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Volumn 25, Issue 4, 2010, Pages 224-232

Genomes as documents of evolutionary history

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANCESTRY; EVOLUTIONARY BIOLOGY; GENOME; PALEOENVIRONMENT; PHYLOGENETICS; POPULATION GENETICS; POPULATION SIZE; RECONSTRUCTION; STATISTICAL ANALYSIS;

EID: 77949616292     PISSN: 01695347     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tree.2009.09.007     Document Type: Review
Times cited : (55)

References (71)
  • 1
    • 0013776758 scopus 로고
    • Molecules as documents of evolutionary history
    • Zuckerkandl E., and Pauling L. Molecules as documents of evolutionary history. J. Theor. Biol. 8 (1965) 357-366
    • (1965) J. Theor. Biol. , vol.8 , pp. 357-366
    • Zuckerkandl, E.1    Pauling, L.2
  • 2
    • 46249095233 scopus 로고    scopus 로고
    • Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
    • Löytynoja A., and Goldman N. Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis. Science 320 (2008) 1632-1635
    • (2008) Science , vol.320 , pp. 1632-1635
    • Löytynoja, A.1    Goldman, N.2
  • 3
    • 38549135938 scopus 로고    scopus 로고
    • Alignment uncertainty and genomic analysis
    • Wong K.M., et al. Alignment uncertainty and genomic analysis. Science 319 (2008) 473-476
    • (2008) Science , vol.319 , pp. 473-476
    • Wong, K.M.1
  • 4
    • 0026079507 scopus 로고
    • An evolutionary model for maximum likelihood alignment of DNA sequences
    • Thorne J.L., et al. An evolutionary model for maximum likelihood alignment of DNA sequences. J. Mol. Evol. 33 (1991) 114-124
    • (1991) J. Mol. Evol. , vol.33 , pp. 114-124
    • Thorne, J.L.1
  • 5
    • 36549075072 scopus 로고    scopus 로고
    • Transducers: an emerging probabilistic framework for modeling indels on trees
    • Bradley R.K., and Holmes I. Transducers: an emerging probabilistic framework for modeling indels on trees. Bioinformatics 23 (2007) 3258-3262
    • (2007) Bioinformatics , vol.23 , pp. 3258-3262
    • Bradley, R.K.1    Holmes, I.2
  • 6
    • 0034791551 scopus 로고    scopus 로고
    • Evolutionary hmms: a Bayesian approach to multiple alignment
    • Holmes I., and Bruno W.J. Evolutionary hmms: a Bayesian approach to multiple alignment. Bioinformatics 17 (2001) 803-820
    • (2001) Bioinformatics , vol.17 , pp. 803-820
    • Holmes, I.1    Bruno, W.J.2
  • 7
    • 25444443637 scopus 로고    scopus 로고
    • Bayesian coestimation of phylogeny and sequence alignment
    • Lunter G., et al. Bayesian coestimation of phylogeny and sequence alignment. BMC Bioinformatics 6 (2005) 83
    • (2005) BMC Bioinformatics , vol.6 , pp. 83
    • Lunter, G.1
  • 8
    • 22844450838 scopus 로고    scopus 로고
    • Joint Bayesian estimation of alignment and phylogeny
    • Redelings B.D., and Suchard M.A. Joint Bayesian estimation of alignment and phylogeny. Syst. Biol. 54 (2005) 401-418
    • (2005) Syst. Biol. , vol.54 , pp. 401-418
    • Redelings, B.D.1    Suchard, M.A.2
  • 9
    • 67649240664 scopus 로고    scopus 로고
    • Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees
    • Liu K., et al. Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees. Science 324 (2009) 1561
    • (2009) Science , vol.324 , pp. 1561
    • Liu, K.1
  • 10
    • 52949150097 scopus 로고    scopus 로고
    • Probabilistic phylogenetic inference with insertions and deletions
    • Rivas E., and Eddy S.R. Probabilistic phylogenetic inference with insertions and deletions. PLoS Comp. Biol. 4 (2008) e1000172
    • (2008) PLoS Comp. Biol. , vol.4
    • Rivas, E.1    Eddy, S.R.2
  • 11
    • 34247340566 scopus 로고    scopus 로고
