-
1
-
-
79955484976
-
The spatial and temporal organization of ubiquitin networks
-
Grabbe, C., Husnjak, K., and Dikic, I. (2011) The spatial and temporal organization of ubiquitin networks. Nat. Rev. Mol. Cell Biol. 12, 295-307
-
(2011)
Nat. Rev. Mol. Cell Biol
, vol.12
, pp. 295-307
-
-
Grabbe, C.1
Husnjak, K.2
Dikic, I.3
-
2
-
-
67349256160
-
Ubiquitin-like protein activation by E1 enzymes: The apex for downstream signalling pathways
-
Schulman, B. A., and Harper, J. W. (2009) Ubiquitin-like protein activation by E1 enzymes: the apex for downstream signalling pathways. Nat. Rev. Mol. Cell Biol. 10, 319-331
-
(2009)
Nat. Rev. Mol. Cell Biol
, vol.10
, pp. 319-331
-
-
Schulman, B.A.1
Harper, J.W.2
-
3
-
-
70350461507
-
Building ubiquitin chains: E2 enzymes at work
-
Ye, Y., and Rape, M. (2009) Building ubiquitin chains: E2 enzymes at work. Nat. Rev. Mol. Cell Biol. 10, 755-764
-
(2009)
Nat. Rev. Mol. Cell Biol
, vol.10
, pp. 755-764
-
-
Ye, Y.1
Rape, M.2
-
4
-
-
84856708350
-
RINGs hold the key to ubiquitin transfer
-
Budhidarmo, R., Nakatani, Y., and Day, C. L. (2012) RINGs hold the key to ubiquitin transfer. Trends Biochem. Sci. 37, 58-65
-
(2012)
Trends Biochem. Sci
, vol.37
, pp. 58-65
-
-
Budhidarmo, R.1
Nakatani, Y.2
Day, C.L.3
-
5
-
-
84890176335
-
RING-type E3 ligases: Master manipulators of E2 ubiquitin-conjugating enzymes and ubiquitination
-
Metzger, M. B., Pruneda, J. N., Klevit, R. E., and Weissman, A. M. (2014) RING-type E3 ligases: master manipulators of E2 ubiquitin-conjugating enzymes and ubiquitination. Biochim. Biophys. Acta 1843, 47-60
-
(2014)
Biochim. Biophys. Acta
, vol.1843
, pp. 47-60
-
-
Metzger, M.B.1
Pruneda, J.N.2
Klevit, R.E.3
Weissman, A.M.4
-
6
-
-
33750555919
-
Ubiquitin-binding domains
-
Hurley, J. H., Lee, S., and Prag, G. (2006) Ubiquitin-binding domains. Biochem. J. 399, 361-372
-
(2006)
Biochem. J
, vol.399
, pp. 361-372
-
-
Hurley, J.H.1
Lee, S.2
Prag, G.3
-
7
-
-
34250375116
-
E3-independent monoubiquitination of ubiquitin-binding proteins
-
Hoeller, D., Hecker, C. M., Wagner, S., Rogov, V., Dötsch, V., and Dikic, I. (2007) E3-independent monoubiquitination of ubiquitin-binding proteins. Mol. Cell 26, 891-898
-
(2007)
Mol. Cell
, vol.26
, pp. 891-898
-
-
Hoeller, D.1
Hecker, C.M.2
Wagner, S.3
Rogov, V.4
Dötsch, V.5
Dikic, I.6
-
8
-
-
31044437051
-
The activity of a human endoplasmic reticulum-associated degradation E3, gp78, requires its Cue domain, RING finger, and an E2- binding site
-
Chen, B., Mariano, J., Tsai, Y. C., Chan, A. H., Cohen, M., and Weissman, A. M. (2006) The activity of a human endoplasmic reticulum-associated degradation E3, gp78, requires its Cue domain, RING finger, and an E2- binding site. Proc. Natl. Acad. Sci. U.S.A. 103, 341-346
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 341-346
-
-
Chen, B.1
Mariano, J.2
Tsai, Y.C.3
Chan, A.H.4
Cohen, M.5
Weissman, A.M.6
-
9
-
-
84878209042
-
Ubiquitin binding by a CUE domain regulates ubiquitin chain formation by ERAD E3 ligases
-
Bagola, K., von Delbrück, M., Dittmar, G., Scheffner, M., Ziv, I., Glickman, M. H., Ciechanover, A., and Sommer, T. (2013) Ubiquitin binding by a CUE domain regulates ubiquitin chain formation by ERAD E3 ligases. Mol. Cell 50, 528-539
-
(2013)
Mol. Cell
, vol.50
, pp. 528-539
-
-
Bagola, K.1
Von Delbrück, M.2
Dittmar, G.3
Scheffner, M.4
Ziv, I.5
Glickman, M.H.6
Ciechanover, A.7
Sommer, T.8
-
10
-
-
79953310074
-
