메뉴 건너뛰기




Volumn 41, Issue 12, 2013, Pages 6316-6331

Influence of genome-scale RNA structure disruption on the replication of murine norovirus - Similar replication kinetics in cell culture but attenuation of viral fitness in vivo

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; COCULTURE; CONTROLLED STUDY; GENE DISRUPTION; GENE FUNCTION; GENETIC ANALYSIS; IN VIVO STUDY; MACROPHAGE; NONHUMAN; NOROVIRUS; NUCLEOTIDE SEQUENCE; PERSISTENT VIRUS INFECTION; PHENOTYPE; PRIORITY JOURNAL; PROMOTER REGION; REPRODUCTIVE FITNESS; RNA SEQUENCE; RNA STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; UNINDEXED SEQUENCE; VIRUS ATTENUATION; VIRUS CULTURE; VIRUS REPLICATION;

EID: 84880220185     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt334     Document Type: Article
Times cited : (25)

References (57)
  • 1
    • 0029811544 scopus 로고    scopus 로고
    • RNA-protein interactions in regulation of picornavirus RNA translation
    • Belsham, G.J. and Sonenberg, N. (1996) RNA-protein interactions in regulation of picornavirus RNA translation. Microbiol. Rev., 60, 499-511.
    • (1996) Microbiol. Rev. , vol.60 , pp. 499-511
    • Belsham, G.J.1    Sonenberg, N.2
  • 3
    • 0036203278 scopus 로고    scopus 로고
    • The Brome mosaic virus subgenomic promoter hairpin is structurally similar to the iron-responsive element and functionally equivalent to the minus-strand core promoter stem-loop C
    • Joost Haasnoot, P.C., Olsthoorn, R.C. and Bol, J.F. (2002) The Brome mosaic virus subgenomic promoter hairpin is structurally similar to the iron-responsive element and functionally equivalent to the minus-strand core promoter stem-loop C. RNA, 8, 110-122.
    • (2002) RNA , vol.8 , pp. 110-122
    • Joost Haasnoot, P.C.1    Olsthoorn, R.C.2    Bol, J.F.3
  • 4
    • 0036776467 scopus 로고    scopus 로고
    • Identification and characterization of a cis-acting replication element (cre) adjacent to the internal ribosome entry site of foot-and-mouth disease virus
    • Mason, P.W., Bezborodova, S.V. and Henry, T.M. (2002) Identification and characterization of a cis-acting replication element (cre) adjacent to the internal ribosome entry site of foot-and-mouth disease virus. J. Virol., 76, 9686-9694.
    • (2002) J. Virol. , vol.76 , pp. 9686-9694
    • Mason, P.W.1    Bezborodova, S.V.2    Henry, T.M.3
  • 5
    • 0031426461 scopus 로고    scopus 로고
    • RNA signals in Entero-and Rhinovirus genome replication
    • Xiang, W., Paul, A.V. and Wimmer, E. (1997) RNA signals in Entero-and Rhinovirus genome replication. Semin. Virol., 8, 256-273.
    • (1997) Semin. Virol. , vol.8 , pp. 256-273
    • Xiang, W.1    Paul, A.V.2    Wimmer, E.3
  • 6
    • 0037143493 scopus 로고    scopus 로고
    • Multiple secondary structure rearrangements during HIV-1 RNA dimerization
    • Huthoff, H. and Berkhout, B. (2002) Multiple secondary structure rearrangements during HIV-1 RNA dimerization. Biochemistry, 41, 10439-10445.
    • (2002) Biochemistry , vol.41 , pp. 10439-10445
    • Huthoff, H.1    Berkhout, B.2
  • 7
    • 0002855593 scopus 로고
    • Cis-Acting genomic elements and trans-acting proteins involved in the assembly of RNA viruses
    • Schlesinger, S., Makino, S. and Linial, M.L. (1994) Cis-Acting genomic elements and trans-acting proteins involved in the assembly of RNA viruses. Semin. Virol., 5, 39-49.
    • (1994) Semin. Virol. , vol.5 , pp. 39-49
    • Schlesinger, S.1    Makino, S.2    Linial, M.L.3
  • 8
    • 4344619191 scopus 로고    scopus 로고
    • Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence
    • Simmonds, P., Tuplin, A. and Evans, D.J. (2004) Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: implications for virus evolution and host persistence. RNA, 10, 1337-1351.