    • Incorporating indel information into phylogeny estimation for rapidly emerging pathogens
    • Redelings B.D., and Suchard M.A. Incorporating indel information into phylogeny estimation for rapidly emerging pathogens. BMC Evol. Biol. 7 (2007) 40
    • (2007) BMC Evol. Biol. , vol.7 , pp. 40
    • Redelings, B.D.1    Suchard, M.A.2
  • 12
    • 0036806280 scopus 로고    scopus 로고
    • Potential applications and pitfalls of Bayesian inference of phylogeny
    • Huelsenbeck J.P., et al. Potential applications and pitfalls of Bayesian inference of phylogeny. Syst. Biol. 51 (2002) 673-688
    • (2002) Syst. Biol. , vol.51 , pp. 673-688
    • Huelsenbeck, J.P.1
  • 13
    • 42449102610 scopus 로고    scopus 로고
    • How reliably can we predict the reliability of protein structure predictions?
    • Miklós I., et al. How reliably can we predict the reliability of protein structure predictions?. BMC Bioinformatics 9 (2008) 137
    • (2008) BMC Bioinformatics , vol.9 , pp. 137
    • Miklós, I.1
  • 14
    • 0027280998 scopus 로고
    • Strong conservation of non-coding sequences during vertebrates evolution: potential involvement in post-transcriptional regulation of gene expression
    • Duret L., et al. Strong conservation of non-coding sequences during vertebrates evolution: potential involvement in post-transcriptional regulation of gene expression. Nucleic Acids Res. 21 (1993) 2315-2322
    • (1993) Nucleic Acids Res. , vol.21 , pp. 2315-2322
    • Duret, L.1
  • 15
    • 36049018312 scopus 로고    scopus 로고
    • Discovery of functional elements in 12 drosophila genomes using evolutionary signatures
    • Stark A., et al. Discovery of functional elements in 12 drosophila genomes using evolutionary signatures. Nature 450 (2007) 219-232
    • (2007) Nature , vol.450 , pp. 219-232
    • Stark, A.1
  • 16
    • 43349091196 scopus 로고    scopus 로고
    • Combining statistical alignment and phylogenetic footprinting to detect regulatory elements
    • Satija R., et al. Combining statistical alignment and phylogenetic footprinting to detect regulatory elements. Bioinformatics 24 (2008) 1236-1242
    • (2008) Bioinformatics , vol.24 , pp. 1236-1242
    • Satija, R.1
  • 17
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison W.P. Gene trees in species trees. Syst. Biol. 46 (1997) 523-536
    • (1997) Syst. Biol. , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 18
    • 0242404116 scopus 로고    scopus 로고
    • Hierarchical phylogenetic models for analyzing multipartite sequence data
    • Suchard M.A., et al. Hierarchical phylogenetic models for analyzing multipartite sequence data. Syst. Biol. 52 (2003) 649-664
    • (2003) Syst. Biol. , vol.52 , pp. 649-664
    • Suchard, M.A.1
  • 19
    • 33646928341 scopus 로고    scopus 로고
    • Discordance of species trees with their most likely gene trees
    • Degnan J.H., and Rosenberg N.A. Discordance of species trees with their most likely gene trees. PLoS Genet. 2 (2006) e68
    • (2006) PLoS Genet. , vol.2
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 20
    • 65649131928 scopus 로고    scopus 로고
    • Gene tree discordance, phylogenetic inference and the multispecies coalescent
    • Degnan J.H., and Rosenberg N.A. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol. Evol. 24 (2009) 332-340
    • (2009) Trends Ecol. Evol. , vol.24 , pp. 332-340
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 21
    • 0032979748 scopus 로고    scopus 로고
    • Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach
    • Beerli P., and Felsenstein J. Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics 152 (1999) 763-773
    • (1999) Genetics , vol.152 , pp. 763-773
    • Beerli, P.1    Felsenstein, J.2
  • 22