Structure and function of a HECT domain ubiquitin-binding site
-
Kim, H. C., Steffen, A. M., Oldham, M. L., Chen, J., and Huibregtse, J. M. (2011) Structure and function of a HECT domain ubiquitin-binding site. EMBO Rep. 12, 334-341
-
(2011)
EMBO Rep
, vol.12
, pp. 334-341
-
-
Kim, H.C.1
Steffen, A.M.2
Oldham, M.L.3
Chen, J.4
Huibregtse, J.M.5
-
11
-
-
79953325889
-
Structure of the HECT:ubiquitin complex and its role in ubiquitin chain elongation
-
Maspero, E., Mari, S., Valentini, E., Musacchio, A., Fish, A., Pasqualato, S., and Polo, S. (2011) Structure of the HECT:ubiquitin complex and its role in ubiquitin chain elongation. EMBO Rep. 12, 342-349
-
(2011)
EMBO Rep
, vol.12
, pp. 342-349
-
-
Maspero, E.1
Mari, S.2
Valentini, E.3
Musacchio, A.4
Fish, A.5
Pasqualato, S.6
Polo, S.7
-
12
-
-
84867096523
-
The E3 ligase HOIP specifies linear ubiquitin chain assembly through its RING-IBR-RING domain and the unique LDD extension
-
Smit, J. J., Monteferrario, D., Noordermeer, S. M., van Dijk, W. J., van der Reijden, B. A., and Sixma, T. K. (2012) The E3 ligase HOIP specifies linear ubiquitin chain assembly through its RING-IBR-RING domain and the unique LDD extension. EMBO J. 31, 3833-3844
-
(2012)
EMBO J
, vol.31
, pp. 3833-3844
-
-
Smit, J.J.1
Monteferrario, D.2
Noordermeer, S.M.3
Van Dijk, W.J.4
Van Der Reijden, B.A.5
Sixma, T.K.6
-
13
-
-
84888034624
-
Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP
-
Stieglitz, B., Rana, R. R., Koliopoulos, M. G., Morris-Davies, A. C., Schaeffer, V., Christodoulou, E., Howell, S., Brown, N. R., Dikic, I., and Rittinger, K. (2013) Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP. Nature 503, 422-426
-
(2013)
Nature
, vol.503
, pp. 422-426
-
-
Stieglitz, B.1
Rana, R.R.2
Koliopoulos, M.G.3
Morris-Davies, A.C.4
Schaeffer, V.5
Christodoulou, E.6
Howell, S.7
Brown, N.R.8
Dikic, I.9
Rittinger, K.10
-
14
-
-
77954930632
-
IAPs: From caspase inhibitors to modulators of NF-κB, inflammation and cancer
-
Gyrd-Hansen, M., and Meier, P. (2010) IAPs: from caspase inhibitors to modulators of NF-κB, inflammation and cancer. Nat. Rev. Cancer 10, 561-574
-
(2010)
Nat. Rev. Cancer
, vol.10
, pp. 561-574
-
-
Gyrd-Hansen, M.1
Meier, P.2
-
15
-
-
80054837173
-
Antagonists induce a conformational change in cIAP1 that promotes autoubiquitination
-
Dueber, E. C., Schoeffler, A. J., Lingel, A., Elliott, J. M., Fedorova, A. V., Giannetti, A. M., Zobel, K., Maurer, B., Varfolomeev, E., Wu, P., Wallweber, H. J., Hymowitz, S. G., Deshayes, K., Vucic, D., and Fairbrother, W. J. (2011) Antagonists induce a conformational change in cIAP1 that promotes autoubiquitination. Science 334, 376-380
-
(2011)
Science
, vol.334
, pp. 376-380
-
-
Dueber, E.C.1
Schoeffler, A.J.2
Lingel, A.3
Elliott, J.M.4
Fedorova, A.V.5
Giannetti, A.M.6
Zobel, K.7
Maurer, B.8
Varfolomeev, E.9
Wu, P.10
Wallweber, H.J.11
Hymowitz, S.G.12
Deshayes, K.13
Vucic, D.14
Fairbrother, W.J.15
-
16
-
-
79958051518
-
CARD-mediated autoinhibition of cIAP1's E3 ligase activity suppresses cell proliferation and migration
-
Lopez, J., John, S. W., Tenev, T., Rautureau, G. J., Hinds, M. G., Francalanci, F., Wilson, R., Broemer, M., Santoro, M. M., Day, C. L., and Meier, P. (2011) CARD-mediated autoinhibition of cIAP1's E3 ligase activity suppresses cell proliferation and migration. Mol. Cell 42, 569-583
-
(2011)
Mol. Cell
, vol.42
, pp. 569-583
-
-
Lopez, J.1
John, S.W.2
Tenev, T.3
Rautureau, G.J.4
Hinds, M.G.5
Francalanci, F.6
Wilson, R.7
