메뉴 건너뛰기




Volumn 5, Issue , 2014, Pages

Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RNA 16S; TRANSCRIPTOME; IL10 PROTEIN, MOUSE; INTERLEUKIN 10;

EID: 84907363534     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms5724     Document Type: Article
Times cited : (270)

References (66)
  • 1
    • 84871454511 scopus 로고    scopus 로고
    • Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk
    • Holmes, E., Li, J. V., Marchesi, J. R. & Nicholson, J. K. Gut microbiota composition and activity in relation to host metabolic phenotype and disease risk. Cell Metab. 16, 559-564 (2012).
    • (2012) Cell Metab. , vol.16 , pp. 559-564
    • Holmes, E.1    Li, J.V.2    Marchesi, J.R.3    Nicholson, J.K.4
  • 2
    • 84877248514 scopus 로고    scopus 로고
    • The complex interplay between inflammation, the microbiota and colorectal cancer
    • Arthur, J. C. & Jobin, C. The complex interplay between inflammation, the microbiota and colorectal cancer. Gut Microbes 4, 253-258 (2013).
    • (2013) Gut Microbes , vol.4 , pp. 253-258
    • Arthur, J.C.1    Jobin, C.2
  • 3
    • 84873372079 scopus 로고    scopus 로고
    • NOD2-mediated dysbiosis predisposes mice to transmissible colitis and colorectal cancer
    • Couturier-Maillard, A. et al. NOD2-mediated dysbiosis predisposes mice to transmissible colitis and colorectal cancer. J. Clin. Invest. 123, 700-711 (2013).
    • (2013) J. Clin. Invest. , vol.123 , pp. 700-711
    • Couturier-Maillard, A.1
  • 4
    • 84891585929 scopus 로고    scopus 로고
    • The gut microbiome modulates colon tumorigenesis
    • Zackular, J. P. et al. The gut microbiome modulates colon tumorigenesis. mBio 4, e00692-13 (2013).
    • (2013) mBio , vol.4
    • Zackular, J.P.1
  • 5
    • 84888638819 scopus 로고    scopus 로고
    • The microbiome and cancer
    • Schwabe, R. F. & Jobin, C. The microbiome and cancer. Nat. Rev. Cancer 13, 800-812 (2013).
    • (2013) Nat. Rev. Cancer , vol.13 , pp. 800-812
    • Schwabe, R.F.1    Jobin, C.2
  • 6
    • 84867192879 scopus 로고    scopus 로고
    • Intestinal inflammation targets cancer-inducing activity of the microbiota
    • Arthur, J. C. et al. Intestinal inflammation targets cancer-inducing activity of the microbiota. Science 338, 120-123 (2012).
    • (2012) Science , vol.338 , pp. 120-123
    • Arthur, J.C.1
  • 7
    • 84882354326 scopus 로고    scopus 로고
    • Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment
    • Kostic, A. D. et al. Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment. Cell Host Microbe 14, 207-215 (2013).
    • (2013) Cell Host Microbe , vol.14 , pp. 207-215
    • Kostic, A.D.1
  • 8
    • 84882334105 scopus 로고    scopus 로고
    • Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/beta-catenin signaling via its FadA adhesin
    • Rubinstein, M. R. et al. Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/beta-catenin signaling via its FadA adhesin. Cell Host Microbe 14, 195-206 (2013).
    • (2013) Cell Host Microbe , vol.14 , pp. 195-206
    • Rubinstein, M.R.1
  • 9
    • 84866146940 scopus 로고    scopus 로고
    • Diversity, stability and resilience of the human gut microbiota
    • Lozupone, C. A., Stombaugh, J. I., Gordon, J. I., Jansson, J. K. & Knight, R. Diversity, stability and resilience of the human gut microbiota. Nature 489, 220-230 (2012).
