 , pp. 12462-12470
    • Reid, A.H.1    Fanning, T.G.2    Janczewski, T.A.3    Lourens, R.M.4    Taubenberger, J.K.5
  • 19
    • 58249121729 scopus 로고    scopus 로고
    • RNAalifold: Improved consensus structure prediction for RNA alignments
    • PMID:19014431
    • Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF. RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinformatics 2008; 9:474; PMID:19014431; http://dx.doi.org/10.1186/1471-2105-9-474
    • (2008) BMC Bioinformatics , vol.9 , pp. 474
    • Bernhart, S.H.1    Hofacker, I.L.2    Will, S.3    Gruber, A.R.4    Stadler, P.F.5
  • 20
    • 33845724694 scopus 로고    scopus 로고
    • Contributions of two nuclear localization signals of influenza A virus nucleoprotein to viral replication
    • PMID:17050598
    • Ozawa M, Fujii K, Muramoto Y, Yamada S, Yamayoshi S, Takada A, Goto H, Horimoto T, Kawaoka Y. Contributions of two nuclear localization signals of influenza A virus nucleoprotein to viral replication. J Virol 2007; 81:30-41; PMID:17050598; http://dx.doi.org/10.1128/JVI.01434-06
    • (2007) J Virol , vol.81 , pp. 30-41
    • Ozawa, M.1    Fujii, K.2    Muramoto, Y.3    Yamada, S.4    Yamayoshi, S.5    Takada, A.6    Goto, H.7    Horimoto, T.8    Kawaoka, Y.9
  • 21
    • 0022423219 scopus 로고
    • A new principle of RNA folding based on pseudoknotting
    • PMID:4000943
    • Pleij CW, Rietveld K, Bosch L. A new principle of RNA folding based on pseudoknotting. Nucleic Acids Res 1985; 13:1717-31; PMID:4000943; http://dx.doi.org/10.1093/nar/13.5.1717
    • (1985) Nucleic Acids Res , vol.13 , pp. 1717-1731
    • Pleij, C.W.1    Rietveld, K.2    Bosch, L.3
  • 22
    • 0032948718 scopus 로고    scopus 로고
    • An approximation of loop free energy values of RNA H-pseudoknots
    • PMID:10334330
    • Gultyaev AP, van Batenburg FH, Pleij CW. An approximation of loop free energy values of RNA H-pseudoknots. RNA 1999; 5:609-17; PMID:10334330; http://dx.doi.org/10.1017/S135583829998189X
    • (1999) RNA , vol.5 , pp. 609-617
    • Gultyaev, A.P.1    Van Batenburg, F.H.2    Pleij, C.W.3
  • 23
    • 33744547883 scopus 로고    scopus 로고
    • Predicting RNA pseudoknot folding thermodynamics
    • PMID:16709732
    • Cao S, Chen SJ. Predicting RNA pseudoknot folding thermodynamics. Nucleic Acids Res 2006; 34:2634-52; PMID:16709732; http://dx.doi.org/10.1093/nar/gkl346
    • (2006) Nucleic Acids Res , vol.34 , pp. 2634-2652
    • Cao, S.1    Chen, S.J.2
  • 26
    • 0028055149 scopus 로고
    • Influenza virus NS1 protein stimulates translation of the M1 protein
    • PMID:7508995
    • Enami K, Sato TA, Nakada S, Enami M. Influenza virus NS1 protein stimulates translation of the M1 protein. J Virol 1994; 68:1432-7; PMID:7508995
    • (1994) J Virol , vol.68 , pp. 1432-1437
    • Enami, K.1    Sato, T.A.2    Nakada, S.3    Enami, M.4
  • 27
    • 0000075974 scopus 로고    scopus 로고
    • Regulation of eukaryotic protein synthesis: Selective influenza viral mRNA translation is mediated by the cellular RNA-binding protein GRSF-1
    • PMID:10359774
    • Park YW, Wilusz J, Katze MG. Regulation of eukaryotic protein synthesis: selective influenza viral mRNA translation is mediated by the cellular RNA-binding protein GRSF-1. Proc Natl Acad Sci U S A 1999; 96:6694-9; PMID:10359774; http://dx.doi.org/10.1073/pnas.96.12.6694
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 6694-6699
    • Park, Y.W.1    Wilusz, J.2    Katze, M.G.3
  • 28
    • 4444306316 scopus 로고    scopus 로고
