메뉴 건너뛰기




Volumn 88, Issue 19, 2014, Pages 11022-11033

Seed sequence-matched controls reveal limitations of small interfering RNA knockdown in functional and structural studies of hepatitis C virus NS5A-MOBKL1B interaction

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOPHILIN A; MOBKL1B PROTEIN; NONSTRUCTURAL PROTEIN 5A; SMALL INTERFERING RNA; UNCLASSIFIED DRUG; VIRUS PROTEIN; MOB1A PROTEIN, HUMAN; NS 5 PROTEIN, HEPATITIS C VIRUS; NS-5 PROTEIN, HEPATITIS C VIRUS; SIGNAL TRANSDUCING ADAPTOR PROTEIN;

EID: 84906971908     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.01582-14     Document Type: Article
Times cited : (19)

References (48)
  • 1
    • 0034651580 scopus 로고    scopus 로고
    • Pathogenesis, natural history, treatment, and prevention of hepatitis C
    • Liang TJ, Rehermann B, Seeff LB, Hoofnagle JH. 2000. Pathogenesis, natural history, treatment, and prevention of hepatitis C. Ann. Intern. Med. 132:296- 305. http://dx.doi.org/10.7326/0003-4819-132-4-200002150-00008.
    • (2000) Ann. Intern. Med. , vol.132 , pp. 296- 305
    • Liang, T.J.1    Rehermann, B.2    Seeff, L.B.3    Hoofnagle, J.H.4
  • 2
    • 84890869379 scopus 로고    scopus 로고
    • HCV direct-actingantiviral agents: the best interferon-free combination
    • Schinazi R, Halfon P, Marcellin P, Asselah T. 2014. HCV direct-actingantiviral agents: the best interferon-free combination. Liver Int. 34:69-78. http://dx.doi.org/10.1111/liv.12423.
    • (2014) Liver Int. , vol.34 , pp. 69-78
    • Schinazi, R.1    Halfon, P.2    Marcellin, P.3    Asselah, T.4
  • 3
    • 0036345943 scopus 로고    scopus 로고
    • Interaction between hepatitis C virus proteins and host cell factors
    • Tellinghuisen TL, Rice CM. 2002. Interaction between hepatitis C virus proteins and host cell factors. Curr. Opin. Microbiol. 5:419-427. http: //dx.doi.org/10.1016/S1369-5274(02)00341-7.
    • (2002) Curr. Opin. Microbiol. , vol.5 , pp. 419-427
    • Tellinghuisen, T.L.1    Rice, C.M.2
  • 4
    • 84880299420 scopus 로고    scopus 로고
    • NS5A inhibitors in the treatment of hepatitis C
    • Pawlotsky JM. 2013. NS5A inhibitors in the treatment of hepatitis C. J. Hepatol. 59:375-382. http://dx.doi.org/10.1016/j.jhep.2013.03.030.
    • (2013) J. Hepatol. , vol.59 , pp. 375-382
    • Pawlotsky, J.M.1
  • 7
    • 38349162328 scopus 로고    scopus 로고
    • Identification of residues required for RNA replication in domain 2 and 3 of the hepatitis C virus NS5A protein
    • Tellinghuisen TL, Foss KL, Treadaway JC, Rice CM. 2008. Identification of residues required for RNA replication in domain 2 and 3 of the hepatitis C virus NS5A protein. J. Virol. 82:1073-1083. http://dx.doi.org/10.1128/JVI.00328-07.
    • (2008) J. Virol. , vol.82 , pp. 1073-1083
    • Tellinghuisen, T.L.1    Foss, K.L.2    Treadaway, J.C.3    Rice, C.M.4
  • 8
    • 79960997489 scopus 로고    scopus 로고
    • The Hippo pathway in organ size control, tissue regeneration and stem cell self-renewal
    • Zhao B, Tumaneng K, Guan KL. 2011. The Hippo pathway in organ size control, tissue regeneration and stem cell self-renewal. Nat. Cell Biol. 13: 877-883. http://dx.doi.org/10.1038/ncb2303.
