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Volumn 28, Issue 19, 2014, Pages 2163-2174

Drosophila TRF2 is a preferential core promoter regulator

Author keywords

Core promoter; DNA binding; DPE; RNA polymerase II transcription; TRF2

Indexed keywords

COMPLEMENTARY DNA; ISOPROTEIN; REGULATOR PROTEIN; RNA POLYMERASE II; TATA BINDING PROTEIN; TATA BINDING PROTEIN RELATED FACTOR; TATA BOX BINDING PROTEIN RELATED FACTOR 2; UNCLASSIFIED DRUG; DROSOPHILA PROTEIN; PROTEIN BINDING; TELOMERIC REPEAT BINDING FACTOR 2; TRF2 PROTEIN, DROSOPHILA;

EID: 84907494393     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.245670.114     Document Type: Article
Times cited : (38)

References (54)
  • 1
    • 80052906171 scopus 로고    scopus 로고
    • TBP-related factors: A paradigm of diversity in transcription initiation
    • Akhtar W., Veenstra GJ. 2011. TBP-related factors: a paradigm of diversity in transcription initiation. Cell Biosci. 1: 23.
    • (2011) Cell Biosci. , vol.1 , pp. 23
    • Akhtar, W.1    Veenstra, G.J.2
  • 2
    • 0029892829 scopus 로고    scopus 로고
    • Purification of the Drosophila RNA polymerase II general transcription factors
    • Austin R.J., Biggin MD. 1996. Purification of the Drosophila RNA polymerase II general transcription factors. Proc Natl Acad Sci 93: 5788-5792.
    • (1996) Proc Natl Acad Sci , vol.93 , pp. 5788-5792
    • Austin, R.J.1    Biggin, M.D.2
  • 4
    • 36448957153 scopus 로고    scopus 로고
    • dTrf2 is required for transcriptional and developmental responses to ecdysone during Drosophila metamorphosis
    • Bashirullah A., Lam G, Yin VP, Thummel CS. 2007. dTrf2 is required for transcriptional and developmental responses to ecdysone during Drosophila metamorphosis. Dev Dyn 236: 3173-3179.
    • (2007) Dev Dyn , vol.236 , pp. 3173-3179
    • Bashirullah, A.1    Lam, G.2    Yin, V.P.3    Thummel, C.S.4
  • 5
    • 0035477093 scopus 로고    scopus 로고
    • Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs
    • Butler J.E.F., Kadonaga JT. 2001. Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs. Genes Dev 15: 2515-2519.
    • (2001) Genes Dev , vol.15 , pp. 2515-2519
    • Butler, J.E.F.1    Kadonaga, J.T.2
  • 6
    • 0037108159 scopus 로고    scopus 로고
    • The RNA polymerase II core promoter: A key component in the regulation of gene expression
    • Butler J.E.F., Kadonaga JT. 2002. The RNA polymerase II core promoter: a key component in the regulation of gene expression. Genes Dev 16: 2583-2592.
    • (2002) Genes Dev , vol.16 , pp. 2583-2592
    • Butler, J.E.F.1    Kadonaga, J.T.2
  • 8
    • 0033637859 scopus 로고    scopus 로고
    • TBP-like factor is required for embryonic RNA polymerase II transcription in C. elegans
    • Dantonel J.C., Quintin S, Lakatos L, Labouesse M, Tora L. 2000. TBP-like factor is required for embryonic RNA polymerase II transcription in C. elegans. Mol Cell 6: 715-722.
    • (2000) Mol Cell , vol.6 , pp. 715-722
    • Dantonel, J.C.1    Quintin, S.2    Lakatos, L.3    Labouesse, M.4    Tora, L.5
  • 9
    • 0024947630 scopus 로고
    • The caudal gene product is a direct activator of fushi tarazu transcription during Drosophila embryogenesis
    • Dearolf C.R., Topol J, Parker CS. 1989. The caudal gene product is a direct activator of fushi tarazu transcription during Drosophila embryogenesis. Nature 341: 340-343.
    • (1989) Nature , vol.341 , pp. 340-343
    • Dearolf, C.R.1    Topol, J.2    Parker, C.S.3
  • 10
    • 34648825451 scopus 로고    scopus 로고
    • TFIIB and the regulation of transcription by RNA polymerase II
    • Deng W., Roberts SG. 2007. TFIIB and the regulation of transcription by RNA polymerase II. Chromosoma 116: 417-429.