    • (2012) Nature , vol.489 , pp. 220-230
    • Lozupone, C.A.1    Stombaugh, J.I.2    Gordon, J.I.3    Jansson, J.K.4    Knight, R.5
  • 10
    • 84888633713 scopus 로고    scopus 로고
    • Inflammation-induced cancer: Crosstalk between tumours, immune cells and microorganisms
    • Elinav, E. et al. Inflammation-induced cancer: crosstalk between tumours, immune cells and microorganisms. Nat. Rev. Cancer 13, 759-771 (2013).
    • (2013) Nat. Rev. Cancer , vol.13 , pp. 759-771
    • Elinav, E.1
  • 11
    • 84866549438 scopus 로고    scopus 로고
    • Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
    • Morgan, X. C. et al. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biol. 13, R79 (2012).
    • (2012) Genome Biol. , vol.13
    • Morgan, X.C.1
  • 12
    • 0031758230 scopus 로고    scopus 로고
    • Presence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease
    • Darfeuille-Michaud, A. et al. Presence of adherent Escherichia coli strains in ileal mucosa of patients with Crohn's disease. Gastroenterology 115, 1405-1413 (1998).
    • (1998) Gastroenterology , vol.115 , pp. 1405-1413
    • Darfeuille-Michaud, A.1
  • 13
    • 3242737791 scopus 로고    scopus 로고
    • Enhanced Escherichia coli adherence and invasion in Crohn's disease and colon cancer
    • Martin, H. M. et al. Enhanced Escherichia coli adherence and invasion in Crohn's disease and colon cancer. Gastroenterology 127, 80-93 (2004).
    • (2004) Gastroenterology , vol.127 , pp. 80-93
    • Martin, H.M.1
  • 14
    • 77954821323 scopus 로고    scopus 로고
    • Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas
    • Shen, X. J. et al. Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas. Gut Microbes 1, 138-147 (2010).
    • (2010) Gut Microbes , vol.1 , pp. 138-147
    • Shen, X.J.1
  • 15
    • 0031928730 scopus 로고    scopus 로고
    • Association between intraepithelial Escherichia coli and colorectal cancer
    • Swidsinski, A. et al. Association between intraepithelial Escherichia coli and colorectal cancer. Gastroenterology 115, 281-286 (1998).
    • (1998) Gastroenterology , vol.115 , pp. 281-286
    • Swidsinski, A.1
  • 16
    • 84874007506 scopus 로고    scopus 로고
    • High prevalence of mucosa-associated E. coli producing cyclomodulin and genotoxin in colon cancer
    • Buc, E. et al. High prevalence of mucosa-associated E. coli producing cyclomodulin and genotoxin in colon cancer. PLoS ONE 8, e56964 (2013).
    • (2013) PLoS ONE , vol.8
    • Buc, E.1
  • 17
    • 84897964236 scopus 로고    scopus 로고
    • Colonic mucosa-associated diffusely adherent afaC + Escherichia coli expressing lpfA and pks are increased in inflammatory bowel disease and colon cancer
    • Prorok-Hamon, M. et al. Colonic mucosa-associated diffusely adherent afaC + Escherichia coli expressing lpfA and pks are increased in inflammatory bowel disease and colon cancer. Gut 63, 761-770 (2014).
    • (2014) Gut , vol.63 , pp. 761-770
    • Prorok-Hamon, M.1
  • 18
    • 33747137269 scopus 로고    scopus 로고
    • Escherichia coli induces DNA double-strand breaks in eukaryotic cells
    • Nougayrede, J. P. et al. Escherichia coli induces DNA double-strand breaks in eukaryotic cells. Science 313, 848-851 (2006).
