9-genes reinforce the phylogeny of holometabola and yield alternate views on the phylogenetic placement of Strepsiptera

PLoS ONE

Volumn 5, Issue 7, 2010, Pages

  McKenna, Duane D ^a   Farrell, Brian D ^b  

^a University of Memphis   (United States)

^b HARVARD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBAMOYL PHOSPHATE SYNTHASE; ELONGATION FACTOR 1ALPHA; PHENYLALANINE TRANSFER RNA LIGASE; PHOSPHOGLUCONATE DEHYDROGENASE; RIBOSOME PROTEIN; RNA 18S; RNA 28S; RNA POLYMERASE II; TRIOSEPHOSPHATE ISOMERASE; INSECT PROTEIN;

ARTICLE; BEETLE; COLEOPTERA; CONTROLLED STUDY; GENE IDENTIFICATION; HOLOMETABOLA; MONOPHYLY; NEUROPTERIDA; NEUROPTEROIDEA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT; STREPSIPTERA; ANIMAL; CLASSIFICATION; DNA SEQUENCE; GENETICS; HISTOLOGY; INSECT;

COLEOPTERA; DIPTERA; ENDOPTERYGOTA; HEXAPODA; NEUROPTERIDA; STREPSIPTERA;

ANIMALS; INSECT PROTEINS; INSECTS; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 77955624876     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0011887     Document Type: Article

References (77)

