Antigenic and molecular characterization of avian influenza A(H9N2) viruses, Bangladesh

Emerging Infectious Diseases

Volumn 19, Issue 9, 2013, Pages 1393-1402

  Shanmuganatham, Karthik ^a   Feeroz, Mohammed M ^b   Jones Engel, Lisa ^c   Smith, Gavin J D ^d,e   Fourment, Mathieu ^d   Walker, David ^a   McClenaghan, Laura ^a   Alam, S M Rabiul ^b   Hasan, M Kamrul ^b   Seiler, Patrick ^a   Franks, John ^a   Danner, Angie ^a   Barman, Subrata ^a   McKenzie, Pamela ^a   Krauss, Scott ^a   Webby, Richard J ^a   Webster, Robert G ^a  

^a ST JUDE CHILDREN S RESEARCH HOSPITAL   (United States)

^b JAHANGIRNAGAR UNIVERSITY   (Bangladesh)

^c UNIVERSITY OF WASHINGTON   (United States)

^d DUKE NUS MEDICAL SCHOOL   (Singapore)

^e DUKE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMANTADINE; MATRIX PROTEIN; NUCLEOPROTEIN; OSELTAMIVIR; SIALIDASE; VIRUS ANTIGEN;

ANIMAL TISSUE; ANTIGENICITY; ARTICLE; AVIAN INFLUENZA A (H9N2); AVIAN INFLUENZA VIRUS; DISEASE SURVEILLANCE; DISEASE TRANSMISSION; DNA SEQUENCE; HEMAGGLUTINATION INHIBITION TEST; HUMAN; INDIA; INFLUENZA VIRUS A H5N1; MOLECULAR GENETICS; NEWCASTLE DISEASE PARAMYXOVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POULTRY; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SCREENING; SEROLOGY; UNINDEXED SEQUENCE; VIRUS ISOLATION; ANIMAL; BANGLADESH; CHICKEN; CLASSIFICATION; GENETICS; IMMUNOLOGY; INFLUENZA A VIRUS (H9N2); INFLUENZA IN BIRDS; INFLUENZA, HUMAN; PREVALENCE; QUAIL; VIROLOGY; VIRUS GENE;

ANIMALS; ANTIGENS, VIRAL; BANGLADESH; CHICKENS; GENES, VIRAL; HUMANS; INFLUENZA A VIRUS, H9N2 SUBTYPE; INFLUENZA IN BIRDS; INFLUENZA, HUMAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; PREVALENCE; QUAIL;

EID: 84882674688     PISSN: 10806040     EISSN: 10806059     Source Type: Journal    
DOI: 10.3201/eid1909.130336     Document Type: Article

References (40)