    • (2011) Nat. Cell Biol. , vol.13 , pp. 877-883
    • Zhao, B.1    Tumaneng, K.2    Guan, K.L.3
  • 9
    • 39849097306 scopus 로고    scopus 로고
    • The emerging role of the hippo pathway in cell contact inhibition, organ size control, and cancer development in mammals
    • Zeng Q, Hong W. 2008. The emerging role of the hippo pathway in cell contact inhibition, organ size control, and cancer development in mammals. Cancer Cell 13:188-192. http://dx.doi.org/10.1016/j.ccr.2008.02.011.
    • (2008) Cancer Cell , vol.13 , pp. 188-192
    • Zeng, Q.1    Hong, W.2
  • 10
    • 33847206401 scopus 로고    scopus 로고
    • The Salvador-Warts-Hippo pathway-an emerging tumour-suppressor network
    • Harvey K, Tapon N. 2007. The Salvador-Warts-Hippo pathway-an emerging tumour-suppressor network. Nat. Rev. Cancer 7:182-191. http://dx.doi.org/10.1038/nrc2070.
    • (2007) Nat. Rev. Cancer , vol.7 , pp. 182-191
    • Harvey, K.1    Tapon, N.2
  • 11
    • 70049096419 scopus 로고    scopus 로고
    • Essential role of cyclophilin A for hepatitis C virus replication and virus production and possible link to polyprotein cleavage kinetics
    • Kaul A, Stauffer S, Berger C, Pertel T, Schmitt J, Kallis S, Zayas M, Lohmann V, Luban J, Bartenschlager R. 2009 Essential role of cyclophilin A for hepatitis C virus replication and virus production and possible link to polyprotein cleavage kinetics. PLoS Pathog. 5:e1000546. http://dx.doi.org/10.1371/journal.ppat.1000546.
    • (2009) PLoS Pathog , vol.5 , pp. e1000546
    • Kaul, A.1    Stauffer, S.2    Berger, C.3    Pertel, T.4    Schmitt, J.5    Kallis, S.6    Zayas, M.7    Lohmann, V.8    Luban, J.9    Bartenschlager, R.10
  • 12
    • 67649412015 scopus 로고    scopus 로고
    • Hepatitis C virus NS5A protein is a substrate for the peptidyl-prolyl cis/trans isomerase activity of cyclophilins A and B
    • Hanoulle X, Badillo A, Wieruszeski JM, Verdegem D, Landrieu I, Bartenschlager R, Penin F, Lippens G. 2009. Hepatitis C virus NS5A protein is a substrate for the peptidyl-prolyl cis/trans isomerase activity of cyclophilins A and B. J. Biol. Chem. 284:13589-13601. http://dx.doi.org/10.1074/jbc.M809244200.
    • (2009) J. Biol. Chem. , vol.284 , pp. 13589-13601
    • Hanoulle, X.1    Badillo, A.2    Wieruszeski, J.M.3    Verdegem, D.4    Landrieu, I.5    Bartenschlager, R.6    Penin, F.7    Lippens, G.8
  • 14
    • 79960422127 scopus 로고    scopus 로고
    • Cyclophilin A interacts with domain 2 of hepatitis C virus NS5A and stimulates RNA binding in an isomerase-dependent manner
    • Foster TL, Gallay P, Stonehouse NJ, Harris M. 2011. Cyclophilin A interacts with domain 2 of hepatitis C virus NS5A and stimulates RNA binding in an isomerase-dependent manner. J. Virol. 85:7460-7464. http://dx.doi.org/10.1128/JVI.00393-11.
    • (2011) J. Virol. , vol.85 , pp. 7460-7464
    • Foster, T.L.1    Gallay, P.2    Stonehouse, N.J.3    Harris, M.4
  • 15
    • 84885772855 scopus 로고    scopus 로고
    • Host-targeting agents in the treatment of hepatitis C: a beginning and an end?