    • 34548575126 scopus 로고    scopus 로고
    • Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions
    • Liu L., and Pearl D.K. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Syst. Biol. 56 (2007) 504-514
    • (2007) Syst. Biol. , vol.56 , pp. 504-514
    • Liu, L.1    Pearl, D.K.2
  • 23
    • 34249700809 scopus 로고    scopus 로고
    • Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers
    • Carstens B.C., and Knowles L.L. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers. Syst. Biol. 56 (2007) 400-411
    • (2007) Syst. Biol. , vol.56 , pp. 400-411
    • Carstens, B.C.1    Knowles, L.L.2
  • 24
    • 2442562450 scopus 로고    scopus 로고
    • Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution
    • Arvestad, L. et al. (2004) Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. In RECOMB04
    • (2004) RECOMB04
    • Arvestad, L.1
  • 25
    • 65249107239 scopus 로고    scopus 로고
    • Simultaneous Bayesian gene tree reconstruction and reconciliation analysis
    • Akerborg O., et al. Simultaneous Bayesian gene tree reconstruction and reconciliation analysis. Proc. Natl. Acad. Sci. U. S. A. 106 (2009) 5714-5719
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 5714-5719
    • Akerborg, O.1
  • 26
    • 33645310990 scopus 로고    scopus 로고
    • Protein molecular function prediction by Bayesian phylogenomics
    • Engelhardt B.E., et al. Protein molecular function prediction by Bayesian phylogenomics. PLoS Comput. Biol. 1 (2005) e45
    • (2005) PLoS Comput. Biol. , vol.1
    • Engelhardt, B.E.1
  • 27
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle W.F. Phylogenetic classification and the universal tree. Science 284 (1999) 2124-2129
    • (1999) Science , vol.284 , pp. 2124-2129
    • Doolittle, W.F.1
  • 28
    • 0042191905 scopus 로고    scopus 로고
    • Horizontal gene transfer: a critical view
    • Kurland C.G., et al. Horizontal gene transfer: a critical view. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 9658-9662
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 9658-9662
    • Kurland, C.G.1
  • 29
    • 1342271382 scopus 로고    scopus 로고
    • From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria
    • Lerat E., et al. From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria. PLoS Biol. 1 (2003) E19
    • (2003) PLoS Biol. , vol.1
    • Lerat, E.1
  • 30
    • 20444410815 scopus 로고    scopus 로고
    • Stochastic models for horizontal gene transfer: taking a random walk through tree space
    • Suchard M.A. Stochastic models for horizontal gene transfer: taking a random walk through tree space. Genetics 170 (2005) 419-431
    • (2005) Genetics , vol.170 , pp. 419-431
    • Suchard, M.A.1
  • 31
    • 0042629762 scopus 로고    scopus 로고
    • Towards identifying lateral gene transfer events
    • Addario-Berry, L. et al. (2003) Towards identifying lateral gene transfer events. In Pacific Symp. Biocomputing, pp. 279-290
    • (2003) Pacific Symp. Biocomputing , pp. 279-290
    • Addario-Berry, L.1
  • 33
    • 33745760575 scopus 로고    scopus 로고
    • Ancient horizontal gene transfer can benefit phylogenetic reconstruction
    • Huang J., and Gogarten J.P. Ancient horizontal gene transfer can benefit phylogenetic reconstruction. Trends Genet. 22 (2006) 361-366
    • (2006) Trends Genet. , vol.22 , pp. 361-366
    • Huang, J.1    Gogarten, J.P.2
  • 34
    • 0036143446 scopus 로고    scopus 로고
    • Genomes in flux: the evolution of archaeal and proteobacterial gene content
    • Snel B., et al. Genomes in flux: the evolution of archaeal and proteobacterial gene content. Genome Res. 12 (2002) 17-25
    • (2002) Genome Res. , vol.12 , pp. 17-25
    • Snel, B.1
