-
1
-
-
17444424295
-
Serial SimCoal: A population genetics model for data from multiple populations and points in time
-
Anderson CNK, Ramakrishnan U, Chan YL, Hadly EA. 2005. Serial SimCoal: a population genetics model for data from multiple populations and points in time. Bioinformatics 21:1733-1734.
-
(2005)
Bioinformatics
, vol.21
, pp. 1733-1734
-
-
Anderson, C.N.K.1
Ramakrishnan, U.2
Chan, Y.L.3
Hadly, E.A.4
-
2
-
-
0034532485
-
Monte Carlo evaluation of the likelihood for N(e) from temporally spaced samples
-
Anderson EC, Williamson EG, Thompson EA. 2000. Monte Carlo evaluation of the likelihood for N(e) from temporally spaced samples. Genetics 156:2109-2118.
-
(2000)
Genetics
, vol.156
, pp. 2109-2118
-
-
Anderson, E.C.1
Williamson, E.G.2
Thompson, E.A.3
-
3
-
-
0043210659
-
Estimation of population growth or decline in genetically monitored populations
-
Beaumont MA. 2003. Estimation of population growth or decline in genetically monitored populations. Genetics 164:1139-1160.
-
(2003)
Genetics
, vol.164
, pp. 1139-1160
-
-
Beaumont, M.A.1
-
4
-
-
0036964474
-
Approximate Bayesian computation in population genetics
-
Beaumont MA, Zhang WY, Balding DJ. 2002. Approximate Bayesian computation in population genetics. Genetics 162:2025-2035.
-
(2002)
Genetics
, vol.162
, pp. 2025-2035
-
-
Beaumont, M.A.1
Zhang, W.Y.2
Balding, D.J.3
-
5
-
-
0036191720
-
Likelihoodbased estimation of the effective population size using temporal changes in allele frequencies: A genealogical approach
-
Berthier P, Beaumont MA, Cornuet J-M, Luikart G. 2002. Likelihoodbased estimation of the effective population size using temporal changes in allele frequencies: a genealogical approach. Genetics 160:741-751.
-
(2002)
Genetics
, vol.160
, pp. 741-751
-
-
Berthier, P.1
Beaumont, M.A.2
Cornuet, J.-M.3
Luikart, G.4
-
6
-
-
34848827224
-
Patterns of damage in genomic DNA sequences from a Neandertal
-
Briggs AW, Stenzel U, Johnson PLF, Green RE, Kelso J, Prüfer K, Meyer M, Krause J, RonanMT, LachmannM, et al. 2007. Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci U S A. 104:14616-14621.
-
(2007)
Proc Natl Acad Sci U S A.
, vol.104
, pp. 14616-14621
-
-
Briggs, A.W.1
Stenzel, U.2
Johnson, P.L.F.3
Green, R.E.4
Kelso, J.5
Prüfer, K.6
Meyer, M.7
Krause, J.8
Lachmannm, R.9
-
7
-
-
77950862213
-
Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA
-
Briggs AW, Stenzel U, Meyer M, Krause J, Kircher M, Pääbo S. 2010. Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA. Nucleic Acids Res. 38:e87.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Briggs, A.W.1
Stenzel, U.2
Meyer, M.3
Krause, J.4
Kircher, M.5
Pääbo, S.6
-
8
-
-
79953101272
-
Vanishing native American dog lineages
-
Castroviejo-Fisher S, Skoglund P, Valadez R, Vila C, Leonard J. 2011. Vanishing native American dog lineages. BMC Evol Biol. 11:73.
-
(2011)
BMC Evol Biol.
, vol.11
, pp. 73
-
-
Castroviejo-Fisher, S.1
Skoglund, P.2
Valadez, R.3
Vila, C.4
Leonard, J.5
-
9
-
-
33646483919
-
Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA
-
Chan YL, Anderson CNK, Hadly EA. 2006. Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA. PLoS Genet. 2:451-460.
-
(2006)
PLoS Genet.
, vol.2
, pp. 451-460
-
-
Chan, Y.L.1
Anderson, C.N.K.2
Hadly, E.A.3
-
10
-
-
78951476873
-
The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes
-
Chikhi L, Sousa VC, Luisi P, Goossens B, Beaumont MA. 2010. The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes. Genetics 186:983-995.
