TBP-related factors: A paradigm of diversity in transcription initiation

Cell and Bioscience

Volumn 1, Issue 1, 2011, Pages

  Akhtar, Waseem ^a   Veenstra, Gert Jan C ^a  

^a RADBOUD UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTA; VERTEBRATA;

EID: 80052906171     PISSN: None     EISSN: 20453701     Source Type: Journal    
DOI: 10.1186/2045-3701-1-23     Document Type: Review

References (102)

1. Juven-Gershon T, Kadonaga JT. Regulation of gene expression via the core promoter and the basal transcriptional machinery. Dev Biol 339(2):225-229.
2. Thomas MC, Chiang CM. The general transcription machinery and general cofactors. Crit Rev Biochem Mol Biol 2006, 41(3):105-178. 10.1080/10409230600648736, 16858867.
3. Muller F, Tora L. The multicoloured world of promoter recognition complexes. EMBO J 2004, 23(1):2-8. 10.1038/sj.emboj.7600027, 1271665, 14685269.
4. Hernandez N. TBP, a universal eukaryotic transcription factor?. Genes Dev 1993, 7(7B):1291-1308. 10.1101/gad.7.7b.1291, 8330735.
5. Burley SK. The TATA box binding protein. Curr Opin Struct Biol 1996, 6(1):69-75. 10.1016/S0959-440X(96)80097-2, 8696975.
6. Nikolov DB, Hu SH, Lin J, Gasch A, Hoffmann A, Horikoshi M, Chua NH, Roeder RG, Burley SK. Crystal structure of TFIID TATA-box binding protein. Nature 1992, 360(6399):40-46. 10.1038/360040a0, 1436073.
7. Chasman DI, Flaherty KM, Sharp PA, Kornberg RD. Crystal structure of yeast TATA-binding protein and model for interaction with DNA. Proc Natl Acad Sci USA 1993, 90(17):8174-8178. 10.1073/pnas.90.17.8174, 47311, 8367480.
8. Kim JL, Nikolov DB, Burley SK. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 1993, 365(6446):520-527. 10.1038/365520a0, 8413605.
9. Kim Y, Geiger JH, Hahn S, Sigler PB. Crystal structure of a yeast TBP/TATA-box complex. Nature 1993, 365(6446):512-520. 10.1038/365512a0, 8413604.
10. Kim JL, Burley SK. 1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG. Nat Struct Biol 1994, 1(9):638-653. 10.1038/nsb0994-638, 7634103.
11. Nikolov DB, Burley SK. 2.1 A resolution refined structure of a TATA box-binding protein (TBP). Nat Struct Biol 1994, 1(9):621-637. 10.1038/nsb0994-621, 7634102.
12. Nikolov DB, Chen H, Halay ED, Hoffman A, Roeder RG, Burley SK. Crystal structure of a human TATA box-binding protein/TATA element complex. Proc Natl Acad Sci USA 1996, 93(10):4862-4867. 10.1073/pnas.93.10.4862, 39370, 8643494.
13. Juo ZS, Chiu TK, Leiberman PM, Baikalov I, Berk AJ, Dickerson RE. How proteins recognize the TATA box. J Mol Biol 1996, 261(2):239-254. 10.1006/jmbi.1996.0456, 8757291.
14. Zhao X, Herr W. A regulated two-step mechanism of TBP binding to DNA: a solvent-exposed surface of TBP inhibits TATA box recognition. Cell 2002, 108(5):615-627. 10.1016/S0092-8674(02)00648-7, 11893333.
15. Drygin D, Rice WG, Grummt I. The RNA polymerase I transcription machinery: an emerging target for the treatment of cancer. Annu Rev Pharmacol Toxicol 50:131-156.
16. Teichmann M, Dieci G, Pascali C, Boldina G. General transcription factors and subunits of RNA polymerase III: Paralogs for promoter- and cell type-specific transcription in multicellular eukaryotes. Transcr 1(3):130-135.