  • 35
    • 3042840997 scopus 로고    scopus 로고
    • Computational inference of scenarios for alpha-proteobacterial genome evolution
    • Boussau B., et al. Computational inference of scenarios for alpha-proteobacterial genome evolution. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 9722-9727
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 9722-9727
    • Boussau, B.1
  • 36
    • 55449127787 scopus 로고    scopus 로고
    • Predicting functional gene links from phylogenetic-statistical analyses of whole genomes
    • Barker D., and Pagel M. Predicting functional gene links from phylogenetic-statistical analyses of whole genomes. PLoS Comput. Biol. 1 (2005) e3
    • (2005) PLoS Comput. Biol. , vol.1
    • Barker, D.1    Pagel, M.2
  • 37
    • 36549038087 scopus 로고    scopus 로고
    • Consequences of genome duplication
    • Sémon M., and Wolfe K.H. Consequences of genome duplication. Curr. Opin. Genet. Dev. 17 (2007) 505-512
    • (2007) Curr. Opin. Genet. Dev. , vol.17 , pp. 505-512
    • Sémon, M.1    Wolfe, K.H.2
  • 38
    • 33847253862 scopus 로고    scopus 로고
    • Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model
    • Hobolth A., et al. Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model. PLoS Genet. 3 (2007) e7
    • (2007) PLoS Genet. , vol.3
    • Hobolth, A.1
  • 39
    • 33846839390 scopus 로고    scopus 로고
    • Bayesian estimation of concordance among gene trees
    • Ané C., et al. Bayesian estimation of concordance among gene trees. Mol. Biol. Evol. 24 (2007) 412-426
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 412-426
    • Ané, C.1
  • 40
    • 20444394416 scopus 로고    scopus 로고
    • A Bayesian approach to the estimation of ancestral genome arrangements
    • Larget B., et al. A Bayesian approach to the estimation of ancestral genome arrangements. Mol. Phylogenet. Evol. 36 (2005) 214-223
    • (2005) Mol. Phylogenet. Evol. , vol.36 , pp. 214-223
    • Larget, B.1
  • 41
    • 48249144818 scopus 로고    scopus 로고
    • Dynamics of genome rearrangement in bacterial populations
    • Darling A.E., et al. Dynamics of genome rearrangement in bacterial populations. PLoS Genet. 4 (2008) e1000128
    • (2008) PLoS Genet. , vol.4
    • Darling, A.E.1
  • 42
    • 52449090559 scopus 로고    scopus 로고
    • Dupcar: reconstructing contiguous ancestral regions with duplications
    • Ma J., et al. Dupcar: reconstructing contiguous ancestral regions with duplications. J. Comput. Biol. 15 (2008) 1007-1027
    • (2008) J. Comput. Biol. , vol.15 , pp. 1007-1027
    • Ma, J.1
  • 43
    • 55549136564 scopus 로고    scopus 로고
    • The infinite sites model of genome evolution
    • Ma J., et al. The infinite sites model of genome evolution. Proc. Natl. Acad. Sci. U. S. A. 105 (2008) 14254-14261
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 14254-14261
    • Ma, J.1
  • 45
    • 0035400605 scopus 로고    scopus 로고
    • Chromosomal rearrangements and speciation
    • Rieseberg L. Chromosomal rearrangements and speciation. Trends Ecol. Evol. 16 (2001) 351-358
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 351-358
    • Rieseberg, L.1
  • 46
    • 0000309645 scopus 로고
    • Inversions in the third chromosome of wild races of Drosophila pseudoobscura, and their use in the study of the history of the species
    • Sturtevant A.H., and Dobzhansky T. Inversions in the third chromosome of wild races of Drosophila pseudoobscura, and their use in the study of the history of the species. Proc. Natl. Acad. Sci. U. S. A. 22 (1936) 448-450
    • (1936) Proc. Natl. Acad. Sci. U. S. A. , vol.22 , pp. 448-450
    • Sturtevant, A.H.1    Dobzhansky, T.2
  • 47
    • 38849157108 scopus 로고    scopus 로고
