-
1
-
-
12044255023
-
Success of phylogenetic methods in the four-taxon case
-
Huelsenbeck JP, Hillis D.M. (1993) Success of phylogenetic methods in the four-taxon case. Systematic Biology 42: 247-264.
-
(1993)
Systematic Biology
, vol.42
, pp. 247-264
-
-
Huelsenbeck, J.P.1
Hillis, D.M.2
-
2
-
-
0029113744
-
The robustness of two phylogenetic methods: Four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining
-
Huelsenbeck JP (1995) The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining. Molecular biology and evolution 12: 843-9.
-
(1995)
Molecular Biology and Evolution
, vol.12
, pp. 843-849
-
-
Huelsenbeck, J.P.1
-
3
-
-
12044254698
-
Evaluating the phylogenetic utility of genes: A search for genes informative about deep divergences among vertebrates
-
Graybeal A (1994) Evaluating the phylogenetic utility of genes: A search for genes informative about deep divergences among vertebrates. Systematic Biology 43: 174-193.
-
(1994)
Systematic Biology
, vol.43
, pp. 174-193
-
-
Graybeal, A.1
-
4
-
-
38549135938
-
Alignment uncertainty and genomic analysis
-
Wong KM, Suchard MA, Huelsenbeck J.P. (2008) Alignment uncertainty and genomic analysis. Science 319: 473-476.
-
(2008)
Science
, vol.319
, pp. 473-476
-
-
Wong, K.M.1
Suchard, M.A.2
Huelsenbeck, J.P.3
-
6
-
-
0035527406
-
Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods
-
Swofford DL, Waddell PJ, Huelsenbeck J.P., Foster PG, Lewis PO, et al. (2001) Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Systematic biology 50: 525-39.
-
(2001)
Systematic Biology
, vol.50
, pp. 525-539
-
-
Swofford, D.L.1
Waddell, P.J.2
Huelsenbeck, J.P.3
Foster, P.G.4
Lewis, P.O.5
-
7
-
-
11944268967
-
Performance of phylogenetic methods in simulation
-
Huelsenbeck JP (1995) Performance of phylogenetic methods in simulation. Systematic Biology 44: 17-48.
-
(1995)
Systematic Biology
, vol.44
, pp. 17-48
-
-
Huelsenbeck, J.P.1
-
8
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein J (1978) Cases in which parsimony or compatibility methods Will be positively misleading. Systematic Zoology 27: 401-410.
-
(1978)
Systematic Zoology
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
9
-
-
0000084234
-
A framework for the quantitative study of evolutionary trees
-
Hendy MD, Penny D. (1989) A framework for the quantitative study of evolutionary trees. Systematic Zoology 38: 297-309.
-
(1989)
Systematic Zoology
, vol.38
, pp. 297-309
-
-
Hendy, M.D.1
Penny, D.2
-
10
-
-
0242655936
-
Frequent inconsistency of parsimony under a simple model of cladogenesis
-
Huelsenbeck JP, Lander K.M. (2003) Frequent inconsistency of parsimony under a simple model of cladogenesis. Systematic Biology 52: 641-648.
-
(2003)
Systematic Biology
, vol.52
, pp. 641-648
-
-
Huelsenbeck, J.P.1
Lander, K.M.2
-
11
-
-
0031084114
-
Is the felsenstein zone a fly trap?
-
Huelsenbeck JP (1997) Is the Felsenstein zone a fly trap? Systematic Biology 46: 69-74.
-
(1997)
Systematic Biology
, vol.46
, pp. 69-74
-
-
Huelsenbeck, J.P.1
-
12
-
-
23444447788
-
Insect homeotic transformation
-
Whiting MF, Wheeler W.C. (1994) Insect homeotic transformation. Nature 368: 696.
-
(1994)
Nature
, vol.368
, pp. 696
-
-
Whiting, M.F.1
Wheeler, W.C.2
-
13
-
-
0028963581
-
Do long branches attract flies?
-
Carmean D, Crespi B. (1995) Do long branches attract flies? Nature 373: 666.