17. Ma B, Hernandez N. Redundant cooperative interactions for assembly of a human U6 transcription initiation complex. Mol Cell Biol 2002, 22(22):8067-8078. 10.1128/MCB.22.22.8067-8078.2002, 134731, 12391172.
18. Matangkasombut O, Auty R, Buratowski S. Structure and function of the TFIID complex. Adv Protein Chem 2004, 67:67-92.
19. Chen BS, Hampsey M. Transcription activation: unveiling the essential nature of TFIID. Curr Biol 2002, 12(18):R620-622. 10.1016/S0960-9822(02)01134-X, 12372267.
20. Coleman RA, Pugh BF. Evidence for functional binding and stable sliding of the TATA binding protein on nonspecific DNA. J Biol Chem 1995, 270(23):13850-13859. 10.1074/jbc.270.23.13850, 7775443.
21. Kokubo T, Yamashita S, Horikoshi M, Roeder RG, Nakatani Y. Interaction between the N-terminal domain of the 230-kDa subunit and the TATA box-binding subunit of TFIID negatively regulates TATA-box binding. Proc Natl Acad Sci USA 1994, 91(9):3520-3524. 10.1073/pnas.91.9.3520, 43611, 8170939.
22. Liu D, Ishima R, Tong KI, Bagby S, Kokubo T, Muhandiram DR, Kay LE, Nakatani Y, Ikura M. Solution structure of a TBP-TAF(II)230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP. Cell 1998, 94(5):573-583. 10.1016/S0092-8674(00)81599-8, 9741622.
23. Nishikawa J, Kokubo T, Horikoshi M, Roeder RG, Nakatani Y. Drosophila TAF(II)230 and the transcriptional activator VP16 bind competitively to the TATA box-binding domain of the TATA box-binding protein. Proc Natl Acad Sci USA 1997, 94(1):85-90. 10.1073/pnas.94.1.85, 19240, 8990165.
24. Kokubo T, Swanson MJ, Nishikawa JI, Hinnebusch AG, Nakatani Y. The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA-binding protein. Mol Cell Biol 1998, 18(2):1003-1012. 108812, 9447997.
25. Pereira LA, Klejman MP, Timmers HT. Roles for BTAF1 and Mot1p in dynamics of TATA-binding protein and regulation of RNA polymerase II transcription. Gene 2003, 315:1-13.
26. Dasgupta A, Juedes SA, Sprouse RO, Auble DT. Mot1-mediated control of transcription complex assembly and activity. EMBO J 2005, 24(9):1717-1729. 10.1038/sj.emboj.7600646, 1142579, 15861138.
27. Dasgupta A, Darst RP, Martin KJ, Afshari CA, Auble DT. Mot1 activates and represses transcription by direct, ATPase-dependent mechanisms. Proc Natl Acad Sci USA 2002, 99(5):2666-2671. 10.1073/pnas.052397899, 122405, 11880621.
28. Geisberg JV, Moqtaderi Z, Kuras L, Struhl K. Mot1 associates with transcriptionally active promoters and inhibits association of NC2 in Saccharomyces cerevisiae. Mol Cell Biol 2002, 22(23):8122-8134. 10.1128/MCB.22.23.8122-8134.2002, 134071, 12417716.
29. Pereira LA, van der Knaap JA, van den Boom V, van den Heuvel FA, Timmers HT. TAF(II)170 interacts with the concave surface of TATA-binding protein to inhibit its DNA binding activity. Mol Cell Biol 2001, 21(21):7523-7534. 10.1128/MCB.21.21.7523-7534.2001, 99923, 11585931.
30. Chicca JJ, Auble DT, Pugh BF. Cloning and biochemical characterization of TAF-172, a human homolog of yeast Mot1. Mol Cell Biol 1998, 18(3):1701-1710. 108885, 9488487.
31. Goppelt A, Stelzer G, Lottspeich F, Meisterernst M. A mechanism for repression of class II gene transcription through specific binding of NC2 to TBP-promoter complexes via heterodimeric histone fold domains. EMBO J 1996, 15(12):3105-3116. 450253, 8670811.