Broemer, M.8
Santoro, M.M.9
Day, C.L.10
Meier, P.11
-
17
-
-
57649120782
-
Structures of the cIAP2 RING domain reveal conformational changes associated with ubiquitin-conjugating enzyme (E2) recruitment
-
Mace, P. D., Linke, K., Feltham, R., Schumacher, F. R., Smith, C. A., Vaux, D. L., Silke, J., and Day, C. L. (2008) Structures of the cIAP2 RING domain reveal conformational changes associated with ubiquitin-conjugating enzyme (E2) recruitment. J. Biol. Chem. 283, 31633-31640
-
(2008)
J. Biol. Chem
, vol.283
, pp. 31633-31640
-
-
Mace, P.D.1
Linke, K.2
Feltham, R.3
Schumacher, F.R.4
Smith, C.A.5
Vaux, D.L.6
Silke, J.7
Day, C.L.8
-
18
-
-
79955759159
-
Smac mimetics activate the E3 ligase activity of cIAP1 protein by promoting RING domain dimerization
-
Feltham, R., Bettjeman, B., Budhidarmo, R., Mace, P. D., Shirley, S., Condon, S. M., Chunduru, S. K., McKinlay, M. A., Vaux, D. L., Silke, J., and Day, C. L. (2011) Smac mimetics activate the E3 ligase activity of cIAP1 protein by promoting RING domain dimerization. J. Biol. Chem. 286, 17015-17028
-
(2011)
J. Biol. Chem
, vol.286
, pp. 17015-17028
-
-
Feltham, R.1
Bettjeman, B.2
Budhidarmo, R.3
Mace, P.D.4
Shirley, S.5
Condon, S.M.6
Chunduru, S.K.7
McKinlay, M.A.8
Vaux, D.L.9
Silke, J.10
Day, C.L.11
-
19
-
-
58249086500
-
Ubiquitin binding modulates IAP antagonist-stimulated proteasomal degradation of c-IAP1 and c-IAP2
-
Blankenship, J. W., Varfolomeev, E., Goncharov, T., Fedorova, A. V., Kirkpatrick, D. S., Izrael-Tomasevic, A., Phu, L., Arnott, D., Aghajan, M., Zobel, K., Bazan, J. F., Fairbrother, W. J., Deshayes, K., and Vucic, D. (2009) Ubiquitin binding modulates IAP antagonist-stimulated proteasomal degradation of c-IAP1 and c-IAP2. Biochem. J. 417, 149-160
-
(2009)
Biochem. J
, vol.417
, pp. 149-160
-
-
Blankenship, J.W.1
Varfolomeev, E.2
Goncharov, T.3
Fedorova, A.V.4
Kirkpatrick, D.S.5
Izrael-Tomasevic, A.6
Phu, L.7
Arnott, D.8
Aghajan, M.9
Zobel, K.10
Bazan, J.F.11
Fairbrother, W.J.12
Deshayes, K.13
Vucic, D.14
-
20
-
-
55549140475
-
IAPs contain an evolutionarily conserved ubiquitin-binding domain that regulates NF-κB as well as cell survival and oncogenesis
-
Gyrd-Hansen, M., Darding, M., Miasari, M., Santoro, M. M., Zender, L., Xue, W., Tenev, T., da Fonseca, P. C., Zvelebil, M., Bujnicki, J. M., Lowe, S., Silke, J., and Meier, P. (2008) IAPs contain an evolutionarily conserved ubiquitin-binding domain that regulates NF-κB as well as cell survival and oncogenesis. Nat. Cell Biol. 10, 1309-1317
-
(2008)
Nat. Cell Biol
, vol.10
, pp. 1309-1317
-
-
Gyrd-Hansen, M.1
Darding, M.2
Miasari, M.3
Santoro, M.M.4
Zender, L.5
Xue, W.6
Tenev, T.7
Da Fonseca, P.C.8
Zvelebil, M.9
Bujnicki, J.M.10
Lowe, S.11
Silke, J.12
Meier, P.13
-
21
-
-
67349231313
-
Molecular discrimination of structurally equivalent Lys63-linked and linear polyubiquitin chains
-
Komander, D., Reyes-Turcu, F., Licchesi, J. D., Odenwaelder, P., Wilkinson, K. D., and Barford, D. (2009) Molecular discrimination of structurally equivalent Lys63-linked and linear polyubiquitin chains. EMBO Rep. 10, 466-473
-
(2009)
EMBO Rep
, vol.10
, pp. 466-473
-
-
Komander, D.1
Reyes-Turcu, F.2
Licchesi, J.D.3
Odenwaelder, P.4
Wilkinson, K.D.5
Barford, D.6
-
22
-
-
85047669941
-
The UBA domain: A sequence motif present in multiple enzyme classes of the ubiquitination pathway
-
Hofmann, K., and Bucher, P. (1996) The UBA domain: a sequence motif present in multiple enzyme classes of the ubiquitination pathway. Trends Biochem. Sci. 21, 172-173