    • (2006) Science , vol.313 , pp. 848-851
    • Nougayrede, J.P.1
  • 19
    • 77954730486 scopus 로고    scopus 로고
    • Escherichia coli induces DNA damage in vivo and triggers genomic instability in mammalian cells
    • Cuevas-Ramos, G. et al. Escherichia coli induces DNA damage in vivo and triggers genomic instability in mammalian cells. Proc. Natl Acad. Sci. USA 107, 11537-11542 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 11537-11542
    • Cuevas-Ramos, G.1
  • 20
    • 84868607652 scopus 로고    scopus 로고
    • Genotoxicity of Escherichia coli Nissle 1917 strain cannot be dissociated from its probiotic activity
    • Olier, M. et al. Genotoxicity of Escherichia coli Nissle 1917 strain cannot be dissociated from its probiotic activity. Gut Microbes 3, 501-509 (2012).
    • (2012) Gut Microbes , vol.3 , pp. 501-509
    • Olier, M.1
  • 21
    • 80054806900 scopus 로고    scopus 로고
    • Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota
    • Thiennimitr, P. et al. Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota. Proc. Natl Acad. Sci. USA 108, 17480-17485 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 17480-17485
    • Thiennimitr, P.1
  • 22
    • 84873513423 scopus 로고    scopus 로고
    • Host-derived nitrate boosts growth of E. coli in the inflamed gut
    • Winter, S. E. et al. Host-derived nitrate boosts growth of E. coli in the inflamed gut. Science 339, 708-711 (2013).
    • (2013) Science , vol.339 , pp. 708-711
    • Winter, S.E.1
  • 23
    • 84886723193 scopus 로고    scopus 로고
    • Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model
    • McCafferty, J. et al. Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model. ISME J. 7, 2116-2125 (2013).
    • (2013) ISME J. , vol.7 , pp. 2116-2125
    • McCafferty, J.1
  • 24
    • 84880199410 scopus 로고    scopus 로고
    • Pathview: An R/Bioconductor package for pathway-based data integration and visualization
    • Luo, W. & Brouwer, C. Pathview: an R/Bioconductor package for pathway-based data integration and visualization. Bioinformatics 29, 1830-1831 (2013).
    • (2013) Bioinformatics , vol.29 , pp. 1830-1831
    • Luo, W.1    Brouwer, C.2
  • 25
    • 80051486126 scopus 로고    scopus 로고
    • Antigen-presenting cell production of IL-10 inhibits T-helper 1 and 17 cell responses and suppresses colitis in mice
    • Liu, B., Tonkonogy, S. L. & Sartor, R. B. Antigen-presenting cell production of IL-10 inhibits T-helper 1 and 17 cell responses and suppresses colitis in mice. Gastroenterology 141, 653-662 (2011).
    • (2011) Gastroenterology , vol.141 , pp. 653-662
    • Liu, B.1    Tonkonogy, S.L.2    Sartor, R.B.3
  • 26
    • 79952763661 scopus 로고    scopus 로고
    • Succession of microbial consortia in the developing infant gut microbiome
    • Koenig, J. E. et al. Succession of microbial consortia in the developing infant gut microbiome. Proc. Natl Acad. Sci. USA 108(Suppl 1): 4578-4585 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , Issue.SUPPL. 1 , pp. 4578-4585
    • Koenig, J.E.1
  • 27
    • 84861139714 scopus 로고    scopus 로고
    • Ecological succession of bacterial communities during conventionalization of germ-free mice
    • Gillilland, 3rd M. G. et al. Ecological succession of bacterial communities during conventionalization of germ-free mice. Appl. Environ. Microbiol. 78, 2359-2366 (2012).
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 2359-2366
    • Gillilland III, M.G.1
  • 28
    • 77956569409 scopus 로고    scopus 로고
    • Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis
    • Garrett, W. S. et al. Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis. Cell Host Microbe 8, 292-300 (2010).
    • (2010) Cell Host Microbe , vol.8 , pp. 292-300
    • Garrett, W.S.1
  • 29
    • 84865134857 scopus 로고    scopus 로고
    • Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice
    • Carvalho, F. A. et al. Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice. Cell Host Microbe 12, 139-152 (2012).