32. Pugh BF. Control of gene expression through regulation of the TATA-binding protein. Gene 2000, 255(1):1-14. 10.1016/S0378-1119(00)00288-2, 10974559.
33. Willy PJ, Kobayashi R, Kadonaga JT. A basal transcription factor that activates or represses transcription. Science 2000, 290(5493):982-985. 10.1126/science.290.5493.982, 11062130.
34. Hsu JY, Juven-Gershon T, Marr MT, Wright KJ, Tjian R, Kadonaga JT. TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription. Genes Dev 2008, 22(17):2353-2358. 10.1101/gad.1681808, 2532932, 18703680.
35. Malecova B, Gross P, Boyer-Guittaut M, Yavuz S, Oelgeschlager T. The initiator core promoter element antagonizes repression of TATA-directed transcription by negative cofactor NC2. J Biol Chem 2007, 282(34):24767-24776. 10.1074/jbc.M702776200, 17584739.
36. van Werven FJ, van Bakel H, van Teeffelen HA, Altelaar AF, Koerkamp MG, Heck AJ, Holstege FC, Timmers HT. Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome. Genes Dev 2008, 22(17):2359-2369. 10.1101/gad.1682308, 2532931, 18703679.
37. Tora L, Timmers HT. The TATA box regulates TATA-binding protein (TBP) dynamics in vivo. Trends Biochem Sci 35(6):309-314.
38. van Werven FJ, van Teeffelen HA, Holstege FC, Timmers HT. Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome. Nat Struct Mol Biol 2009, 16(10):1043-1048. 10.1038/nsmb.1674, 19767748.
39. Lescure A, Lutz Y, Eberhard D, Jacq X, Krol A, Grummt I, Davidson I, Chambon P, Tora L. The N-terminal domain of the human TATA-binding protein plays a role in transcription from TATA-containing RNA polymerase II and III promoters. EMBO J 1994, 13(5):1166-1175. 394926, 7510635.
40. Mittal V, Hernandez N. Role for the amino-terminal region of human TBP in U6 snRNA transcription. Science 1997, 275(5303):1136-1140. 10.1126/science.275.5303.1136, 9027316.
41. Schmidt EE, Bondareva AA, Radke JR, Capecchi MR. Fundamental cellular processes do not require vertebrate-specific sequences within the TATA-binding protein. J Biol Chem 2003, 278(8):6168-6174. 10.1074/jbc.M211205200, 12471023.
42. Hobbs NK, Bondareva AA, Barnett S, Capecchi MR, Schmidt EE. Removing the vertebrate-specific TBP N terminus disrupts placental beta2m-dependent interactions with the maternal immune system. Cell 2002, 110(1):43-54. 10.1016/S0092-8674(02)00806-1, 2701386, 12150996.
43. van Roon-Mom WM, Reid SJ, Faull RL, Snell RG. TATA-binding protein in neurodegenerative disease. Neuroscience 2005, 133(4):863-872. 10.1016/j.neuroscience.2005.03.024, 15916858.
44. Johnson SA, Dubeau L, Kawalek M, Dervan A, Schonthal AH, Dang CV, Johnson DL. Increased expression of TATA-binding protein, the central transcription factor, can contribute to oncogenesis. Mol Cell Biol 2003, 23(9):3043-3051. 10.1128/MCB.23.9.3043-3051.2003, 153209, 12697807.
45. Johnson SA, Dubeau L, White RJ, Johnson DL. The TATA-binding protein as a regulator of cellular transformation. Cell Cycle 2003, 2(5):442-444.
46. Um M, Yamauchi J, Kato S, Manley JL. Heterozygous disruption of the TATA-binding protein gene in DT40 cells causes reduced cdc25B phosphatase expression and delayed mitosis. Mol Cell Biol 2001, 21(7):2435-2448. 10.1128/MCB.21.7.2435-2448.2001, 86876, 11259592.