-
(1996)
Trends Biochem. Sci
, vol.21
, pp. 172-173
-
-
Hofmann, K.1
Bucher, P.2
-
23
-
-
83455262533
-
Structural analysis of the UBA domain of X-linked inhibitor of apoptosis protein reveals different surfaces for ubiquitinbinding and self-association
-
Tse, M. K., Hui, S. K., Yang, Y., Yin, S. T., Hu, H. Y., Zou, B., Wong, B. C., and Sze, K. H. (2011) Structural analysis of the UBA domain of X-linked inhibitor of apoptosis protein reveals different surfaces for ubiquitinbinding and self-association. PLoS One 6, e28511
-
(2011)
PLoS One
, vol.6
-
-
Tse, M.K.1
Hui, S.K.2
Yang, Y.3
Yin, S.T.4
Hu, H.Y.5
Zou, B.6
Wong, B.C.7
Sze, K.H.8
-
24
-
-
36148954336
-
IAP antagonists target cIAP1 to induce TNFα-dependent apoptosis
-
Vince, J. E., Wong, W. W., Khan, N., Feltham, R., Chau, D., Ahmed, A. U., Benetatos, C. A., Chunduru, S. K., Condon, S. M., McKinlay, M., Brink, R., Leverkus, M., Tergaonkar, V., Schneider, P., Callus, B. A., Koentgen, F., Vaux, D. L., and Silke, J. (2007) IAP antagonists target cIAP1 to induce TNFα-dependent apoptosis. Cell 131, 682-693
-
(2007)
Cell
, vol.131
, pp. 682-693
-
-
Vince, J.E.1
Wong, W.W.2
Khan, N.3
Feltham, R.4
Chau, D.5
Ahmed, A.U.6
Benetatos, C.A.7
Chunduru, S.K.8
Condon, S.M.9
McKinlay, M.10
Brink, R.11
Leverkus, M.12
Tergaonkar, V.13
Schneider, P.14
Callus, B.A.15
Koentgen, F.16
Vaux, D.L.17
Silke, J.18
-
25
-
-
52149103164
-
Structural basis for specific cleavage of Lys63-linked polyubiquitin chains
-
Sato, Y., Yoshikawa, A., Yamagata, A., Mimura, H., Yamashita, M., Ookata, K., Nureki, O., Iwai, K., Komada, M., and Fukai, S. (2008) Structural basis for specific cleavage of Lys63-linked polyubiquitin chains. Nature 455, 358-362
-
(2008)
Nature
, vol.455
, pp. 358-362
-
-
Sato, Y.1
Yoshikawa, A.2
Yamagata, A.3
Mimura, H.4
Yamashita, M.5
Ookata, K.6
Nureki, O.7
Iwai, K.8
Komada, M.9
Fukai, S.10
-
26
-
-
47549111312
-
Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes
-
Lee, I., and Schindelin, H. (2008) Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes. Cell 134, 268-278
-
(2008)
Cell
, vol.134
, pp. 268-278
-
-
Lee, I.1
Schindelin, H.2
-
27
-
-
17044420416
-
Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition
-
Ohno, A., Jee, J., Fujiwara, K., Tenno, T., Goda, N., Tochio, H., Kobayashi, H., Hiroaki, H., and Shirakawa, M. (2005) Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition. Structure 13, 521-532
-
(2005)
Structure
, vol.13
, pp. 521-532
-
-
Ohno, A.1
Jee, J.2
Fujiwara, K.3
Tenno, T.4
Goda, N.5
Tochio, H.6
Kobayashi, H.7
Hiroaki, H.8
Shirakawa, M.9
-
28
-
-
33646041593
-
Structural basis for monoubiquitin recognition by the Ede1 UBA domain
-
Swanson, K. A., Hicke, L., and Radhakrishnan, I. (2006) Structural basis for monoubiquitin recognition by the Ede1 UBA domain. J. Mol. Biol. 358, 713-724
-
(2006)
J. Mol. Biol
, vol.358
, pp. 713-724
-
-
Swanson, K.A.1
Hicke, L.2
Radhakrishnan, I.3
-
29
-
-
84901036068
-
Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin
-
Walinda, E., Morimoto, D., Sugase, K., Konuma, T., Tochio, H., and Shirakawa, M. (2014) Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin. J. Biol. Chem. 289, 13890-13902
-
(2014)
J. Biol. Chem
, vol.289
, pp. 13890-13902
-
-
Walinda, E.1
Morimoto, D.2
Sugase, K.3
Konuma, T.4
Tochio, H.5
Shirakawa, M.6
-
30
-
-
82455172117
-
Serine 403 phosphorylation of p62/SQSTM1 regulates selective autophagic clearance of ubiquitinated proteins