    • Molecular characterization of low pathogenicity H7N3 avian influenza viruses isolated in Italy
    • PMID:15283425
    • Di Trani L, Bedini B, Cordioli P, Muscillo M, Vignolo E, Moreno A, Tollis M. Molecular characterization of low pathogenicity H7N3 avian influenza viruses isolated in Italy. Avian Dis 2004; 48:376-83; http://dx.doi.org/10.1637/7088; PMID:15283425
    • (2004) Avian Dis , vol.48 , pp. 376-383
    • Di Trani, L.1    Bedini, B.2    Cordioli, P.3    Muscillo, M.4    Vignolo, E.5    Moreno, A.6    Tollis, M.7
  • 29
    • 0029825704 scopus 로고    scopus 로고
    • Previous H1N1 influenza A viruses circulating in the Mongolian population
    • PMID:8856033
    • Anchlan D, Ludwig S, Nymadawa P, Mendsaikhan J, Scholtissek C. Previous H1N1 influenza A viruses circulating in the Mongolian population. Arch Virol 1996; 141:1553-69; PMID:8856033; http://dx.doi.org/10.1007/BF01718254
    • (1996) Arch Virol , vol.141 , pp. 1553-1569
    • Anchlan, D.1    Ludwig, S.2    Nymadawa, P.3    Mendsaikhan, J.4    Scholtissek, C.5
  • 30
    • 0025799868 scopus 로고
    • Evolution of pig influenza viruses
    • PMID:2053297
    • Schultz U, Fitch WM, Ludwig S, Mandler J, Scholtissek C. Evolution of pig influenza viruses. Virology 1991; 183:61-73; PMID:2053297; http://dx.doi.org/10.1016/0042-6822(91)90118-U
    • (1991) Virology , vol.183 , pp. 61-73
    • Schultz, U.1    Fitch, W.M.2    Ludwig, S.3    Mandler, J.4    Scholtissek, C.5
  • 33
    • 84855858725 scopus 로고    scopus 로고
    • Phylogenetic analysis of H6 influenza viruses isolated from rosy-billed pochards (Netta peposaca) in Argentina reveals the presence of different HA gene clusters
    • PMID:21976652
    • Rimondi A, Xu K, Craig MI, Shao H, Ferreyra H, Rago MV, Romano M, Uhart M, Sutton T, Ferrero A, et al. Phylogenetic analysis of H6 influenza viruses isolated from rosy-billed pochards (Netta peposaca) in Argentina reveals the presence of different HA gene clusters. J Virol 2011; 85:13354-62; PMID:21976652; http://dx.doi.org/10.1128/JVI.05946-11
    • (2011) J Virol , vol.85 , pp. 13354-13362
    • Rimondi, A.1    Xu, K.2    Craig, M.I.3    Shao, H.4    Ferreyra, H.5    Rago, M.V.6    Romano, M.7    Uhart, M.8    Sutton, T.9    Ferrero, A.10
  • 35
    • 83355164475 scopus 로고    scopus 로고
    • Swine influenza virus infection in different age groups of pigs in farrow-to-finish farms in Thailand
    • PMID:22166074
    • Takemae N, Parchariyanon S, Ruttanapumma R, Hiromoto Y, Hayashi T, Uchida Y, Saito T. Swine influenza virus infection in different age groups of pigs in farrow-to-finish farms in Thailand. Virol J 2011; 8:537; PMID:22166074; http://dx.doi.org/10.1186/1743-422X-8-537
    • (2011) Virol J , vol.8 , pp. 537
    • Takemae, N.1    Parchariyanon, S.2    Ruttanapumma, R.3    Hiromoto, Y.4    Hayashi, T.5    Uchida, Y.6    Saito, T.7
  • 37
    • 0026466830 scopus 로고
    • Identifying constraints on the higher-order structure of RNA: Continued development and application of comparative sequence analysis methods
    • PMID:1454539
    • Gutell RR, Power A, Hertz GZ, Putz EJ, Stormo GD. Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. Nucleic Acids Res 1992; 20:5785-95; PMID:1454539; http://dx.doi.org/10.1093/nar/20.21.5785
    • (1992) Nucleic Acids Res , vol.20 , pp. 5785-5795
    • Gutell, R.R.1    Power, A.2    Hertz, G.Z.3    Putz, E.J.4    Stormo, G.D.5
  • 38
    • 70349970792 scopus 로고    scopus 로고