-
(2010)
Genetics
, vol.186
, pp. 983-995
-
-
Chikhi, L.1
Sousa, V.C.2
Luisi, P.3
Goossens, B.4
Beaumont, M.A.5
-
11
-
-
84855947176
-
Abc: An R package for approximate Bayesian computation (ABC)
-
Csillery K, Francois O, Blum MGB. 2012. abc: an R package for approximate Bayesian computation (ABC). Methods Ecol Evol. 25: 410-418.
-
(2012)
Methods Ecol Evol.
, vol.25
, pp. 410-418
-
-
Csillery, K.1
Francois, O.2
Blum, M.G.B.3
-
12
-
-
84873583931
-
Geographic sampling scheme as a determinant of the major axis of genetic variation in principal components analysis
-
DeGiorgio M, Rosenberg NA. 2013. Geographic sampling scheme as a determinant of the major axis of genetic variation in principal components analysis. Mol Biol Evol. 30:480-488.
-
(2013)
Mol Biol Evol.
, vol.30
, pp. 480-488
-
-
Degiorgio, M.1
Rosenberg, N.A.2
-
13
-
-
65849346286
-
Using classical population genetics tools with heterochroneous data: Time matters!
-
Depaulis F, Orlando L, Hanni C. 2009. Using classical population genetics tools with heterochroneous data: time matters! PLoS One 4: e5541.
-
(2009)
PLoS One
, vol.4
-
-
Depaulis, F.1
Orlando, L.2
Hanni, C.3
-
14
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 7:214.
-
(2007)
BMC Evol Biol.
, vol.7
, pp. 214
-
-
Drummond, A.1
Rambaut, A.2
-
15
-
-
17744381574
-
Bayesian coalescent inference of past population dynamics from molecular sequences
-
Drummond AJ, Rambaut A, Shapiro B, Pybus OG. 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol. 22:1185-1192.
-
(2005)
Mol Biol Evol.
, vol.22
, pp. 1185-1192
-
-
Drummond, A.J.1
Rambaut, A.2
Shapiro, B.3
Pybus, O.G.4
-
16
-
-
79961039058
-
Testing for ancient admixture between closely related populations
-
Durand EY, Patterson N, Reich D, Slatkin M. 2011. Testing for ancient admixture between closely related populations. Mol Biol Evol. 28: 2239-2252.
-
(2011)
Mol Biol Evol.
, vol.28
, pp. 2239-2252
-
-
Durand, E.Y.1
Patterson, N.2
Reich, D.3
Slatkin, M.4
-
17
-
-
78049415423
-
Analysis of population structure: A unifying framework and novel methods based on sparse factor analysis
-
Engelhardt BE, Stephens M. 2010. Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis. PLoS Genet. 6:e1001117.
-
(2010)
PLoS Genet.
, vol.6
-
-
Engelhardt, B.E.1
Stephens, M.2
-
18
-
-
79954469204
-
Fastsimcoal: A continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios
-
Excoffier L, Foll M. 2011. Fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics 27:1332-1334.
-
(2011)
Bioinformatics
, vol.27
, pp. 1332-1334
-
-
Excoffier, L.1
Foll, M.2
-
19
-
-
77952136530
-
A draft sequence of the neandertal genome
-
Green RE, Krause J, Briggs AW, Maricic T, StenzelU, KircherM, Patterson N, Li H, Zhai WW, Fritz MHY, et al. 2010. A draft sequence of the neandertal genome. Science 328:710-722.
-
(2010)
Science
, vol.328
, pp. 710-722
-
-
Green, R.E.1
Krause, J.2
Briggs, A.W.3
Maricic, T.4
Kircherm, S.5
Patterson, N.6
Li, H.7
Zhai, W.W.8
Fritz, M.H.Y.9
-
20
-
-
27744447195
-
Ancient DNA from the first European farmers in 7500-year-old Neolithic sites
-
Haak W, Forster P, Bramanti B, Matsumura S, Brandt G, Tanzer M, Villems R, Renfrew C, Gronenborn D, Alt KW, et al. 2005. Ancient DNA from the first European farmers in 7500-year-old Neolithic sites. Science 310:1016-1018.