-
Matsumoto, G., Wada, K., Okuno, M., Kurosawa, M., and Nukina, N. (2011) Serine 403 phosphorylation of p62/SQSTM1 regulates selective autophagic clearance of ubiquitinated proteins. Mol. Cell 44, 279-289
-
(2011)
Mol. Cell
, vol.44
, pp. 279-289
-
-
Matsumoto, G.1
Wada, K.2
Okuno, M.3
Kurosawa, M.4
Nukina, N.5
-
31
-
-
36048999753
-
IAP antagonists induce autoubiquitination of c-IAPs, NF-κB activation, and TNFα-dependent apoptosis
-
Varfolomeev, E., Blankenship, J. W., Wayson, S. M., Fedorova, A. V., Kayagaki, N., Garg, P., Zobel, K., Dynek, J. N., Elliott, L. O., Wallweber, H. J., Flygare, J. A., Fairbrother, W. J., Deshayes, K., Dixit, V. M., and Vucic, D. (2007) IAP antagonists induce autoubiquitination of c-IAPs, NF-κB activation, and TNFα-dependent apoptosis. Cell 131, 669-681
-
(2007)
Cell
, vol.131
, pp. 669-681
-
-
Varfolomeev, E.1
Blankenship, J.W.2
Wayson, S.M.3
Fedorova, A.V.4
Kayagaki, N.5
Garg, P.6
Zobel, K.7
Dynek, J.N.8
Elliott, L.O.9
Wallweber, H.J.10
Flygare, J.A.11
Fairbrother, W.J.12
Deshayes, K.13
Dixit, V.M.14
Vucic, D.15
-
32
-
-
0037187597
-
A single motif responsible for ubiquitin recognition and monoubiquitination in endocytic proteins
-
Polo, S., Sigismund, S., Faretta, M., Guidi, M., Capua, M. R., Bossi, G., Chen, H., De Camilli, P., and Di Fiore, P. P. (2002) A single motif responsible for ubiquitin recognition and monoubiquitination in endocytic proteins. Nature 416, 451-455
-
(2002)
Nature
, vol.416
, pp. 451-455
-
-
Polo, S.1
Sigismund, S.2
Faretta, M.3
Guidi, M.4
Capua, M.R.5
Bossi, G.6
Chen, H.7
De Camilli, P.8
Di Fiore, P.P.9
-
33
-
-
33750532531
-
Molecular mechanisms of coupled monoubiquitination
-
Woelk, T., Oldrini, B., Maspero, E., Confalonieri, S., Cavallaro, E., Di Fiore, P. P., and Polo, S. (2006) Molecular mechanisms of coupled monoubiquitination. Nat. Cell Biol. 8, 1246-1254
-
(2006)
Nat. Cell Biol
, vol.8
, pp. 1246-1254
-
-
Woelk, T.1
Oldrini, B.2
Maspero, E.3
Confalonieri, S.4
Cavallaro, E.5
Di Fiore, P.P.6
Polo, S.7
-
34
-
-
33646122226
-
Molecular determinants of polyubiquitin linkage selection by an HECT ubiquitin ligase
-
Wang, M., Cheng, D., Peng, J., and Pickart, C. M. (2006) Molecular determinants of polyubiquitin linkage selection by an HECT ubiquitin ligase. EMBO J. 25, 1710-1719
-
(2006)
EMBO J
, vol.25
, pp. 1710-1719
-
-
Wang, M.1
Cheng, D.2
Peng, J.3
Pickart, C.M.4
-
35
-
-
84866124869
-
BIRC7-E2 ubiquitin conjugate structure reveals the mechanism of ubiquitin transfer by a RING dimer
-
Dou, H., Buetow, L., Sibbet, G. J., Cameron, K., and Huang, D. T. (2012) BIRC7-E2 ubiquitin conjugate structure reveals the mechanism of ubiquitin transfer by a RING dimer. Nat. Struct. Mol. Biol. 19, 876-883
-
(2012)
Nat. Struct. Mol. Biol
, vol.19
, pp. 876-883
-
-
Dou, H.1
Buetow, L.2
Sibbet, G.J.3
Cameron, K.4
Huang, D.T.5
-
36
-
-
84874590707
-
Regulation of ubiquitin transfer by XIAP, a dimeric RING E3 ligase
-
Nakatani, Y., Kleffmann, T., Linke, K., Condon, S. M., Hinds, M. G., and Day, C. L. (2013) Regulation of ubiquitin transfer by XIAP, a dimeric RING E3 ligase. Biochem. J. 450, 629-638
-
(2013)
Biochem. J
, vol.450
, pp. 629-638
-
-
Nakatani, Y.1
Kleffmann, T.2
Linke, K.3
Condon, S.M.4
Hinds, M.G.5
Day, C.L.6
-
37
-
-
0034682718
-
Structure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases
-