    • (2004) RNA , vol.10 , pp. 1337-1351
    • Simmonds, P.1    Tuplin, A.2    Evans, D.J.3
  • 9
    • 56449093852 scopus 로고    scopus 로고
    • Bioinformatic and physical characterisation of genome-scale ordered RNA structure (GORS) in mammalian RNA viruses
    • Davis, M., Sagan, S., Pezacki, J., Evans, D.J. and Simmonds, P. (2008) Bioinformatic and physical characterisation of genome-scale ordered RNA structure (GORS) in mammalian RNA viruses. J. Virol., 82, 11824-11836.
    • (2008) J. Virol. , vol.82 , pp. 11824-11836
    • Davis, M.1    Sagan, S.2    Pezacki, J.3    Evans, D.J.4    Simmonds, P.5
  • 11
    • 0032796501 scopus 로고    scopus 로고
    • RNA secondary structure prediction using stochastic context-free grammars and evolutionary history
    • Knudsen, B. and Hein, J. (1999) RNA secondary structure prediction using stochastic context-free grammars and evolutionary history. Bioinformatics, 15, 446-454.
    • (1999) Bioinformatics , vol.15 , pp. 446-454
    • Knudsen, B.1    Hein, J.2
  • 12
    • 34547556305 scopus 로고    scopus 로고
    • The RNAz web server: Prediction of thermodynamically stable and evolutionarily conserved RNA structures
    • Gruber, A.R., Neubock, R., Hofacker, I.L. and Washietl, S. (2007) The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures. Nucleic Acids Res., 35, W335-W338.
    • (2007) Nucleic Acids Res. , vol.35
    • Gruber, A.R.1    Neubock, R.2    Hofacker, I.L.3    Washietl, S.4
  • 16
    • 43349101238 scopus 로고    scopus 로고
    • Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses
    • Simmonds, P., Kakasiliotis, I., Chaudhry, Y., Evans, D.J. and Goodfellow, I.G. (2008) Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses. Nucleic Acids Res., 36, 2530-2546.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 2530-2546
    • Simmonds, P.1    Kakasiliotis, I.2    Chaudhry, Y.3    Evans, D.J.4    Goodfellow, I.G.5
  • 17
    • 0037423838 scopus 로고    scopus 로고
    • STAT1-dependent innate immunity to a Norwalk-like virus
    • Karst, S.M., Wobus, C.E., Lay, M., Davidson, J. and Virgin, H.W. (2003) STAT1-dependent innate immunity to a Norwalk-like virus. Science, 299, 1575-1578.
    • (2003) Science , vol.299 , pp. 1575-1578
    • Karst, S.M.1    Wobus, C.E.2    Lay, M.3    Davidson, J.4    Virgin, H.W.5
  • 18
    • 34547557616 scopus 로고    scopus 로고
    • Recovery of genetically defined murine norovirus in tissue culture by using a fowlpox virus expressing T7 RNA polymerase
    • Chaudhry, Y., Skinner, M.A. and Goodfellow, I. (2007) Recovery of genetically defined murine norovirus in tissue culture by using a fowlpox virus expressing T7 RNA polymerase. J. Gen. Virol., 88, 2091-2100.
    • (2007) J. Gen. Virol. , vol.88 , pp. 2091-2100
    • Chaudhry, Y.1    Skinner, M.A.2    Goodfellow, I.3
  • 19
    • 84862686191 scopus 로고    scopus 로고
    • Development of a reverse-genetics system for murine norovirus 3: Long-term persistence occurs in the caecum and colon
    • Arias, A., Bailey, D., Chaudhry, Y. and Goodfellow, I. (2012) Development of a reverse-genetics system for murine norovirus 3: long-term persistence occurs in the caecum and colon. J. Gen. Virol., 93, 1432-1441.
    • (2012) J. Gen. Virol. , vol.93 , pp. 1432-1441
    • Arias, A.1    Bailey, D.2    Chaudhry, Y.3    Goodfellow, I.4
  • 20
    • 26944492149 scopus 로고    scopus 로고
    • Development of a microsphere-based serologic multiplexed fluorescent immunoassay and a reverse transcriptase PCR assay to detect murine norovirus 1 infection in mice
    • Hsu, C.C., Wobus, C.E., Steffen, E.K., Riley, L.K. and Livingston, R.S. (2005) Development of a microsphere-based serologic multiplexed fluorescent immunoassay and a reverse transcriptase PCR assay to detect murine norovirus 1 infection in mice. Clin. Diagn. Lab. Immunol., 12, 1145-1151.