-
(1995)
Nature
, vol.373
, pp. 666
-
-
Carmean, D.1
Crespi, B.2
-
14
-
-
67650755986
-
Single-copy nuclear genes resolve the phylogeny of the holometabolous insects
-
Wiegmann BM, Trautwein MD, Kim J.W., Cassel BK, Bertone MA, et al. (2009) Single-copy nuclear genes resolve the phylogeny of the holometabolous insects. Bmc Biology 7: 34.
-
(2009)
Bmc Biology
, vol.7
, pp. 34
-
-
Wiegmann, B.M.1
Trautwein, M.D.2
Kim, J.W.3
Cassel, B.K.4
Bertone, M.A.5
-
15
-
-
77953129754
-
Ribosomal protein genes of holometabolan insects reject the halteria, instead revealing a close affinity of strepsiptera with coleoptera
-
Longhorn SJ, Pohl HW, Vogler A.P. (2010) Ribosomal protein genes of holometabolan insects reject the Halteria, instead revealing a close affinity of Strepsiptera with Coleoptera. Molecular Phylogenetics and Evolution 55: 846-859.
-
(2010)
Molecular Phylogenetics and Evolution
, vol.55
, pp. 846-859
-
-
Longhorn, S.J.1
Pohl, H.W.2
Vogler, A.P.3
-
16
-
-
0002976380
-
Observations de M. Rossi sur un nouveau genre d'Insecte, voisin des ichneumons
-
Rossi P (1793) Observations de M. Rossi sur un nouveau genre d'Insecte, voisin des Ichneumons. Bul Soc Philomatique 1: 49.
-
(1793)
Bul Soc Philomatique
, vol.1
, pp. 49
-
-
Rossi, P.1
-
18
-
-
0002247272
-
Morphologische befunde an fächerflüglern und ihre phylogenetische bedeutung (Insecta: Strepsiptera)
-
Kinzelbach RK (1971) Morphologische Befunde an Fächerflüglern und ihre phylogenetische Bedeutung (Insecta: Strepsiptera). Zoologica 119: 129-256.
-
(1971)
Zoologica
, vol.119
, pp. 129-256
-
-
Kinzelbach, R.K.1
-
20
-
-
84981661854
-
Review of the order strepsiptera
-
Kathirithamby J (1989) Review of the Order Strepsiptera. Systematic Entomology 14: 41-92.
-
(1989)
Systematic Entomology
, vol.14
, pp. 41-92
-
-
Kathirithamby, J.1
-
21
-
-
26944455641
-
Mating of xenos vesparum (Rossi) (Strepsiptera, INsecta) revisited
-
Beani L, Giusti F, Mercati D., Lupetti P, Paccagnini E, et al (2005) Mating of Xenos vesparum (Rossi) (Strepsiptera, INsecta) revisited. Journal of Morphology 265: 291-303.
-
(2005)
Journal of Morphology
, vol.265
, pp. 291-303
-
-
Beani, L.1
Giusti, F.2
Mercati, D.3
Lupetti, P.4
Paccagnini, E.5
-
22
-
-
60549113277
-
Host-parasitoid associations in strepsiptera
-
Kathirithamby J (2009) Host-parasitoid associations in Strepsiptera. Annual Review of Entomology 54: 227-249.
-
(2009)
Annual Review of Entomology
, vol.54
, pp. 227-249
-
-
Kathirithamby, J.1
-
23
-
-
44549083054
-
The evolution of strepsiptera (Hexapoda)
-
Pohl H, Beutel R.G. (2008) The evolution of Strepsiptera (Hexapoda). Zoology (Jena, Germany) 111: 318-338.
-
(2008)
Zoology (Jena, Germany)
, vol.111
, pp. 318-338
-
-
Pohl, H.1
Beutel, R.G.2
-
24
-
-
79959622815
-
The first molecular phylogeny of strepsiptera (Insecta) reveals an early burst of molecular evolution correlated with the transition to endoparasitism
-
McMahon DP, Hayward A, Kathirithamby J. (2011) The first molecular phylogeny of Strepsiptera (Insecta) reveals an early burst of molecular evolution correlated with the transition to endoparasitism. PLoS ONE 6: e21206.