    • Characterisation of influenza A viruses with mutations in segment 5 packaging signals
    • PMID:19840659
    • Hutchinson EC, Wise HM, Kudryavtseva K, Curran MD, Digard P. Characterisation of influenza A viruses with mutations in segment 5 packaging signals. Vaccine 2009; 27:6270-5; PMID:19840659; http://dx.doi.org/10.1016/j.vaccine.2009.05.053
    • (2009) Vaccine , vol.27 , pp. 6270-6275
    • Hutchinson, E.C.1    Wise, H.M.2    Kudryavtseva, K.3    Curran, M.D.4    Digard, P.5
  • 39
    • 84862017919 scopus 로고    scopus 로고
    • Introduction of silent mutations into the NP gene of influenza A viruses as a possible strategy for the creation of a live attenuated vaccine
    • PMID:22575164
    • Anhlan D, Hrincius ER, Scholtissek C, Ludwig S. Introduction of silent mutations into the NP gene of influenza A viruses as a possible strategy for the creation of a live attenuated vaccine. Vaccine 2012; 30:4480-9; PMID:22575164; http://dx.doi.org/10.1016/j.vaccine.2012.04.070
    • (2012) Vaccine , vol.30 , pp. 4480-4489
    • Anhlan, D.1    Hrincius, E.R.2    Scholtissek, C.3    Ludwig, S.4
  • 41
    • 78650480681 scopus 로고    scopus 로고
    • Origin of the 1918 pandemic H1N1 influenza A virus as studied by codon usage patterns and phylogenetic analysis
    • PMID:21068184
    • Anhlan D, Grundmann N, Makalowski W, Ludwig S, Scholtissek C. Origin of the 1918 pandemic H1N1 influenza A virus as studied by codon usage patterns and phylogenetic analysis. RNA 2011; 17:64-73; PMID:21068184; http://dx.doi.org/10.1261/rna.2395211
    • (2011) RNA , vol.17 , pp. 64-73
    • Anhlan, D.1    Grundmann, N.2    Makalowski, W.3    Ludwig, S.4    Scholtissek, C.5
  • 42
    • 84858265857 scopus 로고    scopus 로고
    • Detecting coevolving positions in a molecule: Why and how to account for phylogeny
    • PMID:21949241
    • Dutheil JY. Detecting coevolving positions in a molecule: why and how to account for phylogeny. Brief Bioinform 2012; 13:228-43; PMID:21949241; http://dx.doi.org/10.1093/bib/bbr048
    • (2012) Brief Bioinform , vol.13 , pp. 228-243
    • Dutheil, J.Y.1
  • 43
    • 84862523226 scopus 로고    scopus 로고
    • Structural constraints identified with covariation analysis in ribosomal RNA
    • PMID:22724009
    • Shang L, Xu W, Ozer S, Gutell RR. Structural constraints identified with covariation analysis in ribosomal RNA. PLoS One 2012; 7:e39383; PMID:22724009; http://dx.doi.org/10.1371/journal.pone.0039383
    • (2012) PLoS One , vol.7 , pp. e39383
    • Shang, L.1    Xu, W.2    Ozer, S.3    Gutell, R.R.4
  • 44
    • 84885573612 scopus 로고    scopus 로고
    • The genesis and source of the H7N9 influenza viruses causing human infections in China
    • PMID:23965623
    • Lam TT, Wang J, Shen Y, Zhou B, Duan L, Cheung CL, Ma C, Lycett SJ, Leung CY, Chen X, et al. The genesis and source of the H7N9 influenza viruses causing human infections in China. Nature 2013; 502:241-4; PMID:23965623; http://dx.doi.org/10.1038/nature12515
    • (2013) Nature , vol.502 , pp. 241-244
    • Lam, T.T.1    Wang, J.2    Shen, Y.3    Zhou, B.4    Duan, L.5    Cheung, C.L.6    Ma, C.7    Lycett, S.J.8    Leung, C.Y.9    Chen, X.10
  • 45
    • 67849087094 scopus 로고    scopus 로고
    • Incorporation of influenza A virus genome segments does not absolutely require wild-type sequences
    • PMID:19297607
    • Fujii K, Ozawa M, Iwatsuki-Horimoto K, Horimoto T, Kawaoka Y. Incorporation of influenza A virus genome segments does not absolutely require wild-type sequences. J Gen Virol 2009; 90:1734-40; PMID:19297607; http://dx.doi.org/10.1099/vir.0.010355-0