1. Proffitt F (2005) Twisted Parasites From "Outer Space" Perplex Biologists. Science 307(5708): 343.
2. Pohl H, Beutel RG (2004) Fine structure of adhesive devices of Strepsiptera (Insecta). Arth Struct & Dev 33: 31-43.
3. Kinzelbach RK (1978) Insecta, Fächerflü gler (Strepsiptera). Die Tierwelt Deutschlands, 65: 166.
4. Kinzelbach RK (1990) The systematic position of Strepsiptera (Insecta). Am Entomol 36: 292-303.
5. Pohl H (2002) Phylogeny of the Strepsiptera based on morphological data of the first instar larvae. Zool Scr 31: 123-138.
6. Bravo F, Pohl H, Silva-Neto A, Beutel RG (2009) Bahiaxenidae, a "living fossil" and a new family of Strepsiptera (Hexapoda) discovered in Brazil. Cladistics 25: 614-623.
7. Kathirithamby J (1998) Host-parasite associations of Strepsiptera: anatomical and developmental consequences. Int J Insect Morphol Embryol 27: 39-51.
8. Kathirithamby J (2009) Host-parasitoid associations in Strepsiptera. Annu Rev Entomol 54: 227-249.
9. Pohl H, Beutel RG (2005) The phylogeny of Strepsiptera (Hexapoda). Cladistics 21: 328-374.
10. Kathirithamby J (1989) Review of the order Strepsiptera. Syst Entomol 14: 41-92.
11. Buschbeck EK, Ehmer B, Hoy RR (1999) Chunk versus point sampling: visual imaging in a small insect. Science 286: 1178-1180.
12. Buschbeck EK, Ehmer B, Hoy RR (2003) The unusual visual system of the Strepsiptera: external eye and neuropils. J Comp Physiol A Sens Neural Behav Physiol 189: 617-630.
13. Rossi P (1793) Observations de M. Rossi sur un nouveau genre d'insecte voisin des Ichneumons. Bulletin de la Socie ́te ́ Philomanthique 1: 49.
14. Kirby W (1813) VI. Strepsiptera a new order of insects proposed and: The characters of the order, with the genera laid down. Trans Linn Soc Lond 11: 86-123.
15. Latreille PA (1809) Genera crustaceorum et insectorum secundum ordinem naturalem in familias disposita, iconibus exemplisque plurimus explicata. Genera Crust Insect 4: 388.
16. Handlirsch A (1903) Zur Phylogenie der Hexapoden (Strepsiptera). Sitzungsberichte der Akademie der Wissenschaften, Wien 113: 716-738.
17. Shipley AE (1904) The orders of insects (Strepsiptera). Zool Anz 27: 259-262.
18. Pierce WD (1904) Some Hypermetamorphic Beetles and their Hymenopterous Host. University Studies, published by the University of Nebraska 4: 15-18.
19. Pierce WD (1909) A monographic revision of the twisted winged insects comprising the order Strepsiptera Kirby. Proc Entomol Soc Wash 66: 1-232.
20. Böving AG, Craighead FC (1931) An illustrated synopsis of the principal larval forms of the order Coleoptera. Entomol Am 11: 1-351.
21. Crowson RA (1960) The phylogeny of the Coleoptera. Annu Rev Entomol 5: 111-134.
22. Crowson RA (1981) The Biology of the Coleoptera. New York: Academic Press. 802 p.
23. Kukalova-Peck J, Lawrence JF (1993) Evolution of the hind wing in Coleoptera. Can Entomol 125: 181-258.
24. Whiting MF (2002a) Phylogeny of the holometabolous insect orders: molecular evidence. Zool Scr 31: 3-15.
25. Whiting MF (2005) Phylogenetic position of Diptera: Review of the Evidence. In: Yeates DK, Wiegmann BM, eds. The Evolutionary Biology of Flies. New York: Columbia University Press. pp 3-13.
26. Whiting MF, Kathirithamby J (1995) Strepsiptera do not share hind wing venational synapomorphies with Coleoptera: a reply to Kukalova-Peck and Lawrence. J New York Entomol Soc 103: 1-14.
27. Pohl H, Beutel RG (2008) The evolution of Strepsiptera (Hexapoda). Zoology 111: 318-338.
28. Wiegmann BM, Kim J, Trautwein MD (2009) Holometabolous Insects (Holometabola). In: Hedges B, Kumar S, eds. The Timetree of Life Oxford Univ. Press). pp 260-263.
29. Wiegmann BM, Trautwein MD, Kim J, Cassel BK, Bertone M, et al. (2009) Single-copy nuclear genes resolve the phylogeny of the holometabolous insects. BMC Biol 7: 34.
30. Longhorn SJ, Pohl HW, Vogler AP (2010) Ribosomal protein genes of holometabolan insects reject the Halteria, instead revealing a close affinity of Strepsiptera with Coleoptera. Mol Phylogenet Evol 55: 846-59.
31. Ross HH, Ross CA, Ross JRP (1982) A Textbook of Entomology, 4th ed. New York: Wiley. 666 p.
32. Hennig W (1981) Insect Phylogeny. New York: Academic Press. 536 p.
33. Friedrich F, Beutel RG (2010) Goodbye Halteria? The thoracic morphology of Endopterygota (Insecta) and its phylogenetic implications. Cladistics 26: 1-34.
34. Whiting MF, Wheeler WC (1994) Insect homeotic transformation. Nature 368: 696.
35. Chalwatzis N, Bauf J, van De Peer Y, Kinzelbach R, Zimmermann FK (1996) 18S ribosomal RNA genes of insects: Primary structure of the genes and molecular phylogeny of the Holometabola. Ann Entomol Soc Am 89: 788-803.
36. Whiting MF, Carpenter JC, Wheeler WC, Wheeler QD (1997) The Strepsiptera problem: Phylogeny of the holometabolous insect orders inferred from 18s and 28s ribosomal DNA sequences and morphology. Syst Biol 46: 1-68.
37. Wheeler WC, Whiting M, Wheeler QD, Carpenter JM (2001) The phylogeny of the extant hexapod orders. Cladistics 17: 113-169.
38. Kristensen NP (1981) Phylogeny of insect orders. Annu Rev Entomol 26: 135-157.
39. Kristensen NP (1991) Phylogeny of extant hexapods. In: Naumann ID, Carne PB, Lawrence JF, Neilson ES, Spradberry JP, Taylor RW, Whitten MJ, Littlejohn MJ, eds. The Insects of Australia: A textbook for students and research workers. Melbourne: Melbourne University Press. pp 125-140.