-
(2011)
PLoS ONE
, vol.6
, pp. e21206
-
-
McMahon, D.P.1
Hayward, A.2
Kathirithamby, J.3
-
25
-
-
33645888060
-
The phylogeny of strepsiptera (Hexapoda)
-
Pohl H, Beutel R.G. (2005) The phylogeny of Strepsiptera (Hexapoda). Cladistics 21: 328-374.
-
(2005)
Cladistics
, vol.21
, pp. 328-374
-
-
Pohl, H.1
Beutel, R.G.2
-
26
-
-
84907509290
-
New findings on life history traits of xenos peckii (strepsiptera: Xenidae)
-
Hrabar M, Danci A, McCann S., Schaefer P, Gries G. (2014) New findings on life history traits of Xenos peckii (strepsiptera: Xenidae). The Canadian Entomologist First View: 1-14.
-
(2014)
The Canadian Entomologist First View
, pp. 1-14
-
-
Hrabar, M.1
Danci, A.2
McCann, S.3
Schaefer, P.4
Gries, G.5
-
27
-
-
11144297976
-
Tiny genomes and endoreduplication in strepsiptera
-
Johnston JS, Ross LD, Beani L, Hughes D.P., Kathirithamby J. (2004) Tiny genomes and endoreduplication in Strepsiptera. Insect molecular biology 13: 581-585.
-
(2004)
Insect Molecular Biology
, vol.13
, pp. 581-585
-
-
Johnston, J.S.1
Ross, L.D.2
Beani, L.3
Hughes, D.P.4
Kathirithamby, J.5
-
28
-
-
33645263708
-
Assessing the odd secondary structural properties of nuclear small subunit ribosomal RNA sequences (18S) of the twisted-wing parasites (Insecta: Strepsiptera)
-
Gillespie JJ, McKenna CH, Yoder M.J., Gutell RR, Johnston JS, et al. (2005) Assessing the odd secondary structural properties of nuclear small subunit ribosomal RNA sequences (18S) of the twisted-wing parasites (Insecta: Strepsiptera). Insect Molecular Biology 14: 625-643.
-
(2005)
Insect Molecular Biology
, vol.14
, pp. 625-643
-
-
Gillespie, J.J.1
McKenna, C.H.2
Yoder, M.J.3
Gutell, R.R.4
Johnston, J.S.5
-
32
-
-
0031084115
-
The strepsiptera problem: Phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology
-
Whiting MF, Carpenter JC, Wheeler Q.D., Wheeler W.C. (1997) The Strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology. Systematic Biology 46: 1-68.
-
(1997)
Systematic Biology
, vol.46
, pp. 1-68
-
-
Whiting, M.F.1
Carpenter, J.C.2
Wheeler, Q.D.3
Wheeler, W.C.4
-
34
-
-
79951580071
-
Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences
-
Ishiwata K, Sasaki G, Ogawa J., Miyata T, Su Z.H. (2010) Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences. Molecular Phylogenetics and Evolution 58: 1-49.
-
(2010)
Molecular Phylogenetics and Evolution
, vol.58
, pp. 1-49
-
-
Ishiwata, K.1
Sasaki, G.2
Ogawa, J.3
Miyata, T.4
Su, Z.H.5
-
35
-
-
77955624876
-
9-genes reinforce the phylogeny of holometabola and yield alternate views on the phylogenetic placement of strepsiptera
-
McKenna DD, Farrell B.D. (2010) 9-genes reinforce the phylogeny of Holometabola and yield alternate views on the phylogenetic placement of Strepsiptera. PLoS ONE 5: e11887.
-
(2010)
PLoS ONE
, vol.5
, pp. e11887
-
-
McKenna, D.D.1
Farrell, B.D.2
-
36
-
-
84864284383
-
Genomic and morphological evidence converge to resolve the enigma of strepsiptera
-
Niehuis O, Hartig G, Grath S., Pohl H, Lehmann J, et al (2012) Genomic and morphological evidence converge to resolve the enigma of Strepsiptera. Current Biology 22: 1309-1313.