1. Butt KM, Smith GJ, Chen H, Zhang LJ, Leung YH, Xu KM, et al. Human infection with an avian H9N2 influenza A virus in Hong Kong in 2003. J Clin Microbiol. 2005;43:5760-7. http://dx.doi. org/10.1128/JCM.43.11.5760-5767.2005
2. Lin YP, Shaw M, Gregory V, Cameron K, Lim W, Klimov A, et al. Avian-to-human transmission of H9N2 subtype influenza A viruses: relationship between H9N2 and H5N1 human isolates. Proc Natl Acad Sci U S A. 2000;97:9654-8. http://dx.doi.org/10.1073/ pnas.160270697
3. Peiris JS, Guan Y, Markwell D, Ghose P, Webster RG, Shortridge KF. Cocirculation of avian H9N2 and contemporary "human" H3N2 influenza A viruses in pigs in southeastern China: potential for genetic reassortment? J Virol. 2001;75:9679-86. http://dx.doi. org/10.1128/JVI.75.20.9679-9686.2001
4. Peiris M, Yuen KY, Leung CW, Chan KH, Ip PLS, Lai RWM, et al. Human infection with influenza H9N2. Lancet. 1999;354: 916-7. http://dx.doi.org/10.1016/S0140-6736(99)03311-5
5. Apurba Chakraborty. Outbreak of mild respiratory disease caused by H5N1 and H9N2 infections among young children in Dhaka, Bangladesh. Health and Science Bulletin (ICDDR, B). 2011 [cited 2012 Dec 18]. http://www.icddrb.org/what-we-do/publications/ cat_view/52-publications/10042-icddrb-periodicals/10048-healthand-science-bulletin-bangla-and-english/11089-vol-9-no-2-english-2011-/11092-outbreak-of-mild-respiratory-disease-caused-by-h5n1-and-h9n2-infections-among-young-children-in-dhaka-bangladesh-2011
6. Guan Y, Shortridge KF, Krauss S, Chin PS, Dyrting KC, Ellis TM, et al. H9N2 influenza viruses possessing H5N1-like internal genomes continue to circulate in poultry in southeastern China. J Virol. 2000;74:9372-80. http://dx.doi.org/10.1128/JVI.74.20. 9372-9380.2000
7. Guan Y, Shortridge KF, Krauss S, Webster RG. Molecular characterization of H9N2 influenza viruses: were they the donors of the "internal" genes of H5N1 viruses in Hong Kong? Proc Natl Acad Sci U S A. 1999;96:9363-7. http://dx.doi.org/10.1073/pnas.96.16.9363
8. Aamir UB, Wernery U, Ilyushina N, Webster RG. Characterization of avian H9N2 influenza viruses from United Arab Emirates 2000 to 2003. Virology. 2007;361:45-55. http://dx.doi.org/10.1016/ j.virol.2006.10.037
9. Alexander DJ. Report on avian influenza in the Eastern Hemisphere during 1997-2002. Avian Dis. 2003;47(Suppl):792-7. http://dx.doi. org/10.1637/0005-2086-47.s3.792
10. Cameron KR, Gregory V, Banks J, Brown IH, Alexander DJ, Hay AJ, et al. H9N2 subtype influenza A viruses in poultry in Pakistan are closely related to the H9N2 viruses responsible for human infection in Hong Kong. Virology. 2000;278:36-41. http://dx.doi. org/10.1006/viro.2000.0585
11. Fusaro A, Monne I, Salviato A, Valastro V, Schivo A, Amarin NM, et al. Phylogeography and evolutionary history of reassortant H9N2 viruses with potential human health implications. J Virol. 2011;85:8413-21.
12. Ge FF, Zhou JP, Liu J, Wang J, Zhang WY, Sheng LP, et al. Genetic evolution of H9 subtype influenza viruses from live poultry markets in Shanghai, China. J Clin Microbiol. 2009;47:3294-300. http://dx.doi.org/10.1128/JCM.00355-09
13. Golender N, Panshin A, Banet-Noach C, Nagar S, Pokamunski S, Pirak M, et al. Genetic characterization of avian influenza viruses isolated in Israel during 2000-2006. Virus Genes. 2008;37:289-97. http://dx.doi.org/10.1007/s11262-008-0272-7
14. Iqbal M, Yaqub T, Reddy K, McCauley JW. Novel genotypes of H9N2 influenza A viruses isolated from poultry in Pakistan containing NS genes similar to highly pathogenic H7N3 and H5N1 viruses. PLoS ONE. 2009;4;e5788. http://dx.doi.org/10.1371/ journal.pone.0005788
15. Lee YJ, Shin JY, Song MS, Lee YM, Choi JG, Lee EK, et al. Continuing evolution of H9 influenza viruses in Korean poultry. Virology. 2007;359:313-23. http://dx.doi.org/10.1016/j.virol.2006.09.025
16. Li C, Yu K, Tian G, Yu D, Liu L, Jing B, et al. Evolution of H9N2 influenza viruses from domestic poultry in Mainland China. Virology. 2005;340:70-83. http://dx.doi.org/10.1016/j.virol.2005.06.025
17. Toroghi R, Momayez R. Biological and molecular characterization of avian influenza virus (H9N2) isolates from Iran. Acta Virol. 2006;50:163-8.
18. Xu KM, Li KS, Smith GJ, Li JW, Tai H, Zhang JX, et al. Evolution and molecular epidemiology of H9N2 influenza A viruses from quail in southern China, 2000 to 2005. J Virol. 2007;81:2635-45. http://dx.doi.org/10.1128/JVI.02316-06
19. Guo YJ, Krauss S, Senne DA, Mo IP, Lo KS, Xiong XP, et al. Characterization of the pathogenicity of members of the newly established H9N2 influenza virus lineages in Asia. Virology. 2000;267:279-88. http://dx.doi.org/10.1006/viro.1999.0115