    • (2012) Cell Host Microbe , vol.12 , pp. 139-152
    • Carvalho, F.A.1
  • 30
    • 84893560224 scopus 로고    scopus 로고
    • Intestinal microbial ecology and environmental factors affecting necrotizing enterocolitis
    • Torrazza, R. M. et al. Intestinal microbial ecology and environmental factors affecting necrotizing enterocolitis. PLoS ONE 8, e83304 (2013).
    • (2013) PLoS ONE , vol.8
    • Torrazza, R.M.1
  • 31
    • 34447104759 scopus 로고    scopus 로고
    • Induction of inducible nitric oxide synthase: A protective mechanism in colitis-induced adenocarcinoma
    • Zhang, R., Ma, A., Urbanski, S. J. & McCafferty, D. M. Induction of inducible nitric oxide synthase: a protective mechanism in colitis-induced adenocarcinoma. Carcinogenesis 28, 1122-1130 (2007).
    • (2007) Carcinogenesis , vol.28 , pp. 1122-1130
    • Zhang, R.1    Ma, A.2    Urbanski, S.J.3    McCafferty, D.M.4
  • 32
    • 0141731259 scopus 로고    scopus 로고
    • CD4(+)CD25(+) regulatory lymphocytes require interleukin 10 to interrupt colon carcinogenesis in mice
    • Erdman, S. E. et al. CD4(+)CD25(+) regulatory lymphocytes require interleukin 10 to interrupt colon carcinogenesis in mice. Cancer Res. 63, 6042-6050 (2003).
    • (2003) Cancer Res. , vol.63 , pp. 6042-6050
    • Erdman, S.E.1
  • 33
    • 0035953308 scopus 로고    scopus 로고
    • IFNgamma and lymphocytes prevent primary tumour development and shape tumour immunogenicity
    • Shankaran, V. et al. IFNgamma and lymphocytes prevent primary tumour development and shape tumour immunogenicity. Nature 410, 1107-1111 (2001).
    • (2001) Nature , vol.410 , pp. 1107-1111
    • Shankaran, V.1
  • 34
    • 80054846602 scopus 로고    scopus 로고
    • Chronic intestinal inflammation induces stress-response genes in commensal Escherichia coli
    • Patwa, L. G. et al. Chronic intestinal inflammation induces stress-response genes in commensal Escherichia coli. Gastroenterology 141, 1842-1851 (2011).
    • (2011) Gastroenterology , vol.141 , pp. 1842-1851
    • Patwa, L.G.1
  • 35
    • 55949120483 scopus 로고    scopus 로고
    • The two-component network and the general stress sigma factor RpoS (sigma S) in Escherichia coli
    • Hengge, R. The two-component network and the general stress sigma factor RpoS (sigma S) in Escherichia coli. Adv. Exp. Med. Biol. 631, 40-53 (2008).
    • (2008) Adv. Exp. Med. Biol. , vol.631 , pp. 40-53
    • Hengge, R.1
  • 36
    • 55949119280 scopus 로고    scopus 로고
    • The roles of two-component systems in virulence of pathogenic Escherichia coli and Shigella spp
    • Tobe, T. The roles of two-component systems in virulence of pathogenic Escherichia coli and Shigella spp. Adv. Exp. Med. Biol. 631, 189-199 (2008).
    • (2008) Adv. Exp. Med. Biol. , vol.631 , pp. 189-199
    • Tobe, T.1
  • 37
    • 84870208079 scopus 로고    scopus 로고
    • Second messenger regulation of biofilm formation: Breakthroughs in understanding c-di-GMP effector systems
    • Boyd, C. D. & O'Toole, G. A. Second messenger regulation of biofilm formation: breakthroughs in understanding c-di-GMP effector systems. Annu. Rev. Cell Dev. Biol. 28, 439-462 (2012).