    • Baugh JM, Garcia-Rivera JA, Gallay PA. 2013. Host-targeting agents in the treatment of hepatitis C: a beginning and an end? Antiviral Res. 100: 555-561.http://dx.doi.org/10.1016/j.antiviral.2013.09.020.
    • (2013) Antiviral Res. , vol.100 , pp. 555-561
    • Baugh, J.M.1    Garcia-Rivera, J.A.2    Gallay, P.A.3
  • 18
    • 34247631514 scopus 로고    scopus 로고
    • Analysis of hepatitis C virus superinfection exclusion by using novel fluorochrome gene-tagged viral genomes
    • Schaller T, Appel N, Koutsoudakis G, Kallis S, Lohmann V, Pietschmann T, Bartenschlager R. 2007. Analysis of hepatitis C virus superinfection exclusion by using novel fluorochrome gene-tagged viral genomes. J. Virol. 81:4591-4603. http://dx.doi.org/10.1128/JVI.02144-06.
    • (2007) J. Virol. , vol.81 , pp. 4591-4603
    • Schaller, T.1    Appel, N.2    Koutsoudakis, G.3    Kallis, S.4    Lohmann, V.5    Pietschmann, T.6    Bartenschlager, R.7
  • 20
    • 79952296871 scopus 로고    scopus 로고
    • RecombinantHCVvariants with NS5A from genotypes 1-7 have different sensitivities to an NS5A inhibitor but not interferon-α
    • Scheel TKH, Gottwein JM, Mikkelsen LS, Jensen TB, Bukh J. 2011. RecombinantHCVvariants with NS5A from genotypes 1-7 have different sensitivities to an NS5A inhibitor but not interferon-α. Gastroenterology 140:1032-1043. http://dx.doi.org/10.1053/j.gastro.2010.11.036.
    • (2011) Gastroenterology , vol.140 , pp. 1032-1043
    • Scheel, T.K.H.1    Gottwein, J.M.2    Mikkelsen, L.S.3    Jensen, T.B.4    Bukh, J.5
  • 22
    • 0033638223 scopus 로고    scopus 로고
    • Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast
    • Mossessova E, Lima CD. 2000. Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast. Mol. Cell 5:865-876. http://dx.doi.org/10.1016 /S1097-2765(00)80326-3.
    • (2000) Mol. Cell , vol.5 , pp. 865-876
    • Mossessova, E.1    Lima, C.D.2
  • 23
    • 0025944815 scopus 로고
    • Immobilization of proteins to a carboxymethyldextran-modified gold surface for biospecific interaction analysis in surface plasmon resonance sensors
    • Johnsson B, Lofas S, Lindquist G. 1991. Immobilization of proteins to a carboxymethyldextran-modified gold surface for biospecific interaction analysis in surface plasmon resonance sensors. Anal. Biochem. 198:268-277. http://dx.doi.org/10.1016/0003-2697(91)90424-R.
    • (1991) Anal. Biochem. , vol.198 , pp. 268-277
    • Johnsson, B.1    Lofas, S.2    Lindquist, G.3
  • 24
    • 0032701484 scopus 로고    scopus 로고
    • Improving biosensor analysis
    • 10556875 Year does not match (PubMed did not provide)
    • Myszka DG. 1999. Improving biosensor analysis. J. Mol. Recognit. 12: 279-284. 10556875 Year does not match (PubMed did not provide). http://dx.doi.org/10.1002/(SICI)1099-1352(199909/10)12:5279::AID-JMR4733.0.CO;2-3.
    • (1999) J. Mol. Recognit. , vol.12 , pp. 279-284
    • Myszka, D.G.1
  • 25
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski Z, Minor W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Method Enzymol. 276:307-326. http://dx.doi.org/10.1016/S0076-6879(97)76066-X.