47. Christova R, Oelgeschlager T. Association of human TFIID-promoter complexes with silenced mitotic chromatin in vivo. Nat Cell Biol 2002, 4(1):79-82. 10.1038/ncb733, 11744923.
48. Xing H, Vanderford NL, Sarge KD. The TBP-PP2A mitotic complex bookmarks genes by preventing condensin action. Nat Cell Biol 2008, 10(11):1318-1323. 10.1038/ncb1790, 2577711, 18931662.
49. Veenstra GJ, Destree OH, Wolffe AP. Translation of maternal TATA-binding protein mRNA potentiates basal but not activated transcription in Xenopus embryos at the midblastula transition. Mol Cell Biol 1999, 19(12):7972-7982. 84882, 10567523.
50. Gazdag E, Rajkovic A, Torres-Padilla ME, Tora L. Analysis of TATA-binding protein 2 (TBP2) and TBP expression suggests different roles for the two proteins in regulation of gene expression during oogenesis and early mouse development. Reproduction 2007, 134(1):51-62. 10.1530/REP-06-0337, 17641088.
51. Worrad DM, Ram PT, Schultz RM. Regulation of gene expression in the mouse oocyte and early preimplantation embryo: developmental changes in Sp1 and TATA box-binding protein, TBP. Development 1994, 120(8):2347-2357.
52. Prioleau MN, Huet J, Sentenac A, Mechali M. Competition between chromatin and transcription complex assembly regulates gene expression during early development. Cell 1994, 77(3):439-449. 10.1016/0092-8674(94)90158-9, 8181062.
53. Martianov I, Viville S, Davidson I. RNA polymerase II transcription in murine cells lacking the TATA binding protein. Science 2002, 298(5595):1036-1039. 10.1126/science.1076327, 12411709.
54. Muller F, Lakatos L, Dantonel J, Strahle U, Tora L. TBP is not universally required for zygotic RNA polymerase II transcription in zebrafish. Curr Biol 2001, 11(4):282-287. 10.1016/S0960-9822(01)00076-8, 11250159.
55. Veenstra GJ, Weeks DL, Wolffe AP. Distinct roles for TBP and TBP-like factor in early embryonic gene transcription in Xenopus. Science 2000, 290(5500):2312-2315. 10.1126/science.290.5500.2312, 11125147.
56. Jacobi UG, Akkers RC, Pierson ES, Weeks DL, Dagle JM, Veenstra GJ. TBP paralogs accommodate metazoan- and vertebrate-specific developmental gene regulation. EMBO J 2007, 26(17):3900-3909. 10.1038/sj.emboj.7601822, 1994123, 17703192.
57. Gazdag E, Santenard A, Ziegler-Birling C, Altobelli G, Poch O, Tora L, Torres-Padilla ME. TBP2 is essential for germ cell development by regulating transcription and chromatin condensation in the oocyte. Genes Dev 2009, 23(18):2210-2223. 10.1101/gad.535209, 2751983, 19759265.
58. Martianov I, Fimia GM, Dierich A, Parvinen M, Sassone-Corsi P, Davidson I. Late arrest of spermiogenesis and germ cell apoptosis in mice lacking the TBP-like TLF/TRF2 gene. Mol Cell 2001, 7(3):509-515. 10.1016/S1097-2765(01)00198-8, 11463376.
59. Ferg M, Sanges R, Gehrig J, Kiss J, Bauer M, Lovas A, Szabo M, Yang L, Straehle U, Pankratz MJ, Olasz F, Stupka E, Müller F. The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish. EMBO J 2007, 26(17):3945-3956. 10.1038/sj.emboj.7601821, 1950726, 17703193.
60. Crowley TE, Hoey T, Liu JK, Jan YN, Jan LY, Tjian R. A new factor related to TATA-binding protein has highly restricted expression patterns in Drosophila. Nature 1993, 361(6412):557-561. 10.1038/361557a0, 8429912.