    • (2009) J Gen Virol , vol.90 , pp. 1734-1740
    • Fujii, K.1    Ozawa, M.2    Iwatsuki-Horimoto, K.3    Horimoto, T.4    Kawaoka, Y.5
  • 46
    • 84856704565 scopus 로고    scopus 로고
    • Three-dimensional analysis of ribonucleoprotein complexes in influenza A virus
    • PMID:22273677
    • Noda T, Sugita Y, Aoyama K, Hirase A, Kawakami E, Miyazawa A, Sagara H, Kawaoka Y. Three-dimensional analysis of ribonucleoprotein complexes in influenza A virus. Nat Commun 2012; 3:639; PMID:22273677; http://dx.doi.org/10.1038/ncomms1647
    • (2012) Nat Commun , vol.3 , pp. 639
    • Noda, T.1    Sugita, Y.2    Aoyama, K.3    Hirase, A.4    Kawakami, E.5    Miyazawa, A.6    Sagara, H.7    Kawaoka, Y.8
  • 47
    • 84887196632 scopus 로고    scopus 로고
    • Configuration of viral ribonucleoprotein complexes within the influenza A virion
    • PMID:24067952
    • Sugita Y, Sagara H, Noda T, Kawaoka Y. Configuration of viral ribonucleoprotein complexes within the influenza A virion. J Virol 2013; 87:12879-84; PMID:24067952; http://dx.doi.org/10.1128/JVI.02096-13
    • (2013) J Virol , vol.87 , pp. 12879-12884
    • Sugita, Y.1    Sagara, H.2    Noda, T.3    Kawaoka, Y.4
  • 48
    • 84884682370 scopus 로고    scopus 로고
    • The crystal structure and RNA-binding of an orthomyxovirus nucleoprotein
    • PMID:24068932
    • Zheng W, Olson J, Vakharia V, Tao YJ. The crystal structure and RNA-binding of an orthomyxovirus nucleoprotein. PLoS Pathog 2013; 9:e1003624; PMID:24068932; http://dx.doi.org/10.1371/journal.ppat.1003624
    • (2013) PLoS Pathog , vol.9 , pp. e1003624
    • Zheng, W.1    Olson, J.2    Vakharia, V.3    Tao, Y.J.4
  • 49
  • 51
    • 84875475885 scopus 로고    scopus 로고
    • An in vitro network of intermolecular interactions between viral RNA segments of an avian H5N2 influenza A virus: Comparison with a human H3N2 virus
    • PMID:23221636
    • Gavazzi C, Isel C, Fournier E, Moules V, Cavalier A, Thomas D, Lina B, Marquet R. An in vitro network of intermolecular interactions between viral RNA segments of an avian H5N2 influenza A virus: comparison with a human H3N2 virus. Nucleic Acids Res 2013; 41:1241-54; PMID:23221636; http://dx.doi.org/10.1093/nar/gks1181
    • (2013) Nucleic Acids Res , vol.41 , pp. 1241-1254
    • Gavazzi, C.1    Isel, C.2    Fournier, E.3    Moules, V.4    Cavalier, A.5    Thomas, D.6    Lina, B.7    Marquet, R.8
  • 52
    • 84868255586 scopus 로고    scopus 로고
    • Specific temperature-induced perturbations of secondary mRNA structures are associated with the cold-adapted temperature-sensitive phenotype of influenza A virus
    • PMID:22995831
    • Chursov A, Kopetzky SJ, Leshchiner I, Kondofersky I, Theis FJ, Frishman D, Shneider A. Specific temperature-induced perturbations of secondary mRNA structures are associated with the cold-adapted temperature-sensitive phenotype of influenza A virus. RNA Biol 2012; 9:1266-74; PMID:22995831; http://dx.doi.org/10.4161/rna.22081
    • (2012) RNA Biol , vol.9 , pp. 1266-1274
    • Chursov, A.1    Kopetzky, S.J.2    Leshchiner, I.3    Kondofersky, I.4    Theis, F.J.5    Frishman, D.6    Shneider, A.7
  • 53
    • 0027218791 scopus 로고
    • Folding of the MS2 coat protein in Escherichia coli is modulated by translational pauses resulting from mRNA secondary structure and codon usage: A hypothesis
    • PMID:8412226