    • (2005) Clin. Diagn. Lab. Immunol. , vol.12 , pp. 1145-1151
    • Hsu, C.C.1    Wobus, C.E.2    Steffen, E.K.3    Riley, L.K.4    Livingston, R.S.5
  • 21
    • 34548278958 scopus 로고    scopus 로고
    • Genetic diversity and recombination of murine noroviruses in immunocompromised mice
    • Muller, B., Klemm, U., Mas, M.A. and Schreier, E. (2007) Genetic diversity and recombination of murine noroviruses in immunocompromised mice. Arch. Virol., 152, 1709-1719.
    • (2007) Arch. Virol. , vol.152 , pp. 1709-1719
    • Muller, B.1    Klemm, U.2    Mas, M.A.3    Schreier, E.4
  • 25
    • 84855926027 scopus 로고    scopus 로고
    • Diversity of murine norovirus in wild-rodent populations: Species-specific associations suggest an ancient divergence
    • Smith, D.B., McFadden, N., Blundell, R.J., Meredith, A. and Simmonds, P. (2012) Diversity of murine norovirus in wild-rodent populations: species-specific associations suggest an ancient divergence. J. Gen. Virol., 93, 259-266.
    • (2012) J. Gen. Virol. , vol.93 , pp. 259-266
    • Smith, D.B.1    McFadden, N.2    Blundell, R.J.3    Meredith, A.4    Simmonds, P.5
  • 27
    • 84869091145 scopus 로고    scopus 로고
    • Molecular detection of murine noroviruses in laboratory and wild mice
    • Farkas, T., Fey, B., Keller, G., Martella, V. and Egyed, L. (2012) Molecular detection of murine noroviruses in laboratory and wild mice. Vet. Microbiol., 160, 463-467.
    • (2012) Vet. Microbiol. , vol.160 , pp. 463-467
    • Farkas, T.1    Fey, B.2    Keller, G.3    Martella, V.4    Egyed, L.5
  • 29
    • 0032888955 scopus 로고    scopus 로고
    • Generation of bovine respiratory syncytial virus (BRSV) from cDNA: BRSV NS2 is not essential for virus replication in tissue culture, and the human RSV leader region acts as a functional BRSV genome promoter
    • Buchholz, U.J., Finke, S. and Conzelmann, K.K. (1999) Generation of bovine respiratory syncytial virus (BRSV) from cDNA: BRSV NS2 is not essential for virus replication in tissue culture, and the human RSV leader region acts as a functional BRSV genome promoter. J. Virol., 73, 251-259.
    • (1999) J. Virol. , vol.73 , pp. 251-259
    • Buchholz, U.J.1    Finke, S.2    Conzelmann, K.K.3
  • 31
    • 84856017600 scopus 로고    scopus 로고
    • SSE: A nucleotide and amino acid sequence analysis platform
    • Simmonds, P. (2012) SSE: a nucleotide and amino acid sequence analysis platform. BMC Res. Notes, 5, 50.
    • (2012) BMC Res. Notes , vol.5 , pp. 50
    • Simmonds, P.1
  • 32
    • 0034120158 scopus 로고    scopus 로고
    • Organization and expression of calicivirus genes
    • Clarke, I.N. and Lambden, P.R. (2000) Organization and expression of calicivirus genes. J. Infect. Dis., 181(Suppl. 2), S309-S316.
    • (2000) J. Infect. Dis. , vol.181 , Issue.SUPPL. 2
    • Clarke, I.N.1    Lambden, P.R.2
  • 34
    • 77649118556 scopus 로고    scopus 로고
    • Functional analysis of RNA structures present at the 3' extremity of the murine norovirus genome: The variable polypyrimidine tract plays a role in viral virulence
    • Bailey, D., Karakasiliotis, I., Vashist, S., Chung, L.M., Reese, J., McFadden, N., Benson, A., Yarovinsky, F., Simmonds, P. and Goodfellow, I. (2010) Functional analysis of RNA structures present at the 3' extremity of the murine norovirus genome: the variable polypyrimidine tract plays a role in viral virulence. J. Virol., 84, 2859-2870.
    • (2010) J. Virol. , vol.84 , pp. 2859-2870
    • Bailey, D.1    Karakasiliotis, I.2    Vashist, S.3    Chung, L.M.4    Reese, J.5    McFadden, N.6    Benson, A.7    Yarovinsky, F.8    Simmonds, P.9    Goodfellow, I.10
  • 35
    • 80053904402 scopus 로고    scopus 로고
    • ISG15 facilitates cellular antiviral response to dengue and west nile virus infection in vitro
    • Dai, J., Pan, W. and Wang, P. (2011) ISG15 facilitates cellular antiviral response to dengue and west nile virus infection in vitro. Virol. J., 8, 468.