-
(2012)
Current Biology
, vol.22
, pp. 1309-1313
-
-
Niehuis, O.1
Hartig, G.2
Grath, S.3
Pohl, H.4
Lehmann, J.5
-
37
-
-
0003820345
-
-
Washington DC: American Entomological Institute, Catholic Univ. American Press edition
-
Arnett RH (1963) The Beetles of the United States. Washington DC: American Entomological Institute, Catholic Univ. American Press edition.
-
(1963)
The Beetles of the United States
-
-
Arnett, R.H.1
-
39
-
-
0004223942
-
-
Academic Press, London London: Academic Press, roy albert crowson edition
-
Crowson RA (1981) The Biology of the Coleoptera. Academic Press, London, 802pp. London: Academic Press, roy albert crowson edition.
-
(1981)
The Biology of the Coleoptera
-
-
Crowson, R.A.1
-
40
-
-
0004221702
-
-
Princeton, N.J.: Princeton University Press. Includes bibliographical references indexes
-
Schmid-Hempel P (1998) Parasites in social insects. Princeton, N.J.: Princeton University Press. Includes bibliographical references (p. 325-380) and indexes.
-
(1998)
Parasites in Social Insects
, pp. 325-380
-
-
Schmid-Hempel, P.1
-
41
-
-
0000533828
-
Phylogeny of extant hexapods
-
D NI, B CP, F LJ, S NE, P SJ, et al., editors Melbourne: Melbourne Univ. Press
-
Kristensen NP (1991) Phylogeny of extant hexapods. In: D NI, B CP, F LJ, S NE, P SJ, et al., editors, Insects of Australia, Melbourne: Melbourne Univ. Press. pp. 125-140.
-
(1991)
Insects of Australia
, pp. 125-140
-
-
Kristensen, N.P.1
-
42
-
-
83455162532
-
Advances in insect phylogeny at the dawn of the postgenomic era
-
Trautwein MD, Wiegmann BM, Beutel R, Kjer K.M., Yeates D.K. (2012) Advances in insect phylogeny at the dawn of the postgenomic era. Annual Review of Entomology 57: 449-468.
-
(2012)
Annual Review of Entomology
, vol.57
, pp. 449-468
-
-
Trautwein, M.D.1
Wiegmann, B.M.2
Beutel, R.3
Kjer, K.M.4
Yeates, D.K.5
-
43
-
-
84899049765
-
The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data
-
Peters RS, Meusemann K, Petersen M., Mayer C, Wilbrandt J, et al (2014) The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data. BMC evolutionary biology 14: 52.
-
(2014)
BMC Evolutionary Biology
, vol.14
, pp. 52
-
-
Peters, R.S.1
Meusemann, K.2
Petersen, M.3
Mayer, C.4
Wilbrandt, J.5
-
44
-
-
33644536713
-
Tunicates and not cephalochordates are the closest living relatives of vertebrates
-
Delsuc F, Brinkmann H, Chourrout D., Philippe H. (2006) Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439: 965-968.
-
(2006)
Nature
, vol.439
, pp. 965-968
-
-
Delsuc, F.1
Brinkmann, H.2
Chourrout, D.3
Philippe, H.4
-
45
-
-
11944260600
-
Phylogenetic analysis of the complete genome sequence of encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes
-
Thomarat F, Vivarès CP, Gouy M. (2004) Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of Microsporidia and reveals a high frequency of fast-evolving genes. Journal of Molecular Evolution 59: 780-791.
-
(2004)
Journal of Molecular Evolution
, vol.59
, pp. 780-791
-
-
Thomarat, F.1
Vivarès, C.P.2
Gouy, M.3
-
46
-
-
0031010579
-
Evidence for a clade of nematodes, arthropods and other moulting animals
-
Aguinaldo AM, Turbeville JM, Linford L.S., Rivera MC, Garey JR, et al. (1997) Evidence for a clade of nematodes, arthropods and other moulting animals. Nature 387: 489-493.