    • Guisez Y, Robbens J, Remaut E, Fiers W. Folding of the MS2 coat protein in Escherichia coli is modulated by translational pauses resulting from mRNA secondary structure and codon usage: a hypothesis. J Theor Biol 1993; 162:243-52; PMID:8412226; http://dx.doi.org/10.1006/jtbi.1993.1085
    • (1993) J Theor Biol , vol.162 , pp. 243-252
    • Guisez, Y.1    Robbens, J.2    Remaut, E.3    Fiers, W.4
  • 55
    • 33845890539 scopus 로고    scopus 로고
    • The mechanism by which influenza A virus nucleoprotein forms oligomers and binds RNA
    • PMID:17151603
    • Ye Q, Krug RM, Tao YJ. The mechanism by which influenza A virus nucleoprotein forms oligomers and binds RNA. Nature 2006; 444:1078-82; PMID:17151603; http://dx.doi.org/10.1038/nature05379
    • (2006) Nature , vol.444 , pp. 1078-1082
    • Ye, Q.1    Krug, R.M.2    Tao, Y.J.3
  • 56
    • 54049146687 scopus 로고    scopus 로고
    • Structure of the influenza virus A H5N1 nucleoprotein: Implications for RNA binding, oligomerization, and vaccine design
    • PMID:18614582
    • Ng AK, Zhang H, Tan K, Li Z, Liu JH, Chan PK, Li SM, Chan WY, Au SW, Joachimiak A, et al. Structure of the influenza virus A H5N1 nucleoprotein: implications for RNA binding, oligomerization, and vaccine design. FASEB J 2008; 22:3638-47; http://dx.doi.org/10.1096/fj.08-112110; PMID:18614582
    • (2008) FASEB J , vol.22 , pp. 3638-3647
    • Ng, A.K.1    Zhang, H.2    Tan, K.3    Li, Z.4    Liu, J.H.5    Chan, P.K.6    Li, S.M.7    Chan, W.Y.8    Au, S.W.9    Joachimiak, A.10
  • 57
    • 84879018021 scopus 로고    scopus 로고
    • On the role of four small hairpins in the HIV-1 RNA genome
    • PMID:23535706
    • Knoepfel SA, Berkhout B. On the role of four small hairpins in the HIV-1 RNA genome. RNA Biol 2013; 10:540-52; PMID:23535706; http://dx.doi.org/10.4161/rna.24133
    • (2013) RNA Biol , vol.10 , pp. 540-552
    • Knoepfel, S.A.1    Berkhout, B.2
  • 58
    • 84880220185 scopus 로고    scopus 로고
    • Influence of genome-scale RNA structure disruption on the replication of murine norovirus - Similar replication kinetics in cell culture but attenuation of viral fitness in vivo
    • PMID:23630317
    • McFadden N, Arias A, Dry I, Bailey D, Witteveldt J, Evans DJ, Goodfellow I, Simmonds P. Influence of genome-scale RNA structure disruption on the replication of murine norovirus - similar replication kinetics in cell culture but attenuation of viral fitness in vivo. Nucleic Acids Res 2013; 41:6316-31; PMID:23630317; http://dx.doi.org/10.1093/nar/gkt334
    • (2013) Nucleic Acids Res , vol.41 , pp. 6316-6331
    • McFadden, N.1    Arias, A.2    Dry, I.3    Bailey, D.4    Witteveldt, J.5    Evans, D.J.6    Goodfellow, I.7    Simmonds, P.8
  • 60
    • 37849052232 scopus 로고    scopus 로고
    • The influenza virus resource at the National Center for Biotechnology Information
    • PMID:17942553
    • Bao Y, Bolotov P, Dernovoy D, Kiryutin B, Zaslavsky L, Tatusova T, Ostell J, Lipman D. The influenza virus resource at the National Center for Biotechnology Information. J Virol 2008; 82:596-601; PMID:17942553; http://dx.doi.org/10.1128/JVI.02005-07
    • (2008) J Virol , vol.82 , pp. 596-601
    • Bao, Y.1    Bolotov, P.2    Dernovoy, D.3    Kiryutin, B.4    Zaslavsky, L.5    Tatusova, T.6    Ostell, J.7    Lipman, D.8
  • 61
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • PMID:12824337
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003; 31:3406-15; PMID:12824337; http://dx.doi.org/10.1093/nar/gkg595
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 62