-
(2005)
Science
, vol.310
, pp. 1016-1018
-
-
Haak, W.1
Forster, P.2
Bramanti, B.3
Matsumura, S.4
Brandt, G.5
Tanzer, M.6
Villems, R.7
Renfrew, C.8
Gronenborn, D.9
Alt, K.W.10
-
21
-
-
0021688630
-
DNA sequence from the quagga, an extinct member of the horse family
-
Higuchi R, Bowman B, Freiberg M, Ryder OA, Wilson AC. 1984. DNA sequence from the quagga, an extinct member of the horse family. Nature 312:282-284.
-
(1984)
Nature
, vol.312
, pp. 282-284
-
-
Higuchi, R.1
Bowman, B.2
Freiberg, M.3
Ryder, O.A.4
Wilson, A.C.5
-
22
-
-
79954569160
-
Skyline-plot methods for estimating demographic history from nucleotide sequences
-
Ho SY, Shapiro B. 2011. Skyline-plot methods for estimating demographic history from nucleotide sequences. Mol Ecol Resour. 11: 423-434.
-
(2011)
Mol Ecol Resour.
, vol.11
, pp. 423-434
-
-
Ho, S.Y.1
Shapiro, B.2
-
24
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
Hudson RR. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18:337-338.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.R.1
-
25
-
-
70350700909
-
COMPASS: A program for generating serial samples under an infinite sites model
-
Jakobsson M. 2009. COMPASS: a program for generating serial samples under an infinite sites model. Bioinformatics 25:2845-2847.
-
(2009)
Bioinformatics
, vol.25
, pp. 2845-2847
-
-
Jakobsson, M.1
-
26
-
-
0035614380
-
Coalescent theory for seed bank models
-
Kaj I, Krone SM, Lascoux M. 2001. Coalescent theory for seed bank models. J Appl Probab. 38:285-300.
-
(2001)
J Appl Probab.
, vol.38
, pp. 285-300
-
-
Kaj, I.1
Krone, S.M.2
Lascoux, M.3
-
27
-
-
84863230079
-
New insights into the Tyrolean Iceman's origin and phenotype as inferred by wholegenome sequencing
-
Keller A, Graefen A, Ball M, Matzas M, Boisguerin V, Maixner F, Leidinger P, Backes C, Khairat R, Forster M, et al. 2012. New insights into the Tyrolean Iceman's origin and phenotype as inferred by wholegenome sequencing. Nat Commun. 3:698.
-
(2012)
Nat Commun.
, vol.3
, pp. 698
-
-
Keller, A.1
Graefen, A.2
Ball, M.3
Matzas, M.4
Boisguerin, V.5
Maixner, F.6
Leidinger, P.7
Backes, C.8
Khairat, R.9
Forster, M.10
-
29
-
-
75749095504
-
A complete mtDNA genome of an early modern human from Kostenki, Russia
-
Krause J, Briggs AW, Kircher M, Maricic T, Zwyns N, Derevianko A, Pääbo S. 2010. A complete mtDNA genome of an early modern human from Kostenki, Russia. Curr Biol. 20:231-236.
-
(2010)
Curr Biol.
, vol.20
, pp. 231-236
-
-
Krause, J.1
Briggs, A.W.2
Kircher, M.3
Maricic, T.4
Zwyns, N.5
Derevianko, A.6
Pääbo, S.7
-
30
-
-
0001330047
-
The genetics of Dacus oleae. V. Changes of esterase polymorphism in a natural population following insecticide control-selection or drift?
-
Krimbas CB, Tsakas S. 1971. The genetics of Dacus oleae. V. Changes of esterase polymorphism in a natural population following insecticide control-selection or drift? Evolution 25:454-460.
-
(1971)
Evolution
, vol.25
, pp. 454-460
-
-
Krimbas, C.B.1
Tsakas, S.2
-
31
-
-
79960914105
-
Inference of human population history from individual whole-genome sequences
-
Li H, Durbin R. 2011. Inference of human population history from individual whole-genome sequences. Nature 475:493-496.