    • (2007) Chromosoma , vol.116 , pp. 417-429
    • Deng, W.1    Roberts, S.G.2
  • 11
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng J.K., McCormack AL, Yates JR. 1994. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 5: 976-989.
    • (1994) J Am Soc Mass Spectrom , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 12
    • 77956654773 scopus 로고    scopus 로고
    • De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis
    • Fordyce P.M., Gerber D, Tran D, Zheng J, Li H, DeRisi JL, Quake SR. 2010. De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. Nat Biotechnol 28: 970-975.
    • (2010) Nat Biotechnol , vol.28 , pp. 970-975
    • Fordyce, P.M.1    Gerber, D.2    Tran, D.3    Zheng, J.4    Li, H.5    DeRisi, J.L.6    Quake, S.R.7
  • 13
    • 84868288217 scopus 로고    scopus 로고
    • Highthroughput protein expression generator using a microfluidic platform
    • Glick Y., Avrahami D, Michaely E, Gerber D. 2012. Highthroughput protein expression generator using a microfluidic platform. J Vis Exp doi: 10.3791/3849.
    • (2012) J Vis Exp
    • Glick, Y.1    Avrahami, D.2    Michaely, E.3    Gerber, D.4
  • 14
    • 0028352861 scopus 로고
    • Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II
    • Goodrich J.A., Tjian R. 1994. Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II. Cell 77: 145-156.
    • (1994) Cell , vol.77 , pp. 145-156
    • Goodrich, J.A.1    Tjian, R.2
  • 15
    • 77954763022 scopus 로고    scopus 로고
    • Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation
    • Goodrich J.A., Tjian R. 2010. Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation. Nat Rev Genet 11: 549-558.
    • (2010) Nat Rev Genet , vol.11 , pp. 549-558
    • Goodrich, J.A.1    Tjian, R.2
  • 16
    • 33847298964 scopus 로고    scopus 로고
    • The gateway to transcription: Identifying, characterizing and understanding promoters in the eukaryotic genome
    • Heintzman N.D., Ren B. 2007. The gateway to transcription: identifying, characterizing and understanding promoters in the eukaryotic genome. Cell Mol Life Sci 64: 386-400.
    • (2007) Cell Mol Life Sci , vol.64 , pp. 386-400
    • Heintzman, N.D.1    Ren, B.2
  • 17
    • 0037191755 scopus 로고    scopus 로고
    • TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila
    • Hochheimer A., Zhou S, Zheng S, Holmes MC, Tjian R. 2002. TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila. Nature 420: 439-445.
    • (2002) Nature , vol.420 , pp. 439-445
    • Hochheimer, A.1    Zhou, S.2    Zheng, S.3    Holmes, M.C.4    Tjian, R.5
  • 18
    • 0017404914 scopus 로고
    • Purification using polyethylenimine precipitation and low molecular weight subunit analyses of calf thymus and wheat germ DNA-dependent RNA polymerase II
    • Hodo H.G. 3rd, Blatti SP. 1977. Purification using polyethylenimine precipitation and low molecular weight subunit analyses of calf thymus and wheat germ DNA-dependent RNA polymerase II. Biochemistry 16: 2334-2343.
    • (1977) Biochemistry , vol.16 , pp. 2334-2343
    • Hodo, H.G.1    Blatti, S.P.2
  • 19
    • 51149085210 scopus 로고    scopus 로고
    • TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription
    • Hsu J.Y., Juven-Gershon T, Marr MT II, Wright KJ, Tjian R, Kadonaga J.T. 2008. TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription. Genes Dev 22: 2353-2358.
    • (2008) Genes Dev , vol.22 , pp. 2353-2358
    • Hsu, J.Y.1    Juven-Gershon, T.2    Marr, M.T.3    Wright, K.J.4    Tjian, R.5    Kadonaga, J.T.6
  • 20
    • 36249011467 scopus 로고    scopus 로고
    • Transcription of histone gene cluster by differential corepromoter factors
    • Isogai Y., Keles S, Prestel M, Hochheimer A, Tjian R. 2007. Transcription of histone gene cluster by differential corepromoter factors. Genes Dev 21: 2936-2949.
