TRF2, but not TBP, mediates the transcription of ribosomal protein genes

Genes and Development

Volumn 28, Issue 14, 2014, Pages 1550-1555

  Wang, Yuan Liang ^a   Duttke, Sascha H C ^a   Chen, Kai ^b   Johnston, Jeff ^b   Kassavetis, George A ^a   Zeitlinger, Julia ^b,c   Kadonaga, James T ^a  

^a SECTION OF MOLECULAR BIOLOGY   (United States)

^b STOWERS INSTITUTE FOR MEDICAL RESEARCH   (United States)

^c UNIVERSITY OF KANSAS SCHOOL OF MEDICINE   (United States)

Author keywords

Core promoter; Ribosomal protein genes; RNA polymerase II; TCT motif; TRF2

Indexed keywords

CORE PROMOTER; RIBOSOMAL PROTEIN GENES; RNA POLYMERASE II; TCT MOTIF; TRF2;

AMINO ACID MOTIFS; ANIMALS; CELL LINE; DROSOPHILA; GENE EXPRESSION; PROMOTER REGIONS, GENETIC; PROTEIN TRANSPORT; TATA BOX; TATA-BOX BINDING PROTEIN; TELOMERIC REPEAT BINDING PROTEIN 2; TRANSCRIPTION, GENETIC;

EID: 84904332607     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.245662.114     Document Type: Article

References (32)

1. Akhtar W, Veenstra GJ. 2011. TBP-related factors: a paradigm of diversity in transcription initiation. Cell Biosci 1: 23.
2. Bosio MC, Negri R, Dieci G. 2011. Promoter architectures in the yeast ribosomal expression program. Transcription 2: 71-77.
3. Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. 2013. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. eLife 2: e00861.
4. Cormack BP, Struhl K. 1992. The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells. Cell 69: 685-696.
5. Dantonel JC, Quintin S, Lakatos L, Labouesse M, Tora L. 2000. TBP-like factor is required for embryonic RNA polymerase II transcription in C. elegans. Mol Cell 6: 715-722.
6. Goodrich JA, Tjian R. 2010. Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation. Nat Rev Genet 11: 549-558.
7. He Q, Bardet AF, Patton B, Purvis J, Johnston J, Paulson A, Gogol M, Stark A, Zeitlinger J. 2011. High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species. Nat Genet 43: 414-420.
8. Hernandez N. 1993. TBP, a universal eukaryotic transcription factor? Genes Dev 7: 1291-1308.
9. Hsu JY, Juven-Gershon T, Marr MT 2nd, Wright KJ, Tjian R, Kadonaga JT. 2008. TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription. Genes Dev 22: 2353-2358.
10. Isogai Y, Keles S, Prestel M, Hochheimer A, Tjian R. 2007. Transcription of histone gene cluster by differential core-promoter factors. Genes Dev 21: 2936-2949.
11. Juven-Gershon T, Kadonaga JT. 2010. Regulation of gene expression via the core promoter and the basal transcriptional machinery. Dev Biol 339: 225-229.
12. Juven-Gershon T, Hsu JY, Kadonaga JT. 2008. Caudal, a key developmental regulator, is a DPE-specific transcription factor. Genes Dev 22: 2823-2830.
13. Kadonaga JT. 2012. Perspectives on the RNA polymerase II core promoter. Wiley Interdiscip Rev Dev Biol 1: 40-51.
14. Kaltenbach L, Horner MA, Rothman JH, Mango SE. 2000. The TBP-like factor CeTLF is required to activate RNA polymerase II transcription during C. elegans embryogenesis. Mol Cell 6: 705-713.
15. Kopytova DV, Krasnov AN, Kopantceva MR, Nabirochkina EN, Nikolenko JV, Maksimenko O, Kurshakova MM, Lebedeva LA, Yerokhin MM, Simonova OB, et al. 2006. Two isoforms of Drosophila TRF2 are involved in embryonic development, premeiotic chromatin condensation, and proper differentiation of germ cells of both sexes. Mol Cell Biol 26: 7492-7505.
16. Maldonado E. 1999. Transcriptional functions of a new mammalian TATA-binding protein-related factor. J Biol Chem 274: 12963-12966.
17. Martianov I, Fimia GM, Dierich A, Parvinen M, Sassone-Corsi P, Davidson I. 2001. Late arrest of spermiogenesis and germ cell apoptosis in mice lacking the TBP-like TLF/TRF2 gene. Mol Cell 7: 509-515.
18. Moore PA, Ozer J, Salunek M, Jan G, Zerby D, Campbell S, Lieberman PM. 1999. A human TATA binding protein-related protein with altered DNA binding specificity inhibits transcription from multiple promoters and activators. Mol Cell Biol 19: 7610-7620.
19. Müller F, Lakatos L, Dantonel J, Strähle U, Tora L. 2001. TBP is not universally required for zygotic RNA polymerase II transcription in zebrafish. Curr Biol 11: 282-287.
20. Nakao A, Yoshihama M, Kenmochi N. 2004. RPG: the ribosomal protein gene database. Nucleic Acids Res 32: D168-D170.
21. Nepal C, Hadzhiev Y, Previti C, Haberle V, Li N, Takahashi H, Suzuki AM, Sheng Y, Abdelhamid RF, Anand S, et al. 2013. Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis. Genome Res 23: 1938-1950.
22. Ohbayashi T, Makino Y, Tamura TA. 1999. Identification of a mouse TBP-like protein (TLP) distantly related to the Drosophila TBPrelated factor. Nucleic Acids Res 27: 750-755.
23. Parry TJ, Theisen JW, Hsu JY, Wang YL, Corcoran DL, Eustice M, Ohler U, Kadonaga JT. 2010. The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery. Genes Dev 24: 2013-2018.
24. Perry RP. 2005. The architecture of mammalian ribosomal protein promoters. BMC Evol Biol 5: 15.
25. Rabenstein MD, Zhou S, Lis JT, Tjian R. 1999. TATA box-binding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family. Proc Natl Acad Sci 96: 4791-4796.
26. Reina JH, Hernandez N. 2007. On a roll for new TRF2 targets. Genes Dev 21: 2855-2860.
27. Smale ST, Kadonaga JT. 2003. The RNA polymerase II core promoter. Annu Rev Biochem 72: 449-479.
28. Takai K, Sawasaki T, Endo Y. 2010. Practical cell-free protein synthesis system using purified wheat embryos. Nat Protoc 5: 227-238.
29. Teichmann M, Wang Z, Martinez E, Tjernberg A, Zhang D, Vollmer F, Chait BT, Roeder RG. 1999. Human TATA-binding protein-related factor-2 (hTRF2) stably associates with hTFIIA in HeLa cells. Proc Natl Acad Sci 96: 13720-13725.
30. Veenstra GJ, Weeks DL, Wolffe AP. 2000. Distinct roles for TBP and TBPlike factor in early embryonic gene transcription in Xenopus. Science 290: 2312-2315.
31. Zhang D, Penttila TL, Morris PL, Teichmann M, Roeder RG. 2001. Spermiogenesis deficiency in mice lacking the Trf2 gene. Science 292: 1153-1155.
32. Zhou H, Grubisic I, Zheng K, He Y, Wang PJ, Kaplan T, Tjian R. 2013. Taf7l cooperates with Trf2 to regulate spermiogenesis. Proc Natl Acad Sci 110: 16886-16891.