40. Carmean D, Crespi BJ (1995) Do long branches attract flies? Nature 373: 666-670.
41. Huelsenbeck JP (1997) Is the Felsenstein Zone a fly trap? Syst Biol 46: 69-74.
42. Huelsenbeck JP (1998) Systematic bias in phylogenetic analysis: is the Strepsiptera problem solved? Syst Biol 47: 519-537.
43. Huelsenbeck JP (2001) A Bayesian perspective of the Strepsiptera problem. Tijdschr Entomol 144: 165-178.
44. Kristensen NP (1999) Phylogeny of endopterygote insects, the most successful lineage of living organisms. Eur J Entomol 96: 237-253.
45. Hwang UW, Kim W, Tautz D, Friedrich M (1998) Molecular phylogenetics at the Felsenstein Zone: Approaching the Strepsiptera problem using 5.8S and 28S rDNA sequences. Mol Phylogenet Evol 9: 470-480.
46. Beutel RG, Pohl H (2006) Endopterygote systematics - Where do we stand and what is the goal (Hexapoda, Arthropoda)? Syst Entomol 31: 202.
47. Rokas A, Kathirithamby J, Holland PWH (1999) Intron insertion as a phylogenetics character: the engrailed homeobox does not indicate affinity with Diptera. Insect Mol Biol 8: 527-530.
48. Kristensen NP (1975) The phylogeny of hexapod "orders." A critical review of recent accounts. J Zoolog Syst Evol Res 13: 1-44.
49. Grimaldi D, Engel MS (2005) Evolution of the Insects. Cambridge: Cambridge University Press. 784 p.
50. Felsenstein J (1978) Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 27: 401-410.
51. Hayward DC, Trueman JWH, Bastiani MJ, Ball EE (2005) The structure of the USP/PXR of Xenos pecki indicates that Strepsiptera are not closely related to Diptera. Dev Genes Evol 215: 213-219.
52. Bonneton F, Brunet FG, Kathirithamby J, Laudet V (2006) The rapid divergence of the ecdysone receptor is a synapomorphy for Mecopterida that clarifies the Strepsiptera problem. Insect Mol Biol 15: 351-362.
53. Beutel RG, Haas F (2000) Phylogenetic relationships of the suborders of Coleoptera (Insecta). Cladistics 16: 103-141.
54. Hunt T, Bergsten J, Levkanicova Z, Papadopoulou A, John OS, et al. (2007) A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation. Science 318: 1913-1916.
55. McKenna DD, Farrell BD (2009) Coleoptera. In: Hedges B, Kumar S, eds. The Timetree of Life. Oxford: Oxford University Press. pp 278-289.
56. Lawrence JF, Newton AF (1995) Families and subfamilies of Coleoptera (with selected genera, notes, references and data on family-group names). In: Pakaluk J, Slipinski SA, eds. Biology, Phylogeny, and Classification of Coleoptera Warszawa. pp 779-1006.
57. Wild AL, Maddison DR (2008) Evaluating nuclear protein-coding genes for phylogenetic utility in the Coleoptera. Mol Phylogenet Evol 48: 877-891.
58. Whiting MF (2002b) Mecoptera is paraphyletic: multiple genes and phylogeny of Mecoptera and Siphonaptera. Zool Scr 31: 93-104.
59. Katoh K, Toh H (2008) Recent developments in the MAFFT multiple sequence alignment program. Briefings in bioinformatics. Available: http://dx.doi.org/10.1093/bib/bbn013. Accessed July 2009.
60. Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
61. Talavera G, Castresana J (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biology 56: 564-577.
62. McKenna DD, Farrell BD (2005) Molecular phylogenetics and evolution of host plant use in the Neotropical rolled leaf 'hispine' beetle genus Cephaloleia (Chevrolat) (Chrysomelidae: Cassidinae). Mol Phylogenet Evol 37: 117-131.
63. McKenna DD, Farrell BD (2006) Tropical forests are both evolutionary cradles and museums of leaf beetle diversity. Proc Natl Acad Sci USA 103: 10947-10951.
64. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
65. Ronquist A, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
66. Zwickl DJ (2006) Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, Univ. of Texas at Austin.
67. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
68. Posada D (2006) ModelTest Server: a web-based tool for the statistical selsection of models of nucleotide substitution online. Nucleic Acids Res 34: W700-W703.
69. Swofford DL PAUP*: Phylogenetic Analysis Using Parsimony (*and other Methods) v.4.0b10 (Sinauer, Sunderland MA).
70. Kuhner M, Felsenstein J (1994) A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol Biol Evol 11: 459-468.
71. Philippe H, Zhou Y, Brinkmann H, Rodrigue N, Delsuc F (2005) Heterotachy and long-branch attraction in phylogenetics. BMC Evol Biol 5: 50.
72. Nixon KC (1999) The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15: 407-414.
73. Rasnitsyn AP (2002) Cohors Scarabaeiformes Laicharting, 1781. The Holometabolans. In: Rasnitsyn AP, Quicke DLJ, eds. History of Insects. Dordrecht, The Netherlands: Kluwer. pp 157-159.
74. Kukalova-Peck J, Lawrence JF (2004) Relationships among coleopteran suborders and major endoneopteran lineages: Evidence from hind wing characters. Eur J Entomol 101: 95-144.
75. Krauss V, Pecyna M, Kurz K, Sass H (2005) Phylogenetic mapping of intron positions; A case study of translation initiation factor elF2γ. Mol Biol Evol 22: 74-84.
76. Savard J, Tautz D, Richards S, Weinstock GM, Gibbs RA, et al. (2006) Phylogenetic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of holometabolous insects. Genome Res 16: 1334-1338.
77. Zdobnov EM, Bork P (2006) Quantification of insect genome divergence. Trends Genet 23: 1.