    • (2012) Annu. Rev. Cell Dev. Biol. , vol.28 , pp. 439-462
    • Boyd, C.D.1    O'Toole, G.A.2
  • 38
    • 33644517930 scopus 로고    scopus 로고
    • Bacterial small-molecule signaling pathways
    • Camilli, A. & Bassler, B. L. Bacterial small-molecule signaling pathways. Science 311, 1113-1116 (2006).
    • (2006) Science , vol.311 , pp. 1113-1116
    • Camilli, A.1    Bassler, B.L.2
  • 39
    • 84906944891 scopus 로고    scopus 로고
    • Mild gut inflammation modulates the proteome of intestinal Escherichia coli
    • Schumann, S. et al. Mild gut inflammation modulates the proteome of intestinal Escherichia coli. Environ. Microbiol. http://onlinelibrary.wiley.com/ doi/10.1111/1462-2920.12192/abstractdoi: (2013).
    • (2013) Environ. Microbiol.
    • Schumann, S.1
  • 40
    • 84891736162 scopus 로고    scopus 로고
    • Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis
    • Johansson, M. E. et al. Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis. Gut 63, 281-291 (2014).
    • (2014) Gut , vol.63 , pp. 281-291
    • Johansson, M.E.1
  • 41
    • 34047167850 scopus 로고    scopus 로고
    • Comparative study of the intestinal mucus barrier in normal and inflamed colon
    • Swidsinski, A. et al. Comparative study of the intestinal mucus barrier in normal and inflamed colon. Gut 56, 343-350 (2007).
    • (2007) Gut , vol.56 , pp. 343-350
    • Swidsinski, A.1
  • 42
    • 9144231385 scopus 로고    scopus 로고
    • Interleukin 10-deficient mice exhibit defective colonic Muc2 synthesis before and after induction of colitis by commensal bacteria
    • Schwerbrock, N. M. et al. Interleukin 10-deficient mice exhibit defective colonic Muc2 synthesis before and after induction of colitis by commensal bacteria. Inflamm. Bowel Dis. 10, 811-823 (2004).
    • (2004) Inflamm. Bowel Dis. , vol.10 , pp. 811-823
    • Schwerbrock, N.M.1
  • 43
    • 84866461477 scopus 로고    scopus 로고
    • Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice
    • Ubeda, C. et al. Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice. J. Exp. Med. 209, 1445-1456 (2012).
    • (2012) J. Exp. Med. , vol.209 , pp. 1445-1456
    • Ubeda, C.1
  • 44
    • 67650299380 scopus 로고    scopus 로고
    • Modulation of the intestinal microbiota alters colitisassociated colorectal cancer susceptibility
    • Uronis, J. M. et al. Modulation of the intestinal microbiota alters colitisassociated colorectal cancer susceptibility. PLoS ONE 4, e6026 (2009).
    • (2009) PLoS ONE , vol.4
    • Uronis, J.M.1
  • 45
    • 17144383927 scopus 로고    scopus 로고
    • Variable phenotypes of enterocolitis in interleukin 10-deficient mice monoassociated with two different commensal bacteria
    • Kim, S. C. et al. Variable phenotypes of enterocolitis in interleukin 10-deficient mice monoassociated with two different commensal bacteria. Gastroenterology 128, 891-906 (2005).
    • (2005) Gastroenterology , vol.128 , pp. 891-906
    • Kim, S.C.1
  • 47
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S. F. et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 48
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q., Garrity, G. M., Tiedje, J. M. & Cole, J. R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267 (2007).
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 49
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 50
    • 34548785562 scopus 로고    scopus 로고
    • Expression analysis of the colibactin gene cluster coding for a novel polyketide in Escherichia coli
    • Homburg, S., Oswald, E., Hacker, J. & Dobrindt, U. Expression analysis of the colibactin gene cluster coding for a novel polyketide in Escherichia coli. FEMS Microbiol. Lett. 275, 255-262 (2007).