    • (2007) Genes Dev , vol.21 , pp. 2936-2949
    • Isogai, Y.1    Keles, S.2    Prestel, M.3    Hochheimer, A.4    Tjian, R.5
  • 21
    • 77149174487 scopus 로고    scopus 로고
    • Regulation of gene expression via the core promoter and the basal transcriptional machinery
    • Juven-Gershon T., Kadonaga JT. 2010. Regulation of gene expression via the core promoter and the basal transcriptional machinery. Dev Biol 339: 225-229.
    • (2010) Dev Biol , vol.339 , pp. 225-229
    • Juven-Gershon, T.1    Kadonaga, J.T.2
  • 22
    • 33750345805 scopus 로고    scopus 로고
    • Rational design of a super core promoter that enhances gene expression
    • Juven-Gershon T., Cheng S, Kadonaga JT. 2006. Rational design of a super core promoter that enhances gene expression. Nat Methods 3: 917-922.
    • (2006) Nat Methods , vol.3 , pp. 917-922
    • Juven-Gershon, T.1    Cheng, S.2    Kadonaga, J.T.3
  • 23
    • 54349103510 scopus 로고    scopus 로고
    • Caudal, a key developmental regulator, is a DPE-specific transcriptional factor
    • Juven-Gershon T., Hsu JY, Kadonaga JT. 2008a. Caudal, a key developmental regulator, is a DPE-specific transcriptional factor. Genes Dev 22: 2823-2830.
    • (2008) Genes Dev , vol.22 , pp. 2823-2830
    • Juven-Gershon, T.1    Hsu, J.Y.2    Kadonaga, J.T.3
  • 25
    • 84858444088 scopus 로고    scopus 로고
    • Perspectives on the RNA polymerase II core promoter
    • Kadonaga J.T. 2012. Perspectives on the RNA polymerase II core promoter. Wiley Interdiscip Rev Dev Biol 1: 40-51.
    • (2012) Wiley Interdiscip Rev Dev Biol , vol.1 , pp. 40-51
    • Kadonaga, J.T.1
  • 26
    • 0033634868 scopus 로고    scopus 로고
    • The TBP-like factor CeTLF is required to activate RNA polymerase II transcription during C. elegans embryogenesis
    • Kaltenbach L., Horner MA, Rothman JH, Mango SE. 2000. The TBP-like factor CeTLF is required to activate RNA polymerase II transcription during C. elegans embryogenesis. Mol Cell 6: 705-713.
    • (2000) Mol Cell , vol.6 , pp. 705-713
    • Kaltenbach, L.1    Horner, M.A.2    Rothman, J.H.3    Mango, S.E.4
  • 28
    • 0034081817 scopus 로고    scopus 로고
    • The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters
    • Kutach A.K., Kadonaga JT. 2000. The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters. Mol Cell Biol 20: 4754-4764.
    • (2000) Mol Cell Biol , vol.20 , pp. 4754-4764
    • Kutach, A.K.1    Kadonaga, J.T.2
  • 29
    • 84858440747 scopus 로고    scopus 로고
    • Metazoan promoters: Emerging characteristics and insights into transcriptional regulation
    • Lenhard B., Sandelin A, Carninci P. 2012. Metazoan promoters: emerging characteristics and insights into transcriptional regulation. Nat Rev Genet 13: 233-245.
    • (2012) Nat Rev Genet , vol.13 , pp. 233-245
    • Lenhard, B.1    Sandelin, A.2    Carninci, P.3
  • 30
    • 18944366286 scopus 로고    scopus 로고
    • Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator
    • Lewis B.A., Sims RJ 3rd, Lane WS, Reinberg D. 2005. Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator. Mol Cell 18: 471-481.
    • (2005) Mol Cell , vol.18 , pp. 471-481
    • Lewis, B.A.1    Sims, R.J.2    Lane, W.S.3    Reinberg, D.4
  • 31
    • 3042784063 scopus 로고    scopus 로고
    • The MTE, a new core promoter element for transcription by RNA polymerase II
    • Lim C.Y., Santoso B, Boulay T, Dong E, Ohler U, Kadonaga JT. 2004. The MTE, a new core promoter element for transcription by RNA polymerase II. Genes Dev 18: 1606-1617.