    • Paleogenomics in vertebrates, or the recovery of lost genomes from the mist of time
    • Muffato M., and Crollius H.R. Paleogenomics in vertebrates, or the recovery of lost genomes from the mist of time. Bioessays 30 (2008) 122-134
    • (2008) Bioessays , vol.30 , pp. 122-134
    • Muffato, M.1    Crollius, H.R.2
  • 49
    • 1842818736 scopus 로고    scopus 로고
    • Accurate identification of novel human genes through simultaneous gene prediction in human, mouse, and rat
    • Dewey C., et al. Accurate identification of novel human genes through simultaneous gene prediction in human, mouse, and rat. Genome Res. 14 (2004) 661-664
    • (2004) Genome Res. , vol.14 , pp. 661-664
    • Dewey, C.1
  • 50
    • 38949093003 scopus 로고    scopus 로고
    • Palaeotemperature trend for Precambrian life inferred from resurrected proteins
    • Gaucher E.A., et al. Palaeotemperature trend for Precambrian life inferred from resurrected proteins. Nature 451 (2008) 704-707
    • (2008) Nature , vol.451 , pp. 704-707
    • Gaucher, E.A.1
  • 51
    • 57749185463 scopus 로고    scopus 로고
    • Parallel adaptations to high temperatures in the Archaean eon
    • Boussau B., et al. Parallel adaptations to high temperatures in the Archaean eon. Nature 456 (2008) 942-945
    • (2008) Nature , vol.456 , pp. 942-945
    • Boussau, B.1
  • 52
    • 35248857403 scopus 로고    scopus 로고
    • Efficient likelihood computations with nonreversible models of evolution
    • Boussau B., and Gouy M. Efficient likelihood computations with nonreversible models of evolution. Syst. Biol. 55 (2006) 756-768
    • (2006) Syst. Biol. , vol.55 , pp. 756-768
    • Boussau, B.1    Gouy, M.2
  • 53
    • 33646745354 scopus 로고    scopus 로고
    • A likelihood approach to analysis of network data
    • Wiuf C., et al. A likelihood approach to analysis of network data. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 7566-7570
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 7566-7570
    • Wiuf, C.1
  • 54
    • 36949017519 scopus 로고    scopus 로고
    • Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum
    • Ratmann O., et al. Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum. PLoS Comput. Biol. 3 (2007) e230
    • (2007) PLoS Comput. Biol. , vol.3
    • Ratmann, O.1
  • 55
    • 38049136510 scopus 로고    scopus 로고
    • Reconstruction of ancestral protein interaction networks for the bZIP transcription factors
    • Pinney J.W., et al. Reconstruction of ancestral protein interaction networks for the bZIP transcription factors. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 20449-20453
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 20449-20453
    • Pinney, J.W.1
  • 56
    • 9544253891 scopus 로고    scopus 로고
    • Genome-scale models of microbial cells: evaluating the consequences of constraints
    • Price N.D., et al. Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat. Rev. Microbiol. 2 (2004) 886-897
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 886-897
    • Price, N.D.1
  • 57
    • 9744245452 scopus 로고    scopus 로고
    • Bayesian estimation of ancestral character states on phylogenies
    • Pagel M., et al. Bayesian estimation of ancestral character states on phylogenies. Syst. Biol. 53 (2004) 673-684
    • (2004) Syst. Biol. , vol.53 , pp. 673-684
    • Pagel, M.1
  • 58
    • 40049098103 scopus 로고    scopus 로고
    • Integrating GIS-based environmental data into evolutionary biology
    • Kozak K.H., et al. Integrating GIS-based environmental data into evolutionary biology. Trends Ecol. Evol. 23 (2008) 141-148
    • (2008) Trends Ecol. Evol. , vol.23 , pp. 141-148
    • Kozak, K.H.1
  • 60