    • (2011) Virol. J. , vol.8 , pp. 468
    • Dai, J.1    Pan, W.2    Wang, P.3
  • 36
    • 55549115344 scopus 로고    scopus 로고
    • Novel characteristics of the function and induction of murine p56 family proteins
    • Fensterl, V., White, C.L., Yamashita, M. and Sen, G.C. (2008) Novel characteristics of the function and induction of murine p56 family proteins. J. Virol., 82, 11045-11053.
    • (2008) J. Virol. , vol.82 , pp. 11045-11053
    • Fensterl, V.1    White, C.L.2    Yamashita, M.3    Sen, G.C.4
  • 37
    • 80053976693 scopus 로고    scopus 로고
    • Internal control genes for quantitative RT-PCR expression analysis in mouse osteoblasts, osteoclasts and macrophages
    • Stephens, A.S., Stephens, S.R. and Morrison, N.A. (2011) Internal control genes for quantitative RT-PCR expression analysis in mouse osteoblasts, osteoclasts and macrophages. BMC Res. Notes, 4, 410-414.
    • (2011) BMC Res. Notes , vol.4 , pp. 410-414
    • Stephens, A.S.1    Stephens, S.R.2    Morrison, N.A.3
  • 38
    • 0036791538 scopus 로고    scopus 로고
    • HCV RNA-dependent RNA polymerase as a target for antiviral development
    • Walker, M.P. and Hong, Z. (2002) HCV RNA-dependent RNA polymerase as a target for antiviral development. Curr. Opin. Pharmacol., 2, 534-540.
    • (2002) Curr. Opin. Pharmacol. , vol.2 , pp. 534-540
    • Walker, M.P.1    Hong, Z.2
  • 39
    • 0033765362 scopus 로고    scopus 로고
    • Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs
    • Rivas, E. and Eddy, S.R. (2000) Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. Bioinformatics, 16, 583-605.
    • (2000) Bioinformatics , vol.16 , pp. 583-605
    • Rivas, E.1    Eddy, S.R.2
  • 40
    • 0033572893 scopus 로고    scopus 로고
    • No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution
    • Workman, C. and Krogh, A. (1999) No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution. Nucleic Acids Res., 27, 4816-4822.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 4816-4822
    • Workman, C.1    Krogh, A.2
  • 42
    • 0030726485 scopus 로고    scopus 로고
    • Dinucleotide and stop codon frequencies in single-stranded RNA viruses
    • Rima, B.K. and McFerran, N.V. (1997) Dinucleotide and stop codon frequencies in single-stranded RNA viruses. J. Gen. Virol., 78, 2859-2870.
    • (1997) J. Gen. Virol. , vol.78 , pp. 2859-2870
    • Rima, B.K.1    McFerran, N.V.2
  • 43
    • 33745301496 scopus 로고    scopus 로고
    • VPg of murine norovirus binds translation initiation factors in infected cells
    • Daughenbaugh, K.F., Wobus, C.E. and Hardy, M.E. (2006) VPg of murine norovirus binds translation initiation factors in infected cells. Virol. J., 3, 33.
    • (2006) Virol. J. , vol.3 , pp. 33
    • Daughenbaugh, K.F.1    Wobus, C.E.2    Hardy, M.E.3
  • 45
    • 77949899515 scopus 로고    scopus 로고
    • Viral induction of the zinc finger antiviral protein is IRF3-dependent but NF-kappaB-independent
    • Wang, N., Dong, Q., Li, J., Jangra, R.K., Fan, M., Brasier, A.R., Lemon, S.M., Pfeffer, L.M. and Li, K. (2010) Viral induction of the zinc finger antiviral protein is IRF3-dependent but NF-kappaB-independent. J. Biol. Chem., 285, 6080-6090.
    • (2010) J. Biol. Chem. , vol.285 , pp. 6080-6090
    • Wang, N.1    Dong, Q.2    Li, J.3    Jangra, R.K.4    Fan, M.5    Brasier, A.R.6    Lemon, S.M.7    Pfeffer, L.M.8    Li, K.9
  • 46
    • 24944509220 scopus 로고    scopus 로고
    • T cells and viral persistence: Lessons from diverse infections
    • Klenerman, P. and Hill, A. (2005) T cells and viral persistence: lessons from diverse infections. Nat. Immunol., 6, 873-879.
    • (2005) Nat. Immunol. , vol.6 , pp. 873-879
    • Klenerman, P.1    Hill, A.2
  • 47
    • 84859432807 scopus 로고    scopus 로고
    • Failure of innate and adaptive immune responses in controlling hepatitis C virus infection
    • Thimme, R., Binder, M. and Bartenschlager, R. (2012) Failure of innate and adaptive immune responses in controlling hepatitis C virus infection. FEMS Microbiol. Rev., 36, 663-683.