61. Hansen SK, Takada S, Jacobson RH, Lis JT, Tjian R. Transcription properties of a cell type-specific TATA-binding protein, TRF. Cell 1997, 91(1):71-83. 10.1016/S0092-8674(01)80010-6, 9335336.
62. Holmes MC, Tjian R. Promoter-selective properties of the TBP-related factor TRF1. Science 2000, 288(5467):867-870. 10.1126/science.288.5467.867, 10797011.
63. Takada S, Lis JT, Zhou S, Tjian R. A TRF1:BRF complex directs Drosophila RNA polymerase III transcription. Cell 2000, 101(5):459-469. 10.1016/S0092-8674(00)80857-0, 10850489.
64. Isogai Y, Takada S, Tjian R, Keles S. Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription. EMBO J 2007, 26(1):79-89. 10.1038/sj.emboj.7601448, 1782360, 17170711.
65. Schramm L, Hernandez N. Recruitment of RNA polymerase III to its target promoters. Genes Dev 2002, 16(20):2593-2620. 10.1101/gad.1018902, 12381659.
66. Dantonel JC, Wurtz JM, Poch O, Moras D, Tora L. The TBP-like factor: an alternative transcription factor in metazoa?. Trends Biochem Sci 1999, 24(9):335-339. 10.1016/S0968-0004(99)01436-X, 10470030.
67. Moore PA, Ozer J, Salunek M, Jan G, Zerby D, Campbell S, Lieberman PM. A human TATA binding protein-related protein with altered DNA binding specificity inhibits transcription from multiple promoters and activators. Mol Cell Biol 1999, 19(11):7610-7620. 84787, 10523649.
68. Rabenstein MD, Zhou S, Lis JT, Tjian R. TATA box-binding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family. Proc Natl Acad Sci USA 1999, 96(9):4791-4796. 10.1073/pnas.96.9.4791, 21770, 10220372.
69. Teichmann M, Wang Z, Martinez E, Tjernberg A, Zhang D, Vollmer F, Chait BT, Roeder RG. Human TATA-binding protein-related factor-2 (hTRF2) stably associates with hTFIIA in HeLa cells. Proc Natl Acad Sci USA 1999, 96(24):13720-13725. 10.1073/pnas.96.24.13720, 24131, 10570139.
70. Dantonel JC, Quintin S, Lakatos L, Labouesse M, Tora L. TBP-like factor is required for embryonic RNA polymerase II transcription in C. elegans. Mol Cell 2000, 6(3):715-722. 10.1016/S1097-2765(00)00069-1, 11030350.
71. Catena R, Argentini M, Martianov I, Parello C, Brancorsini S, Parvinen M, Sassone-Corsi P, Davidson I. Proteolytic cleavage of ALF into alpha- and beta-subunits that form homologous and heterologous complexes with somatic TFIIA and TRF2 in male germ cells. FEBS Lett 2005, 579(16):3401-3410. 10.1016/j.febslet.2005.04.083, 15927180.
72. Kopytova DV, Krasnov AN, Kopantceva MR, Nabirochkina EN, Nikolenko JV, Maksimenko O, Kurshakova MM, Lebedeva LA, Yerokhin MM, Simonova OB, Korochkin LI, Tora L, Georgiev PG, Georgieva SG. Two isoforms of Drosophila TRF2 are involved in embryonic development, premeiotic chromatin condensation, and proper differentiation of germ cells of both sexes. Mol Cell Biol 2006, 26(20):7492-7505. 10.1128/MCB.00349-06, 1636870, 17015475.
73. Chong JA, Moran MM, Teichmann M, Kaczmarek JS, Roeder R, Clapham DE. TATA-binding protein (TBP)-like factor (TLF) is a functional regulator of transcription: reciprocal regulation of the neurofibromatosis type 1 and c-fos genes by TLF/TRF2 and TBP. Mol Cell Biol 2005, 25(7):2632-2643. 10.1128/MCB.25.7.2632-2643.2005, 1061635, 15767669.