    • 21444455535 scopus 로고    scopus 로고
    • Dual multiple change-point model leads to more accurate recombination detection
    • Minin V.N., et al. Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics 21 (2005) 3034-3042
    • (2005) Bioinformatics , vol.21 , pp. 3034-3042
    • Minin, V.N.1
  • 61
    • 0242354129 scopus 로고    scopus 로고
    • The origin of new genes: glimpses from the young and old
    • Long M., et al. The origin of new genes: glimpses from the young and old. Nat. Rev. Genet. 4 (2003) 865-875
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 865-875
    • Long, M.1
  • 62
    • 0014800108 scopus 로고
    • Distinguishing homologous from analogous proteins
    • Fitch W.M. Distinguishing homologous from analogous proteins. Syst. Zool. 19 (1970) 99-113
    • (1970) Syst. Zool. , vol.19 , pp. 99-113
    • Fitch, W.M.1
  • 63
    • 33847065899 scopus 로고    scopus 로고
    • Reciprocal gene loss between tetraodon and zebrafish after whole genome duplication in their ancestor
    • Sémon M., and Wolfe K.H. Reciprocal gene loss between tetraodon and zebrafish after whole genome duplication in their ancestor. Trends Genet. 23 (2007) 108-112
    • (2007) Trends Genet. , vol.23 , pp. 108-112
    • Sémon, M.1    Wolfe, K.H.2
  • 64
    • 19444384196 scopus 로고    scopus 로고
    • Should phylogenetic models be trying to "fit an elephant"?
    • Steel M. Should phylogenetic models be trying to "fit an elephant"?. Trends Genet. 21 (2005) 307-309
    • (2005) Trends Genet. , vol.21 , pp. 307-309
    • Steel, M.1
  • 65
    • 65649118549 scopus 로고    scopus 로고
    • Many-core algorithms for statistical phylogenetics
    • Suchard M.A., and Rambaut A. Many-core algorithms for statistical phylogenetics. Bioinformatics 25 (2009) 1370-1376
    • (2009) Bioinformatics , vol.25 , pp. 1370-1376
    • Suchard, M.A.1    Rambaut, A.2
  • 66
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • Lartillot N., and Philippe H. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol. Biol. Evol. 21 (2004) 1095-1109
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 67
    • 0034983646 scopus 로고    scopus 로고
    • Bayesian selection of continuous-time Markov chain evolutionary models
    • Suchard M.A., et al. Bayesian selection of continuous-time Markov chain evolutionary models. Mol. Biol. Evol. 18 (2001) 1001-1013
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1001-1013
    • Suchard, M.A.1
  • 68
    • 0034077901 scopus 로고    scopus 로고
    • A compound Poisson process for relaxing the molecular clock
    • Huelsenbeck J.P., et al. A compound Poisson process for relaxing the molecular clock. Genetics 154 (2000) 1879-1892
    • (2000) Genetics , vol.154 , pp. 1879-1892
    • Huelsenbeck, J.P.1
  • 69
    • 53749107937 scopus 로고    scopus 로고
    • Statalign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees
    • Novák A., et al. Statalign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees. Bioinformatics 24 (2008) 2403-2404
    • (2008) Bioinformatics , vol.24 , pp. 2403-2404
    • Novák, A.1
  • 70
    • 34548443728 scopus 로고    scopus 로고
    • Simulfold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework
    • Meyer I.M., and Miklós I. Simulfold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework. PLoS Comput. Biol. 3 (2007) e149
    • (2007) PLoS Comput. Biol. , vol.3
    • Meyer, I.M.1    Miklós, I.2
  • 71
    • 1042304216 scopus 로고    scopus 로고
    • Ape: Analyses of phylogenetics and evolution in R language
    • Paradis E., et al. Ape: Analyses of phylogenetics and evolution in R language. Bioinformatics 20 (2004) 289-290
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.