Zheng, N., Wang, P., Jeffrey, P. D., and Pavletich, N. P. (2000) Structure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases. Cell 102, 533-539
-
(2000)
Cell
, vol.102
, pp. 533-539
-
-
Zheng, N.1
Wang, P.2
Jeffrey, P.D.3
Pavletich, N.P.4
-
38
-
-
79952407243
-
Ubiquitin in motion: Structural studies of the ubiquitin-conjugating enzyme~ubiquitin conjugate
-
Pruneda, J. N., Stoll, K. E., Bolton, L. J., Brzovic, P. S., and Klevit, R. E. (2011) Ubiquitin in motion: structural studies of the ubiquitin-conjugating enzyme~ubiquitin conjugate. Biochemistry 50, 1624-1633
-
(2011)
Biochemistry
, vol.50
, pp. 1624-1633
-
-
Pruneda, J.N.1
Stoll, K.E.2
Bolton, L.J.3
Brzovic, P.S.4
Klevit, R.E.5
-
39
-
-
77951295612
-
Mutant p62/ SQSTM1 UBA domains linked to Paget's disease of bone differ in their abilities to function as stabilization signals
-
Heinen, C., Garner, T. P., Long, J., Böttcher, C., Ralston, S. H., Cavey, J. R., Searle, M. S., Layfield, R., and Dantuma, N. P. (2010) Mutant p62/ SQSTM1 UBA domains linked to Paget's disease of bone differ in their abilities to function as stabilization signals. FEBS Lett. 584, 1585-1590
-
(2010)
FEBS Lett
, vol.584
, pp. 1585-1590
-
-
Heinen, C.1
Garner, T.P.2
Long, J.3
Böttcher, C.4
Ralston, S.H.5
Cavey, J.R.6
Searle, M.S.7
Layfield, R.8
Dantuma, N.P.9
-
40
-
-
84863230531
-
The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a SOUBA domain
-
Agromayor, M., Soler, N., Caballe, A., Kueck, T., Freund, S. M., Allen, M. D., Bycroft, M., Perisic, O., Ye, Y., McDonald, B., Scheel, H., Hofmann, K., Neil, S. J., Martin-Serrano, J., and Williams, R. L. (2012) The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a SOUBA domain. Structure 20, 414-428
-
(2012)
Structure
, vol.20
, pp. 414-428
-
-
Agromayor, M.1
Soler, N.2
Caballe, A.3
Kueck, T.4
Freund, S.M.5
Allen, M.D.6
Bycroft, M.7
Perisic, O.8
Ye, Y.9
McDonald, B.10
Scheel, H.11
Hofmann, K.12
Neil, S.J.13
Martin-Serrano, J.14
Williams, R.L.15
-
41
-
-
24644436457
-
Budding yeast Dsk2 protein forms a homodimer via its C-terminal UBA domain
-
Sasaki, T., Funakoshi, M., Endicott, J. A., and Kobayashi, H. (2005) Budding yeast Dsk2 protein forms a homodimer via its C-terminal UBA domain. Biochem. Biophys. Res. Commun. 336, 530-535
-
(2005)
Biochem. Biophys. Res. Commun
, vol.336
, pp. 530-535
-
-
Sasaki, T.1
Funakoshi, M.2
Endicott, J.A.3
Kobayashi, H.4
-
42
-
-
67249155736
-
Structure of full-length ubiquitin-conjugating enzyme E2-25K (huntingtin-interacting protein 2)
-
Wilson, R. C., Hughes, R. C., Flatt, J. W., Meehan, E. J., Ng, J. D., and Twigg, P. D. (2009) Structure of full-length ubiquitin-conjugating enzyme E2-25K (huntingtin-interacting protein 2). Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 65, 440-444
-
(2009)
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun
, vol.65
, pp. 440-444
-
-
Wilson, R.C.1
Hughes, R.C.2
Flatt, J.W.3
Meehan, E.J.4
Ng, J.D.5
Twigg, P.D.6
-
43
-
-
68249135262
-
Avid interactions underlie the Lys63-linked polyubiquitin binding specificities observed for UBA domains
-
Sims, J. J., Haririnia, A., Dickinson, B. C., Fushman, D., and Cohen, R. E. (2009) Avid interactions underlie the Lys63-linked polyubiquitin binding specificities observed for UBA domains. Nat. Struct. Mol. Biol. 16, 883-889
-
(2009)
Nat. Struct. Mol. Biol
, vol.16
, pp. 883-889
-
-
Sims, J.J.1
Haririnia, A.2
Dickinson, B.C.3
Fushman, D.4
Cohen, R.E.5
-
44
-
-
84896375470
-
SUMO chain-induced dimerization activates RNF4
-