    • (1997) Method Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 30
    • 61849160363 scopus 로고    scopus 로고
    • A functional genomic screen identifies cellular cofactors of hepatitis C virus replication
    • Tai AW, Benita Y, Peng LF, Kim SS, Sakamoto N, Xavier RJ, Chung RT. 2009. A functional genomic screen identifies cellular cofactors of hepatitis C virus replication. Cell Host Microbe 5:298-307. http://dx.doi.org/10 .1016/j.chom.2009.02.001.
    • (2009) Cell Host Microbe , vol.5 , pp. 298-307
    • Tai, A.W.1    Benita, Y.2    Peng, L.F.3    Kim, S.S.4    Sakamoto, N.5    Xavier, R.J.6    Chung, R.T.7
  • 33
    • 84871265164 scopus 로고    scopus 로고
    • C911: A bench-level control for sequence specific siRNA off-target effects
    • Buehler E, Chen Y, Martin S. 2012. C911: A bench-level control for sequence specific siRNA off-target effects. PLoS One 7:e51942. http://dx.doi.org/10.1371/journal.pone.0051942.
    • (2012) PLoS One , vol.7 , pp. e51942
    • Buehler, E.1    Chen, Y.2    Martin, S.3
  • 37
    • 77953626646 scopus 로고    scopus 로고
    • Genomic screening with RNAi: results and challenges
    • Mohr S, Bakal C, Perrimon N. 2010. Genomic screening with RNAi: results and challenges. Annu. Rev. Biochem. 79:37-64. http://dx.doi.org/10.1146/annurev-biochem-060408-092949.
    • (2010) Annu. Rev. Biochem. , vol.79 , pp. 37-64
    • Mohr, S.1    Bakal, C.2    Perrimon, N.3
  • 38
    • 14544291462 scopus 로고    scopus 로고
    • Exploiting the RNA interference pathway to counter hepatitis B virus replication
    • Arbuthnot P, Carmona S, Ely A. 2005. Exploiting the RNA interference pathway to counter hepatitis B virus replication. Liver Int. 25:9-15. http://dx.doi.org/10.1111/j.1478-3231.2004.0966.x.
    • (2005) Liver Int. , vol.25 , pp. 9-15
    • Arbuthnot, P.1    Carmona, S.2    Ely, A.3
  • 39
    • 10344221613 scopus 로고    scopus 로고
    • TheNS5A protein of hepatitis C virus is a zinc metalloprotein
    • Tellinghuisen TL, Marcotrigiano J, Gorbalenya AE, Rice CM. 2004. TheNS5A protein of hepatitis C virus is a zinc metalloprotein. J. Biol. Chem. 279:48576-48587. http://dx.doi.org/10.1074/jbc.M407787200.
    • (2004) J. Biol. Chem. , vol.279 , pp. 48576-48587
    • Tellinghuisen, T.L.1    Marcotrigiano, J.2    Gorbalenya, A.E.3    Rice, C.M.4
  • 40
    • 0037040923 scopus 로고    scopus 로고
    • An amino-terminal amphipathic alpha-helix mediates membrane association of the hepatitis C virus nonstructural protein 5A
    • Brass V, Bieck E, Montserret R, Wo¨lk B, Hellings JA, Blum HE, Penin F, Moradpour D. 2002. An amino-terminal amphipathic alpha-helix mediates membrane association of the hepatitis C virus nonstructural protein 5A. J. Biol. Chem. 277:8130-8139. http://dx.doi.org/10.1074/jbc.M111289200.
    • (2002) J. Biol. Chem. , vol.277 , pp. 8130-8139
    • Brass, V.1    Bieck, E.2    Montserret, R.3    Wo¨lk, B.4    Hellings, J.A.5    Blum, H.E.6    Penin, F.7    Moradpour, D.8
  • 41
    • 35348891616 scopus 로고    scopus 로고
    • Domain 2 of nonstructural protein 5A (NS5A) of hepatitis C virus is natively unfolded
    • Liang Y, Ye H, Kang CB, Yoon HS. 2007. Domain 2 of nonstructural protein 5A (NS5A) of hepatitis C virus is natively unfolded. Biochemistry 46:11550-11558. http://dx.doi.org/10.1021/bi700776e.