    • (2007) FEMS Microbiol. Lett. , vol.275 , pp. 255-262
    • Homburg, S.1    Oswald, E.2    Hacker, J.3    Dobrindt, U.4
  • 51
    • 84856534859 scopus 로고    scopus 로고
    • Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
    • Castellarin, M. et al. Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Res. 22, 299-306 (2012).
    • (2012) Genome Res. , vol.22 , pp. 299-306
    • Castellarin, M.1
  • 52
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 53
    • 84864440400 scopus 로고    scopus 로고
    • Metagenomic microbial community profiling using unique clade-specific marker genes
    • Segata, N. et al. Metagenomic microbial community profiling using unique clade-specific marker genes. Nat. Methods 9, 811-814 (2012).
    • (2012) Nat. Methods , vol.9 , pp. 811-814
    • Segata, N.1
  • 54
    • 78650050018 scopus 로고    scopus 로고
    • Scaffolding a Caenorhabditis nematode genome with RNA-seq
    • Mortazavi, A. et al. Scaffolding a Caenorhabditis nematode genome with RNA-seq. Genome Res. 20, 1740-1747 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1740-1747
    • Mortazavi, A.1
  • 55
    • 80054913451 scopus 로고    scopus 로고
    • FLASH: Fast length adjustment of short reads to improve genome assemblies
    • Magoc, T. & Salzberg, S. L. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27, 2957-2963 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 2957-2963
    • Magoc, T.1    Salzberg, S.L.2
  • 56
    • 84865176493 scopus 로고    scopus 로고
    • Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
    • Pell, J. et al. Scaling metagenome sequence assembly with probabilistic de Bruijn graphs. Proc. Natl Acad. Sci. USA 109, 13272-13277 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 13272-13277
    • Pell, J.1
  • 57
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies, M. et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437, 376-380 (2005).
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1
  • 58
    • 84901417347 scopus 로고    scopus 로고
    • Prokka: Rapid prokaryotic genome annotation
    • Seemann, T. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30, 2068-2069 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 2068-2069
    • Seemann, T.1
  • 59
    • 84883644707 scopus 로고    scopus 로고
    • Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
    • Rapaport, F. et al. Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data. Genome Biol. 14, R95 (2013).
    • (2013) Genome Biol. , vol.14
    • Rapaport, F.1
  • 60
    • 84893242996 scopus 로고    scopus 로고
    • RNA-seq differential expression studies: More sequence, or more replication?
    • Liu, Y., Zhou, J. & White, K. P. RNA-seq differential expression studies: more sequence, or more replication? Bioinformatics 30, 301-304 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 301-304
    • Liu, Y.1    Zhou, J.2    White, K.P.3
  • 61
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M. D., McCarthy, D. J. & Smyth, G. K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 62
    • 84881504578 scopus 로고    scopus 로고
    • Computational analysis of bacterial RNA-Seq data
    • McClure, R. et al. Computational analysis of bacterial RNA-Seq data. Nucleic Acids Res. 41, e140 (2013).
    • (2013) Nucleic Acids Res. , vol.41
    • McClure, R.1
  • 64
    • 84891765377 scopus 로고    scopus 로고
    • DOOR 2.0: Presenting operons and their functions through dynamic and integrated views
    • Mao, X. et al. DOOR 2.0: presenting operons and their functions through dynamic and integrated views. Nucleic Acids Res. 42, D654-D659 (2014).
    • (2014) Nucleic Acids Res. , vol.42
    • Mao, X.1
  • 65
    • 70350439157 scopus 로고    scopus 로고
    • Genetic structure and distribution of the colibactin genomic island among members of the family Enterobacteriaceae
    • Putze, J. et al. Genetic structure and distribution of the colibactin genomic island among members of the family Enterobacteriaceae . Infect. Immun. 77, 4696-4703 (2009).
    • (2009) Infect. Immun. , vol.77 , pp. 4696-4703
    • Putze, J.1
  • 66
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R Stat. Soc. Ser. B 57, 289-300 (1995).
    • (1995) J. R Stat. Soc. Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.