-
(1997)
Nature
, vol.387
, pp. 489-493
-
-
Aguinaldo, A.M.1
Turbeville, J.M.2
Linford, L.S.3
Rivera, M.C.4
Garey, J.R.5
-
47
-
-
17744386162
-
Multigene analyses of bilaterian animals corroborate the monophyly of ecdysozoa, lophotrochozoa, and protostomia
-
Philippe H (2005) Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Molecular Biology and Evolution 22: 1246-1253.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 1246-1253
-
-
Philippe, H.1
-
48
-
-
84866766127
-
Parallel molecular evolution in an herbivore community
-
Zhen Y, Aardema ML, Medina E.M., Schumer M., Andolfatto P. (2012) Parallel molecular evolution in an herbivore community. Science 337: 1634-1637.
-
(2012)
Science
, vol.337
, pp. 1634-1637
-
-
Zhen, Y.1
Aardema, M.L.2
Medina, E.M.3
Schumer, M.4
Andolfatto, P.5
-
49
-
-
84871849373
-
Serine codon-usage bias in deep phylogenomics: Pancrustacean relationships as a case study
-
Rota-Stabelli O., Lartillot N, Philippe H., Pisani D, Stabelli OR, et al (2013) Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study. Systematic Biology 62: 121-33.
-
(2013)
Systematic Biology
, vol.62
, pp. 121-133
-
-
Rota-Stabelli, O.1
Lartillot, N.2
Philippe, H.3
Pisani, D.4
Stabelli, O.R.5
-
50
-
-
2442691520
-
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
-
Lartillot N, Philippe H. (2004) A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Molecular Biology and Evolution 21: 1095-1109.
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 1095-1109
-
-
Lartillot, N.1
Philippe, H.2
-
51
-
-
79951563718
-
Biologically inspired phylogenetic models strongly outperform the no common mechanism model
-
Huelsenbeck JP, Alfaro ME, Suchard M.A. (2011) Biologically inspired phylogenetic models strongly outperform the no common mechanism model. Systematic Biology 60: 225-232.
-
(2011)
Systematic Biology
, vol.60
, pp. 225-232
-
-
Huelsenbeck, J.P.1
Alfaro, M.E.2
Suchard, M.A.3
-
52
-
-
33644588719
-
Comparative performance of Bayesian and AIC-based measures of phylogenetic model uncertainty
-
Alfaro ME, Huelsenbeck J.P. (2006) Comparative performance of Bayesian and AIC-based measures of phylogenetic model uncertainty. Systematic Biology 55: 89-96.
-
(2006)
Systematic Biology
, vol.55
, pp. 89-96
-
-
Alfaro, M.E.1
Huelsenbeck, J.P.2
-
53
-
-
9644301241
-
Model selection and model averaging in phylogenetics: Advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests
-
Posada D, Buckley T.R. (2004) Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Systematic Biology 53: 793-808.
-
(2004)
Systematic Biology
, vol.53
, pp. 793-808
-
-
Posada, D.1
Buckley, T.R.2
-
54
-
-
0035861456
-
Bayesian inference of phylogeny and its impact on evolutionary biology
-
Huelsenbeck JP, Ronquist F, Nielsen R., Bollback J.P. (2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294: 2310-2314.
-
(2001)
Science
, vol.294
, pp. 2310-2314
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
Nielsen, R.3
Bollback, J.P.4
-
55
-
-
0035986890
-
Bayesian model adequacy and choice in phylogenetics
-
Bollback JP (2002) Bayesian model adequacy and choice in phylogenetics. Molecular Biology and Evolution 19: 1171-1180.
-
(2002)
Molecular Biology and Evolution
, vol.19
, pp. 1171-1180
-
-
Bollback, J.P.1
-
56
-
-
34248159030
-
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
-
Lartillot N, Brinkmann H, Philippe H. (2007) Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evolutionary Biology 7: S4.
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. S4
-
-
Lartillot, N.1
Brinkmann, H.2
Philippe, H.3
-
57
-
-
0002671410
-
Some probabilistic and statistical problems in the analysis of DNA sequences
-
Tavaré S (1986) Some probabilistic and statistical problems in the analysis of DNA sequences. Lect Math Life Sci 17: 57-86.