Rojas-Fernandez, A., Plechanovová, A., Hattersley, N., Jaffray, E., Tatham, M. H., and Hay, R. T. (2014) SUMO chain-induced dimerization activates RNF4. Mol. Cell 53, 880-892
-
(2014)
Mol. Cell
, vol.53
, pp. 880-892
-
-
Rojas-Fernandez, A.1
Plechanovová, A.2
Hattersley, N.3
Jaffray, E.4
Tatham, M.H.5
Hay, R.T.6
-
45
-
-
84870562001
-
Promiscuous interactions of gp78 E3 ligase CUE domain with polyubiquitin chains
-
Liu, S., Chen, Y., Li, J., Huang, T., Tarasov, S., King, A., Weissman, A. M., Byrd, R. A., and Das, R. (2012) Promiscuous interactions of gp78 E3 ligase CUE domain with polyubiquitin chains. Structure 20, 2138-2150
-
(2012)
Structure
, vol.20
, pp. 2138-2150
-
-
Liu, S.1
Chen, Y.2
Li, J.3
Huang, T.4
Tarasov, S.5
King, A.6
Weissman, A.M.7
Byrd, R.A.8
Das, R.9
-
46
-
-
44949249968
-
Gp78 cooperates with RMA1 in endoplasmic reticulum-associated degradation of CFTRΔF508
-
Morito, D., Hirao, K., Oda, Y., Hosokawa, N., Tokunaga, F., Cyr, D. M., Tanaka, K., Iwai, K., and Nagata, K. (2008) Gp78 cooperates with RMA1 in endoplasmic reticulum-associated degradation of CFTRΔF508. Mol. Biol. Cell 19, 1328-1336
-
(2008)
Mol. Biol. Cell
, vol.19
, pp. 1328-1336
-
-
Morito, D.1
Hirao, K.2
Oda, Y.3
Hosokawa, N.4
Tokunaga, F.5
Cyr, D.M.6
Tanaka, K.7
Iwai, K.8
Nagata, K.9
-
47
-
-
33644850903
-
A UbcH5/ubiquitin noncovalent complex is required for processive BRCA1-directed ubiquitination
-
Brzovic, P. S., Lissounov, A., Christensen, D. E., Hoyt, D. W., and Klevit, R. E. (2006) A UbcH5/ubiquitin noncovalent complex is required for processive BRCA1-directed ubiquitination. Mol. Cell 21, 873-880
-
(2006)
Mol. Cell
, vol.21
, pp. 873-880
-
-
Brzovic, P.S.1
Lissounov, A.2
Christensen, D.E.3
Hoyt, D.W.4
Klevit, R.E.5
-
48
-
-
84886723938
-
The N-terminal extension of UBE2E ubiquitin-conjugating enzymes limits chain assembly
-
Schumacher, F. R., Wilson, G., and Day, C. L. (2013) The N-terminal extension of UBE2E ubiquitin-conjugating enzymes limits chain assembly. J. Mol. Biol. 425, 4099-4111
-
(2013)
J. Mol. Biol
, vol.425
, pp. 4099-4111
-
-
Schumacher, F.R.1
Wilson, G.2
Day, C.L.3
-
49
-
-
84879582826
-
Auto-ubiquitination of Mdm2 enhances its substrate ubiquitin ligase activity
-
Ranaweera, R. S., and Yang, X. (2013) Auto-ubiquitination of Mdm2 enhances its substrate ubiquitin ligase activity. J. Biol. Chem. 288, 18939-18946
-
(2013)
J. Biol. Chem
, vol.288
, pp. 18939-18946
-
-
Ranaweera, R.S.1
Yang, X.2
-
50
-
-
70450218366
-
Rapid E2-E3 assembly and disassembly enable processive ubiquitylation of cullin-RING ubiquitin ligase substrates
-
Kleiger, G., Saha, A., Lewis, S., Kuhlman, B., and Deshaies, R. J. (2009) Rapid E2-E3 assembly and disassembly enable processive ubiquitylation of cullin-RING ubiquitin ligase substrates. Cell 139, 957-968
-
(2009)
Cell
, vol.139
, pp. 957-968
-
-
Kleiger, G.1
Saha, A.2
Lewis, S.3
Kuhlman, B.4
Deshaies, R.J.5
-
51
-
-
67449110736
-
Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78
-
Das, R., Mariano, J., Tsai, Y. C., Kalathur, R. C., Kostova, Z., Li, J., Tarasov, S. G., McFeeters, R. L., Altieri, A. S., Ji, X., Byrd, R. A., and Weissman, A. M. (2009) Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78. Mol. Cell 34, 674-685
-
(2009)
Mol. Cell
, vol.34
, pp. 674-685
-
-
Das, R.1
Mariano, J.2
Tsai, Y.C.3
Kalathur, R.C.4
Kostova, Z.5
Li, J.6
Tarasov, S.G.7
McFeeters, R.L.8
Altieri, A.S.9
Ji, X.10
Byrd, R.A.11
Weissman, A.M.12
-
52
-
-
79955027304
-