    • (2004) Genes Dev , vol.18 , pp. 1606-1617
    • Lim, C.Y.1    Santoso, B.2    Boulay, T.3    Dong, E.4    Ohler, U.5    Kadonaga, J.T.6
  • 32
    • 33846467150 scopus 로고    scopus 로고
    • A systems approach to measuring the binding energy landscapes of transcription factors
    • Maerkl S.J., Quake SR. 2007. A systems approach to measuring the binding energy landscapes of transcription factors. Science 315: 233-237.
    • (2007) Science , vol.315 , pp. 233-237
    • Maerkl, S.J.1    Quake, S.R.2
  • 33
    • 0035265970 scopus 로고    scopus 로고
    • Late arrest of spermiogenesis and germ cell apoptosis in mice lacking the TBP-like TLF/TRF2 gene
    • Martianov I., Fimia GM, Dierich A, Parvinen M, Sassone-Corsi P, Davidson I. 2001. Late arrest of spermiogenesis and germ cell apoptosis in mice lacking the TBP-like TLF/TRF2 gene. Mol Cell 7: 509-515.
    • (2001) Mol Cell , vol.7 , pp. 509-515
    • Martianov, I.1    Fimia, G.M.2    Dierich, A.3    Parvinen, M.4    Sassone-Corsi, P.5    Davidson, I.6
  • 34
    • 0032722208 scopus 로고    scopus 로고
    • A human TATA binding protein-related protein with altered DNA binding specificity inhibits transcription from multiple promoters and activators
    • Moore P.A., Ozer J, Salunek M, Jan G, Zerby D, Campbell S, Lieberman P.M. 1999. A human TATA binding protein-related protein with altered DNA binding specificity inhibits transcription from multiple promoters and activators. Mol Cell Biol 19: 7610-7620.
    • (1999) Mol Cell Biol , vol.19 , pp. 7610-7620
    • Moore, P.A.1    Ozer, J.2    Salunek, M.3    Jan, G.4    Zerby, D.5    Campbell, S.6    Lieberman, P.M.7
  • 35
    • 34447522202 scopus 로고    scopus 로고
    • New problems in RNA polymerase II transcription initiation: Matching the diversity of core promoters with a variety of promoter recognition factors
    • Muller F., Demeny MA, Tora L. 2007. New problems in RNA polymerase II transcription initiation: matching the diversity of core promoters with a variety of promoter recognition factors. J Biol Chem 282: 14685-14689.
    • (2007) J Biol Chem , vol.282 , pp. 14685-14689
    • Muller, F.1    Demeny, M.A.2    Tora, L.3
  • 36
    • 0032519586 scopus 로고    scopus 로고
    • Different core promoters possess distinct regulatory activities in the Drosophila embryo
    • Ohtsuki S., Levine M, Cai HN. 1998. Different core promoters possess distinct regulatory activities in the Drosophila embryo. Genes Dev 12: 547-556.
    • (1998) Genes Dev , vol.12 , pp. 547-556
    • Ohtsuki, S.1    Levine, M.2    Cai, H.N.3
  • 37
    • 0033608978 scopus 로고    scopus 로고
    • TATA boxbinding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family
    • Rabenstein M.D., Zhou S, Lis JT, Tjian R. 1999. TATA boxbinding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family. Proc Natl Acad Sci 96: 4791-4796.
    • (1999) Proc Natl Acad Sci , vol.96 , pp. 4791-4796
    • Rabenstein, M.D.1    Zhou, S.2    Lis, J.T.3    Tjian, R.4
  • 38
    • 36248971192 scopus 로고    scopus 로고
    • On a roll for new TRF targets
    • Reina J.H., Hernandez N. 2007. On a roll for new TRF targets. Genes Dev 21: 2855-2860.
    • (2007) Genes Dev , vol.21 , pp. 2855-2860
    • Reina, J.H.1    Hernandez, N.2
  • 39
    • 32244435093 scopus 로고    scopus 로고
    • Reconstitution of chromatin transcription with purified components reveals a chromatinspecific repressive activity of p300
    • Santoso B., Kadonaga JT. 2006. Reconstitution of chromatin transcription with purified components reveals a chromatinspecific repressive activity of p300. Nat Struct Mol Biol 13: 131-139.