74. Ohbayashi T, Shimada M, Nakadai T, Wada T, Handa H, Tamura T. Vertebrate TBP-like protein (TLP/TRF2/TLF) stimulates TATA-less terminal deoxynucleotidyl transferase promoters in a transient reporter assay, and TFIIA-binding capacity of TLP is required for this function. Nucleic Acids Res 2003, 31(8):2127-2133. 10.1093/nar/gkg315, 153743, 12682363.
75. Tanaka Y, Nanba YA, Park KA, Mabuchi T, Suenaga Y, Shiraishi S, Shimada M, Nakadai T, Tamura TA. Transcriptional repression of the mouse wee1 gene by TBP-related factor 2. Biochem Biophys Res Commun 2007, 352(1):21-28. 10.1016/j.bbrc.2006.10.175, 17109819.
76. Kaltenbach L, Horner MA, Rothman JH, Mango SE. The TBP-like factor CeTLF is required to activate RNA polymerase II transcription during C. elegans embryogenesis. Mol Cell 2000, 6(3):705-713. 10.1016/S1097-2765(00)00068-X, 11030349.
77. Zhang D, Penttila TL, Morris PL, Teichmann M, Roeder RG. Spermiogenesis deficiency in mice lacking the Trf2 gene. Science 2001, 292(5519):1153-1155. 10.1126/science.1059188, 11352070.
78. Martianov I, Brancorsini S, Gansmuller A, Parvinen M, Davidson I, Sassone-Corsi P. Distinct functions of TBP and TLF/TRF2 during spermatogenesis: requirement of TLF for heterochromatic chromocenter formation in haploid round spermatids. Development 2002, 129(4):945-955.
79. Hochheimer A, Zhou S, Zheng S, Holmes MC, Tjian R. TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila. Nature 2002, 420(6914):439-445. 10.1038/nature01167, 12459787.
80. Ohler U, Liao GC, Niemann H, Rubin GM. Computational analysis of core promoters in the Drosophila genome. Genome Biol 2002, 3(12):RESEARCH0087. 151189, 12537576.
81. Tomancak P, Beaton A, Weiszmann R, Kwan E, Shu S, Lewis SE, Richards S, Ashburner M, Hartenstein V, Celniker SE, Rubin GM. Systematic determination of patterns of gene expression during Drosophila embryogenesis. Genome Biol 2002, 3(12):RESEARCH0088. 151190, 12537577.
82. Shima S, Aigaki T, Nojima T, Yamamoto D. Identification of trf2 mutants of Drosophila with defects in anterior spiracle eversion. Arch Insect Biochem Physiol 2007, 64(4):157-163. 10.1002/arch.20166, 17366598.
83. Isogai Y, Keles S, Prestel M, Hochheimer A, Tjian R. Transcription of histone gene cluster by differential core-promoter factors. Genes Dev 2007, 21(22):2936-2949. 10.1101/gad.1608807, 2049195, 17978101.
84. Bartfai R, Balduf C, Hilton T, Rathmann Y, Hadzhiev Y, Tora L, Orban L, Muller F. TBP2, a vertebrate-specific member of the TBP family, is required in embryonic development of zebrafish. Curr Biol 2004, 14(7):593-598. 10.1016/j.cub.2004.03.034, 15062100.
85. Jallow Z, Jacobi UG, Weeks DL, Dawid IB, Veenstra GJ. Specialized and redundant roles of TBP and a vertebrate-specific TBP paralog in embryonic gene regulation in Xenopus. Proc Natl Acad Sci USA 2004, 101(37):13525-13530. 10.1073/pnas.0405536101, 518790, 15345743.
86. Akhtar W, Veenstra GJ. TBP2 is a substitute for TBP in Xenopus oocyte transcription. BMC Biol 2009, 7:45. 10.1186/1741-7007-7-45, 2731028, 19650908.
87. Xiao L, Kim M, DeJong J. Developmental and cell type-specific regulation of core promoter transcription factors in germ cells of frogs and mice. Gene Expr Patterns 2006, 6(4):409-419. 10.1016/j.modgep.2005.09.005, 16412700.