E3 ligase Rad18 promotes monoubiquitination rather than ubiquitin chain formation by E2 enzyme Rad6
-
Hibbert, R. G., Huang, A., Boelens, R., and Sixma, T. K. (2011) E3 ligase Rad18 promotes monoubiquitination rather than ubiquitin chain formation by E2 enzyme Rad6. Proc. Natl. Acad. Sci. U.S.A. 108, 5590-5595
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 5590-5595
-
-
Hibbert, R.G.1
Huang, A.2
Boelens, R.3
Sixma, T.K.4
-
53
-
-
84857196028
-
Insights into ubiquitin-conjugating enzyme/co-activator interactions from the structure of the Pex4p:Pex22p complex
-
Williams, C., van den Berg, M., Panjikar, S., Stanley, W. A., Distel, B., and Wilmanns, M. (2012) Insights into ubiquitin-conjugating enzyme/co-activator interactions from the structure of the Pex4p:Pex22p complex. EMBO J. 31, 391-402
-
(2012)
EMBO J
, vol.31
, pp. 391-402
-
-
Williams, C.1
Van Den Berg, M.2
Panjikar, S.3
Stanley, W.A.4
Distel, B.5
Wilmanns, M.6
-
54
-
-
84878170491
-
A structurally unique E2-binding domain activates ubiquitination by the ERAD E2, Ubc7p, through multiple mechanisms
-
Metzger, M. B., Liang, Y. H., Das, R., Mariano, J., Li, S., Li, J., Kostova, Z., Byrd, R. A., Ji, X., and Weissman, A. M. (2013) A structurally unique E2-binding domain activates ubiquitination by the ERAD E2, Ubc7p, through multiple mechanisms. Mol. Cell 50, 516-527
-
(2013)
Mol. Cell
, vol.50
, pp. 516-527
-
-
Metzger, M.B.1
Liang, Y.H.2
Das, R.3
Mariano, J.4
Li, S.5
Li, J.6
Kostova, Z.7
Byrd, R.A.8
Ji, X.9
Weissman, A.M.10
-
55
-
-
84876237590
-
E6AP/UBE3A ubiquitin ligase harbors two E2~ubiquitin binding sites
-
Ronchi, V. P., Klein, J. M., and Haas, A. L. (2013) E6AP/UBE3A ubiquitin ligase harbors two E2~ubiquitin binding sites. J. Biol. Chem. 288, 10349-10360
-
(2013)
J. Biol. Chem
, vol.288
, pp. 10349-10360
-
-
Ronchi, V.P.1
Klein, J.M.2
Haas, A.L.3
-
56
-
-
34948848684
-
E2-BRCA1 RING interactions dictate synthesis of mono- or specific polyubiquitin chain linkages
-
Christensen, D. E., Brzovic, P. S., and Klevit, R. E. (2007) E2-BRCA1 RING interactions dictate synthesis of mono- or specific polyubiquitin chain linkages. Nat. Struct. Mol. Biol. 14, 941-948
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 941-948
-
-
Christensen, D.E.1
Brzovic, P.S.2
Klevit, R.E.3
-
57
-
-
28944435024
-
Mechanism of lysine 48-linked ubiquitin-chain synthesis by the cullin-RING ubiquitin-ligase complex SCF-Cdc34
-
Petroski, M. D., and Deshaies, R. J. (2005) Mechanism of lysine 48-linked ubiquitin-chain synthesis by the cullin-RING ubiquitin-ligase complex SCF-Cdc34. Cell 123, 1107-1120
-
(2005)
Cell
, vol.123
, pp. 1107-1120
-
-
Petroski, M.D.1
Deshaies, R.J.2
-
58
-
-
79959347898
-
Regulation of ubiquitin chain initiation to control the timing of substrate degradation
-
Williamson, A., Banerjee, S., Zhu, X., Philipp, I., Iavarone, A. T., and Rape, M. (2011) Regulation of ubiquitin chain initiation to control the timing of substrate degradation. Mol. Cell 42, 744-757
-
(2011)
Mol. Cell
, vol.42
, pp. 744-757
-
-
Williamson, A.1
Banerjee, S.2
Zhu, X.3
Philipp, I.4
Iavarone, A.T.5
Rape, M.6
-
59
-
-
77949548466
-
Priming and extending: A UbcH5/Cdc34 E2 handoff mechanism for polyubiquitination on a SCF substrate
-
Wu, K., Kovacev, J., and Pan, Z. Q. (2010) Priming and extending: a UbcH5/Cdc34 E2 handoff mechanism for polyubiquitination on a SCF substrate. Mol. Cell 37, 784-796
-
(2010)
Mol. Cell
, vol.37
, pp. 784-796
-
-
Wu, K.1
Kovacev, J.2
Pan, Z.Q.3
|