    • (2012) FEMS Microbiol. Rev. , vol.36 , pp. 663-683
    • Thimme, R.1    Binder, M.2    Bartenschlager, R.3
  • 48
    • 0029985145 scopus 로고    scopus 로고
    • Evolutionary reconstruction of a hairpin deleted from the genome of an RNA virus
    • Olsthoorn, R.C. and van Duin, J. (1996) Evolutionary reconstruction of a hairpin deleted from the genome of an RNA virus. Proc. Natl Acad. Sci. USA, 93, 12256-12261.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 12256-12261
    • Olsthoorn, R.C.1    Van Duin, J.2
  • 49
    • 0028201045 scopus 로고
    • Leeway and constraints in the forced evolution of a regulatory RNA helix
    • Olsthoorn, R.C., Licis, N. and van Duin, J. (1994) Leeway and constraints in the forced evolution of a regulatory RNA helix. EMBO J., 13, 2660-2668.
    • (1994) EMBO J. , vol.13 , pp. 2660-2668
    • Olsthoorn, R.C.1    Licis, N.2    Van Duin, J.3
  • 50
    • 0030842451 scopus 로고    scopus 로고
    • Forced evolution of a regulatory RNA helix in the HIV-1 genome
    • Berkhout, B., Klaver, B. and Das, A.T. (1997) Forced evolution of a regulatory RNA helix in the HIV-1 genome. Nucleic Acids Res., 25, 940-947.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 940-947
    • Berkhout, B.1    Klaver, B.2    Das, A.T.3
  • 51
    • 0028304885 scopus 로고
    • Evolution of a disrupted TAR RNA hairpin structure in the HIV-1 virus
    • Klaver, B. and Berkhout, B. (1994) Evolution of a disrupted TAR RNA hairpin structure in the HIV-1 virus. EMBO J., 13, 2650-2659.
    • (1994) EMBO J. , vol.13 , pp. 2650-2659
    • Klaver, B.1    Berkhout, B.2
  • 52
    • 0029117061 scopus 로고
    • Structure, function, and evolution of adenovirus virus-associated RNAs
    • Mathews, M.B. (1995) Structure, function, and evolution of adenovirus virus-associated RNAs. Curr. Top. Microbiol. Immunol., 199, 173-187.
    • (1995) Curr. Top. Microbiol. Immunol. , vol.199 , pp. 173-187
    • Mathews, M.B.1
  • 53
    • 0027487288 scopus 로고
    • Comparative analysis of the regulation of the interferon-inducible protein kinase PKR by Epstein-Barr virus RNAs EBER-1 and EBER-2 and adenovirus VAI RNA
    • Sharp, T.V., Schwemmle, M., Jeffrey, I., Laing, K., Mellor, H., Proud, C.G., Hilse, K. and Clemens, M.J. (1993) Comparative analysis of the regulation of the interferon-inducible protein kinase PKR by Epstein-Barr virus RNAs EBER-1 and EBER-2 and adenovirus VAI RNA. Nucleic Acids Res., 21, 4483-4490.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4483-4490
    • Sharp, T.V.1    Schwemmle, M.2    Jeffrey, I.3    Laing, K.4    Mellor, H.5    Proud, C.G.6    Hilse, K.7    Clemens, M.J.8
  • 54
    • 55249110382 scopus 로고    scopus 로고
    • Progress in understanding norovirus epidemiology
    • Koopmans, M. (2008) Progress in understanding norovirus epidemiology. Curr. Opin. Infect. Dis., 21, 544-552.
    • (2008) Curr. Opin. Infect. Dis. , vol.21 , pp. 544-552
    • Koopmans, M.1
  • 56
    • 0034691154 scopus 로고    scopus 로고
    • Acute and persistent viral life strategies and their relationship to emerging diseases
    • Villarreal, L.P., Defilippis, V.R. and Gottlieb, K.A. (2000) Acute and persistent viral life strategies and their relationship to emerging diseases. Virology, 272, 1-6.
    • (2000) Virology , vol.272 , pp. 1-6
    • Villarreal, L.P.1    Defilippis, V.R.2    Gottlieb, K.A.3
  • 57
    • 81755165762 scopus 로고    scopus 로고
    • Evaluating the evidence for virus/host co-evolution
    • Sharp, P.M. and Simmonds, P. (2011) Evaluating the evidence for virus/host co-evolution. Curr. Opin. Virol., 1, 436-441.
    • (2011) Curr. Opin. Virol. , vol.1 , pp. 436-441
    • Sharp, P.M.1    Simmonds, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.