20. Li KS, Xu KM, Peiris JS, Poon LL, Yu KZ, Yuen KY, et al. Characterization of H9 subtype influenza viruses from the ducks of southern China: a candidate for the next influenza pandemic in humans? J Virol. 2003;77:6988-94. http://dx.doi.org/10.1128/JVI.77.12.6988-6994.2003
21. Ahmed SS, Ersboll AK, Biswas PK, Christensen JP, Hannan AS, Toft N. Ecological determinants of highly pathogenic avian influenza (H5N1) outbreaks in Bangladesh. PLoS ONE. 2012;7:e33938. http://dx.doi.org/10.1371/journal.pone.0033938
22. International Centre for Diarrhoeal Disease Research, Bangladesh. Backyard poultry raising practices in Bangladesh. Health and Science Bulletin (ICDDR, B). 2012 [cited 2012 Nov 26]. http://www.icddrb. org/what-we-do/publications/cat_view/52-publications/10042-icddrb-periodicals/10048-health-and-science-bulletin-bangla-andenglish/ 14138-vol-10-no-3-english-2012/14144-backyard-poultryraising-practices-in-bangladesh-implications-for-risk-of-avianinfluenza-infection-in-humans
23. World Health Organization. Cumulative number of confirmed human cases of avian influenza A(H5N1) [cited 2012 Nov 26]. http://www.who.int/influenza/human_animal_interface/H5N1_ cumulative_table_archives/en/index.htmlExternal
24. Mondal SP, Tardif-Douglin D, Ryan-Silva R, Magnani R. Controlling highly pathogenic avian influenza, Bangladesh. Emerg Infect Dis. 2012;18:2083-5. http://dx.doi.org/10.3201/eid1812.120635
25. Dolberg F. Poultry sector country review: Bangladesh. Food and Agricultural Organization of the United Nations. 2009 [cited 2012 Nov 26]. ftp://ftp.fao.org/docrep/fao/011/ai319e/ai319e00.pdf
26. Negovetich NJ, Feeroz MM, Jones-Engel L, Walker D, Alam SM, Hasan K, et al. Live bird markets of Bangladesh: H9N2 viruses and the near absence of highly pathogenic H5N1 influenza. PLoS ONE. 2011;6:e19311. http://dx.doi.org/10.1371/journal. pone.0019311
27. Palmer DFDW, Coleman MT, Schild GC. Advanced laboratory techniques for influenza diagnosis. Immunology series no. 6. Atlanta: Centers for Disease Control, US Department of Health, Education and Welfare; 1975.
28. Guan Y, Peiris JS, Lipatov AS, Ellis TM, Dyrting KC, Krauss S, et al. Emergence of multiple genotypes of H5N1 avian influenza viruses in Hong Kong SAR. Proc Natl Acad Sci U S A. 2002;99:8950-5. http://dx.doi.org/10.1073/pnas.132268999
29. Hoffmann E, Stech J, Guan Y, Webster RG, Perez DR. Universal primer set for the full-length amplification of all influenza A viruses. Arch Virol. 2001;146:2275-89. http://dx.doi.org/10.1007/ s007050170002
30. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximumlikelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 2010;59:307-21. http://dx.doi.org/10.1093/sysbio/syq010
31. Gupta R, Jung E, Brunak S. Prediction of N-glycosylation sites in human proteins [cited 2012 Nov 26]. http://www.cbs.dtu.dk/services/ NetNGlyc/
32. Baigent SJ, McCauley JW. Influenza type A in humans, mammals and birds: determinants of virus virulence, host-range and interspecies transmission. Bioessays. 2003;25:657-71. http://dx.doi.org/ 10.1002/bies.10303
33. Wan H, Perez DR. Amino acid 226 in the hemagglutinin of H9N2 influenza viruses determines cell tropism and replication in human airway epithelial cells. J Virol. 2007;81:5181-91. http://dx.doi. org/10.1128/JVI.02827-06
34. Wan H, Sorrell EM, Song H, Hossain MJ, Ramirez-Nieto G, Monne I, et al. Replication and transmission of H9N2 influenza viruses in ferrets: evaluation of pandemic potential. PLoS ONE. 2008;3:e2923. http://dx.doi.org/10.1371/journal.pone.0002923
35. Matrosovich M, Zhou N, Kawaoka Y, Webster R. The surface glycoproteins of H5 influenza viruses isolated from humans, chickens, and wild aquatic birds have distinguishable properties. J Virol. 1999;73:1146-55.
36. Chen GW, Chang SC, Mok CK, Lo YL, Kung YN, Huang JH, et al. Genomic signatures of human versus avian influenza A viruses. Emerg Infect Dis. 2006;12:1353-60. http://dx.doi.org/10.3201/eid1209.060276
37. Jackson D, Hossain MJ, Hickman D, Perez DR, Lamb RA. A new influenza virus virulence determinant: the NS1 protein four C-terminal residues modulate pathogenicity. Proc Natl Acad Sci U S A. 2008;105:4381-6. http://dx.doi.org/10.1073/pnas.0800482105
38. Abbas MA, Spackman E, Swayne DE, Ahmed Z, Sarmento L, Siddique N, et al. Sequence and phylogenetic analysis of H7N3 avian influenza viruses isolated from poultry in Pakistan 1995-2004. Virol J. 2010;7:137. http://dx.doi.org/10.1186/1743-422X-7-137
39. Kageyama T, Fujisaki S, Takashita E, Xu H, Yamada S, Uchida Y, et al. Genetic analysis of novel avian A(H7N9) influenza viruses isolated from patients in China, February to April 2013. Euro Surveill. 2013;18:20453
40. Gao R, Cao B, Hu Y, Feng Z, Wang D, Hu W, et al. Human infection with a novel avian-origin influenza A (H7N9) virus. N Engl J Med. 2013;368:1888-97. http://dx.doi.org/10.1056/NEJMoa1304459