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 131-139
    • Santoso, B.1    Kadonaga, J.T.2
  • 40
    • 0035477896 scopus 로고    scopus 로고
    • Core promoters: Active contributors to combinatorial gene regulation
    • Smale S.T. 2001. Core promoters: active contributors to combinatorial gene regulation. Genes Dev 15: 2503-2508.
    • (2001) Genes Dev , vol.15 , pp. 2503-2508
    • Smale, S.T.1
  • 41
    • 0043269205 scopus 로고    scopus 로고
    • The RNA polymerase II core promoter
    • Smale S.T., Kadonaga JT. 2003. The RNA polymerase II core promoter. Annu Rev Biochem 72: 449-479.
    • (2003) Annu Rev Biochem , vol.72 , pp. 449-479
    • Smale, S.T.1    Kadonaga, J.T.2
  • 42
    • 0023804820 scopus 로고
    • In vitro transcription of the Drosophila engrailed gene
    • Soeller W.C., Poole SJ, Kornberg T. 1988. In vitro transcription of the Drosophila engrailed gene. Genes Dev 2: 68-81.
    • (1988) Genes Dev , vol.2 , pp. 68-81
    • Soeller, W.C.1    Poole, S.J.2    Kornberg, T.3
  • 44
    • 33747881750 scopus 로고    scopus 로고
    • The general transcription machinery and general cofactors
    • Thomas M.C., Chiang CM. 2006. The general transcription machinery and general cofactors. Crit Rev Biochem Mol Biol 41: 105-178.
    • (2006) Crit Rev Biochem Mol Biol , vol.41 , pp. 105-178
    • Thomas, M.C.1    Chiang, C.M.2
  • 45
    • 35748958099 scopus 로고    scopus 로고
    • TBP homologues in embryo transcription: Who does what?
    • Torres-Padilla M.E., Tora L. 2007. TBP homologues in embryo transcription: who does what? EMBO Rep 8: 1016-1018.
    • (2007) EMBO Rep , vol.8 , pp. 1016-1018
    • Torres-Padilla, M.E.1    Tora, L.2
  • 47
    • 0034704187 scopus 로고    scopus 로고
    • Distinct roles for TBP and TBP-like factor in early embryonic gene transcription in Xenopus
    • Veenstra G.J., Weeks DL, Wolffe AP. 2000. Distinct roles for TBP and TBP-like factor in early embryonic gene transcription in Xenopus. Science 290: 2312-2315.
    • (2000) Science , vol.290 , pp. 2312-2315
    • Veenstra, G.J.1    Weeks, D.L.2    Wolffe, A.P.3
  • 48
    • 0025675618 scopus 로고
    • Fractionation of the general RNA polymerase II transcription factors from Drosophila embryos
    • Wampler S.L., Tyree CM, Kadonaga JT. 1990. Fractionation of the general RNA polymerase II transcription factors from Drosophila embryos. J Biol Chem 265: 21223-21231.
    • (1990) J Biol Chem , vol.265 , pp. 21223-21231
    • Wampler, S.L.1    Tyree, C.M.2    Kadonaga, J.T.3
  • 50
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn M.P., Wolters D, Yates JR 3rd. 2001. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 19: 242-247.
    • (2001) Nat Biotechnol , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates, J.R.3
  • 51
    • 0034602192 scopus 로고    scopus 로고
    • A basal transcription factor that activates or represses transcription
    • Willy P.J., Kobayashi R, Kadonaga JT. 2000. A basal transcription factor that activates or represses transcription. Science 290: 982-984.
    • (2000) Science , vol.290 , pp. 982-984
    • Willy, P.J.1    Kobayashi, R.2    Kadonaga, J.T.3
  • 52
    • 84899426458 scopus 로고    scopus 로고
    • Core promoter functions in the regulation of gene expression of Drosophila dorsal target genes
    • Zehavi Y., Kuznetsov O, Ovadia-Shochat A, Juven-Gershon T. 2014. Core promoter functions in the regulation of gene expression of Drosophila dorsal target genes. J Biol Chem 289: 11993-12004.
    • (2014) J Biol Chem , vol.289 , pp. 11993-12004
    • Zehavi, Y.1    Kuznetsov, O.2    Ovadia-Shochat, A.3    Juven-Gershon, T.4


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