88. Yang Y, Cao J, Huang L, Fang HY, Sheng HZ. Regulated expression of TATA-binding protein-related factor 3 (TRF3) during early embryogenesis. Cell Res 2006, 16(7):610-621. 10.1038/sj.cr.7310064, 16721357.
89. Deato MD, Tjian R. Switching of the core transcription machinery during myogenesis. Genes Dev 2007, 21(17):2137-2149. 10.1101/gad.1583407, 1950853, 17704303.
90. Hart DO, Raha T, Lawson ND, Green MR. Initiation of zebrafish haematopoiesis by the TATA-box-binding protein-related factor Trf3. Nature 2007, 450(7172):1082-1085. 10.1038/nature06349, 2150749, 18046332.
91. Hart DO, Santra MK, Raha T, Green MR. Selective interaction between Trf3 and Taf3 required for early development and hematopoiesis. Dev Dyn 2009, 238(10):2540-2549. 10.1002/dvdy.22083, 2861292, 19777587.
92. Goodrich JA, Tjian R. Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation. Nat Rev Genet 11(8):549-558.
93. Muller F, Zaucker A, Tora L. Developmental regulation of transcription initiation: more than just changing the actors. Curr Opin Genet Dev 20(5):533-540.
94. Deato MD, Marr MT, Sottero T, Inouye C, Hu P, Tjian R. MyoD targets TAF3/TRF3 to activate myogenin transcription. Mol Cell 2008, 32(1):96-105. 10.1016/j.molcel.2008.09.009, 2629732, 18851836.
95. Upadhyaya AB, Lee SH, DeJong J. Identification of a general transcription factor TFIIAalpha/beta homolog selectively expressed in testis. J Biol Chem 1999, 274(25):18040-18048. 10.1074/jbc.274.25.18040, 10364255.
96. Han S, Xie W, Hammes SR, DeJong J. Expression of the germ cell-specific transcription factor ALF in Xenopus oocytes compensates for translational inactivation of the somatic factor TFIIA. J Biol Chem 2003, 278(46):45586-45593. 10.1074/jbc.M302884200, 12923189.
97. Freiman RN, Albright SR, Zheng S, Sha WC, Hammer RE, Tjian R. Requirement of tissue-selective TBP-associated factor TAFII105 in ovarian development. Science 2001, 293(5537):2084-2087. 10.1126/science.1061935, 11557891.
98. Falender AE, Freiman RN, Geles KG, Lo KC, Hwang K, Lamb DJ, Morris PL, Tjian R, Richards JS. Maintenance of spermatogenesis requires TAF4b, a gonad-specific subunit of TFIID. Genes Dev 2005, 19(7):794-803. 10.1101/gad.1290105, 1074317, 15774719.
99. Falender AE, Shimada M, Lo YK, Richards JS. TAF4b, a TBP associated factor, is required for oocyte development and function. Dev Biol 2005, 288(2):405-419. 10.1016/j.ydbio.2005.09.038, 16289522.
100. Pointud JC, Mengus G, Brancorsini S, Monaco L, Parvinen M, Sassone-Corsi P, Davidson I. The intracellular localisation of TAF7L, a paralogue of transcription factor TFIID subunit TAF7, is developmentally regulated during male germ-cell differentiation. J Cell Sci 2003, 116(Pt 9):1847-1858.
101. Hiller M, Chen X, Pringle MJ, Suchorolski M, Sancak Y, Viswanathan S, Bolival B, Lin TY, Marino S, Fuller MT. Testis-specific TAF homologs collaborate to control a tissue-specific transcription program. Development 2004, 131(21):5297-5308. 10.1242/dev.01314, 15456720.
102. Hiller MA, Lin TY, Wood C, Fuller MT. Developmental regulation of transcription by a tissue-specific TAF homolog. Genes Dev 2001, 15(8):1021-1030. 10.1101/gad.869101, 312677, 11316795.