    • (2007) Biochemistry , vol.46 , pp. 11550-11558
    • Liang, Y.1    Ye, H.2    Kang, C.B.3    Yoon, H.S.4
  • 42
    • 0033545996 scopus 로고    scopus 로고
    • NS5A, a nonstructural protein of hepatitis C virus, binds growth factor receptor-bound protein 2 adaptor protein in a Src homology 3 domain/ligand-dependent manner and perturbs mitogenic signaling
    • Tan SL, Nakao H, Vijaysri S, Neddermann P, Jacobs BL, Mayer BJ, Katze MG. 1999. NS5A, a nonstructural protein of hepatitis C virus, binds growth factor receptor-bound protein 2 adaptor protein in a Src homology 3 domain/ligand-dependent manner and perturbs mitogenic signaling. Proc. Natl. Acad. Sci. U. S. A. 96:5533-5538. http://dx.doi.org/10.1073/pnas.96.10.5533.
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 5533-5538
    • Tan, S.L.1    Nakao, H.2    Vijaysri, S.3    Neddermann, P.4    Jacobs, B.L.5    Mayer, B.J.6    Katze, M.G.7
  • 44
    • 0037192863 scopus 로고    scopus 로고
    • Hepatitis C virus (HCV) NS5A binds RNA-dependent RNA polymerase (RdRP) NS5B and modulates RNA-dependent RNA polymerase activity
    • Shirota Y, Luo H, Qin W, Kaneko S, Yamashita T, Kobayashi K, Murakami S. 2002. Hepatitis C virus (HCV) NS5A binds RNA-dependent RNA polymerase (RdRP) NS5B and modulates RNA-dependent RNA polymerase activity. J. Biol. Chem. 277:11149-11155. http://dx.doi.org/10.1074/jbc.M111392200.
    • (2002) J. Biol. Chem. , vol.277 , pp. 11149-11155
    • Shirota, Y.1    Luo, H.2    Qin, W.3    Kaneko, S.4    Yamashita, T.5    Kobayashi, K.6    Murakami, S.7
  • 47
    • 70350502865 scopus 로고    scopus 로고
    • MstI and Mst2 maintain hepatocyte quiescence and suppress hepatocellular carcinoma development through inactivation of the Yap1 oncogene
    • Zhou D, Conrad C, Xia F, Park JS, Payer B, Yin Y, Lauwers GY, Thasier W, Lee JT, Avruch J, Bardeesy N. 2009. MstI and Mst2 maintain hepatocyte quiescence and suppress hepatocellular carcinoma development through inactivation of the Yap1 oncogene. Cancer Cell 16:425-438. http: //dx.doi.org/10.1016/j.ccr.2009.09.026.
    • (2009) Cancer Cell , vol.16 , pp. 425-438
    • Zhou, D.1    Conrad, C.2    Xia, F.3    Park, J.S.4    Payer, B.5    Yin, Y.6    Lauwers, G.Y.7    Thasier, W.8    Lee, J.T.9    Avruch, J.10    Bardeesy, N.11
  • 48
    • 47549115586 scopus 로고    scopus 로고
    • Threonine 74 of MOB1 is a putative key phosphorylation site by MST2 to form the scaffold to activate nuclear Dbf2-related kinase 1
    • Hirabayashi S, Nakagawa K, Sumita K, Hidaka S, Kawai T, Ikeda M, Kawata A, Ohno K, Hata Y. 2008. Threonine 74 of MOB1 is a putative key phosphorylation site by MST2 to form the scaffold to activate nuclear Dbf2-related kinase 1. Oncogene 21:4281-4292. http://dx.doi.org/10.1038/onc.2008.66.
    • (2008) Oncogene , vol.21 , pp. 4281-4292
    • Hirabayashi, S.1    Nakagawa, K.2    Sumita, K.3    Hidaka, S.4    Kawai, T.5    Ikeda, M.6    Kawata, A.7    Ohno, K.8    Hata, Y.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.