-
(1986)
Lect Math Life Sci
, vol.17
, pp. 57-86
-
-
Tavaré, S.1
-
58
-
-
45849154166
-
An improved general amino acid replacement matrix
-
Le SQ, Gascuel O. (2008) An improved general amino acid replacement matrix. Molecular Biology and Evolution 25: 1307.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 1307
-
-
Le, S.Q.1
Gascuel, O.2
-
59
-
-
37549050969
-
A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation
-
Hunt T, Bergsten J, Levkanicova Z., Papadopoulou A, John OS, et al (2007) A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation. Science 318: 1913-1916.
-
(2007)
Science
, vol.318
, pp. 1913-1916
-
-
Hunt, T.1
Bergsten, J.2
Levkanicova, Z.3
Papadopoulou, A.4
John, O.S.5
-
60
-
-
10344254308
-
Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I
-
Hrdy I, Hirt RP, Dolezal P, Bardonová L, Foster PG, et al. (2004) Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I. Nature 432: 618-622.
-
(2004)
Nature
, vol.432
, pp. 618-622
-
-
Hrdy, I.1
Hirt, R.P.2
Dolezal, P.3
Bardonová, L.4
Foster, P.G.5
-
61
-
-
58149512792
-
The archaebacterial origin of eukaryotes
-
Cox C, Foster P, Hirt R., Harris S, Embley T. (2008) The archaebacterial origin of eukaryotes. Proceedings of the National Academy of Sciences of the USA 105: 20356.
-
(2008)
Proceedings of the National Academy of Sciences of the USA
, vol.105
, pp. 20356
-
-
Cox, C.1
Foster, P.2
Hirt, R.3
Harris, S.4
Embley, T.5
-
62
-
-
70349434888
-
Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics
-
Sheffield N, Song H, Cameron S., Whiting M. (2009) Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics. Systematic Biology 58: 381.
-
(2009)
Systematic Biology
, vol.58
, pp. 381
-
-
Sheffield, N.1
Song, H.2
Cameron, S.3
Whiting, M.4
-
63
-
-
4444220955
-
Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA
-
Anderson FE, Swofford D.L. (2004) Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA. Molecular Phylogenetics and Evolution 33: 440-451.
-
(2004)
Molecular Phylogenetics and Evolution
, vol.33
, pp. 440-451
-
-
Anderson, F.E.1
Swofford, D.L.2
-
64
-
-
79960264362
-
Full-length transcriptome assembly from RNA-seq data without a reference genome
-
Grabherr MG, Haas BJ, Yassour M, Levin J.Z., Thompson DA, et al. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology 29: 644-652.
-
(2011)
Nature Biotechnology
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
-
65
-
-
79955013072
-
Ultra-fast sequence clustering from similarity networks with SiLiX
-
Miele V, Penel S, Duret L. (2011) Ultra-fast sequence clustering from similarity networks with SiLiX. BMC Bioinformatics 12: 116.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 116
-
-
Miele, V.1
Penel, S.2
Duret, L.3
-
66
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast fourier transform
-
Katoh K (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30: 3059-3066.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
-
67
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin A.P. (2010) FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS ONE 5: e9490.
-
(2010)
PLoS ONE
, vol.5
, pp. e9490
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
68
-
-
84861368644
-
Phylo-MCOA: A fast and efficient method to detect outlier genes and species in phylogenomics using multiple co-inertia analysis
-
de Vienne D.M., Ollier S, Aguileta G. (2012) Phylo-MCOA: A fast and efficient method to detect outlier genes and species in phylogenomics using multiple co-inertia analysis. Molecular Biology and Evolution 29: 1587-1598.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 1587-1598
-
-
De Vienne, D.M.1
Ollier, S.2
Aguileta, G.3
-
69
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540-552.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
70
-
-
69949126557
-
PhyloBayes 3: A Bayesian software package for phylogenetic reconstruction and molecular dating
-
Lartillot N, Lepage T, Blanquart S. (2009) PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics (Oxford, England) 25: 2286.
-
(2009)
Bioinformatics (Oxford, England)
, vol.25
, pp. 2286
-
-
Lartillot, N.1
Lepage, T.2
Blanquart, S.3
|