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • PMID:10329189
    • Mathews DH, Sabina J, Zuker M, Turner DH. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 1999; 288:911-40; PMID:10329189; http://dx.doi.org/10.1006/jmbi.1999.2700
    • (1999) J Mol Biol , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 63
    • 0028000994 scopus 로고
    • Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding
    • PMID:7524072
    • Walter AE, Turner DH, Kim J, Lyttle MH, Müller P, Mathews DH, Zuker M. Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding. Proc Natl Acad Sci U S A 1994; 91:9218-22; PMID:7524072; http://dx.doi.org/10.1073/pnas.91.20.9218
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 9218-9222
    • Walter, A.E.1    Turner, D.H.2    Kim, J.3    Lyttle, M.H.4    Müller, P.5    Mathews, D.H.6    Zuker, M.7
  • 64
    • 33845362968 scopus 로고    scopus 로고
    • Measuring covariation in RNA alignments: Physical realism improves information measures
    • PMID:17038338
    • Lindgreen S, Gardner PP, Krogh A. Measuring covariation in RNA alignments: physical realism improves information measures. Bioinformatics 2006; 22:2988-95; PMID:17038338; http://dx.doi.org/10.1093/bioinformatics/btl514
    • (2006) Bioinformatics , vol.22 , pp. 2988-2995
    • Lindgreen, S.1    Gardner, P.P.2    Krogh, A.3
  • 65
    • 2442528187 scopus 로고    scopus 로고
    • Efficient generation and growth of influenza virus A/PR/8/34 from eight cDNA fragments
    • PMID:15163504
    • de Wit E, Spronken MI, Bestebroer TM, Rimmelzwaan GF, Osterhaus AD, Fouchier RA. Efficient generation and growth of influenza virus A/PR/8/34 from eight cDNA fragments. Virus Res 2004; 103:155-61; PMID:15163504; http://dx.doi.org/10.1016/j.virusres.2004.02.028
    • (2004) Virus Res , vol.103 , pp. 155-161
    • De Wit, E.1    Spronken, M.I.2    Bestebroer, T.M.3    Rimmelzwaan, G.F.4    Osterhaus, A.D.5    Fouchier, R.A.6
  • 66
    • 0031866073 scopus 로고    scopus 로고
    • Comparison of RNA hybridization, hemagglutination assay, titration of infectious virus and immunofluorescence as methods for monitoring influenza virus replication in vitro
    • PMID:9763129
    • Rimmelzwaan GF, Baars M, Claas EC, Osterhaus AD. Comparison of RNA hybridization, hemagglutination assay, titration of infectious virus and immunofluorescence as methods for monitoring influenza virus replication in vitro. J Virol Methods 1998; 74:57-66; PMID:9763129; http://dx.doi.org/10.1016/S0166-0934(98)00071-8
    • (1998) J Virol Methods , vol.74 , pp. 57-66
    • Rimmelzwaan, G.F.1    Baars, M.2    Claas, E.C.3    Osterhaus, A.D.4
  • 67
    • 34250971354 scopus 로고
    • Beitrag zur kollektiven Behandlung pharmakologischer Reiheversuche
    • Karber G. Beitrag zur kollektiven Behandlung pharmakologischer Reiheversuche. Naunyn-Schmiedeberg. Arch Exp Pathol Pharmacol 1931; 162:480-3; http://dx.doi.org/10.1007/BF01863914
    • (1931) Naunyn-Schmiedeberg. Arch Exp Pathol Pharmacol , vol.162 , pp. 480-483
    • Karber, G.1
  • 68
    • 33748682298 scopus 로고    scopus 로고
    • New low-viscosity overlay medium for viral plaque assays
    • PMID:16945126
    • Matrosovich M, Matrosovich T, Garten W, Klenk HD. New low-viscosity overlay medium for viral plaque assays. Virol J 2006; 3:63; PMID:16945126; http://dx.doi.org/10.1186/1743-422X-3-63
    • (2006) Virol J , vol.3 , pp. 63
    • Matrosovich, M.1    Matrosovich, T.2    Garten, W.3    Klenk, H.D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.