-
(2011)
Nature
, vol.475
, pp. 493-496
-
-
Li, H.1
Durbin, R.2
-
32
-
-
73349108482
-
A genealogical interpretation of principal components analysis
-
McVean G. 2009. A genealogical interpretation of principal components analysis. PLoS Genet. 5:e1000686.
-
(2009)
PLoS Genet.
, vol.5
-
-
McVean, G.1
-
33
-
-
84892572735
-
A mitochondrial genome sequence of a hominin from Sima de los Huesos
-
Meyer M, Fu Q, Aximu-Petri A, Glocke I, Nickel B, Arsuaga J-L, Martínez I, Gracia A, de Castro JMB, Carbonell E, et al. 2014. A mitochondrial genome sequence of a hominin from Sima de los Huesos. Nature 505:403-406.
-
(2014)
Nature
, vol.505
, pp. 403-406
-
-
Meyer, M.1
Fu, Q.2
Aximu-Petri, A.3
Glocke, I.4
Nickel, B.5
Arsuaga, J.-L.6
Martínez, I.7
Gracia, A.8
De Castro, J.M.B.9
Carbonell, E.10
-
34
-
-
84867331947
-
A high-coverage genome sequence from an archaic Denisovan individual
-
Meyer M, Kircher M, Gansauge M-T, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, et al. 2012. A high-coverage genome sequence from an archaic Denisovan individual. Science 338: 222-226.
-
(2012)
Science
, vol.338
, pp. 222-226
-
-
Meyer, M.1
Kircher, M.2
Gansauge, M.-T.3
Li, H.4
Racimo, F.5
Mallick, S.6
Schraiber, J.G.7
Jay, F.8
Prüfer, K.9
De Filippo, C.10
-
35
-
-
84865503238
-
Statistical guidelines for detecting past population shifts using ancient DNA
-
Mourier T, Ho SY, Gilbert MTP, Willerslev E, Orlando L. 2012. Statistical guidelines for detecting past population shifts using ancient DNA. Mol Biol Evol. 29:2241-2251.
-
(2012)
Mol Biol Evol.
, vol.29
, pp. 2241-2251
-
-
Mourier, T.1
Ho, S.Y.2
Gilbert, M.T.P.3
Willerslev, E.4
Orlando, L.5
-
36
-
-
77955730964
-
Combining contemporary and ancient DNA in population genetic and phylogeographical studies
-
Navascues M, Depaulis F, Emerson BC. 2010. Combining contemporary and ancient DNA in population genetic and phylogeographical studies. Mol Ecol Resour. 10:760-772.
-
(2010)
Mol Ecol Resour.
, vol.10
, pp. 760-772
-
-
Navascues, M.1
Depaulis, F.2
Emerson, B.C.3
-
37
-
-
0006919926
-
Analysis of gene diversity in subdivided populations
-
Nei M. 1973. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci U S A. 70:3321-3323.
-
(1973)
Proc Natl Acad Sci U S A.
, vol.70
, pp. 3321-3323
-
-
Nei, M.1
-
38
-
-
0034967295
-
Distinguishing migration from isolation: A Markov chain Monte Carlo approach
-
Nielsen R, Wakeley J. 2001. Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158:885-896.
-
(2001)
Genetics
, vol.158
, pp. 885-896
-
-
Nielsen, R.1
Wakeley, J.2
-
39
-
-
0032231870
-
On the probability of Neanderthal ancestry
-
Nordborg M. 1998. On the probability of Neanderthal ancestry. Am J Hum Genet. 63:1237.
-
(1998)
Am J Hum Genet.
, vol.63
, pp. 1237
-
-
Nordborg, M.1
-
40
-
-
42649093791
-
Interpreting principal component analyses of spatial population genetic variation
-
Novembre J, Stephens M. 2008. Interpreting principal component analyses of spatial population genetic variation. Nat Genet. 40:646-649.
-
(2008)
Nat Genet.
, vol.40
, pp. 646-649
-
-
Novembre, J.1
Stephens, M.2
-
41
-
-
77956484961
-
Temporal genetic change in the last remaining population of woolly mammoth
-
Nyström V, Dalén L, Vartanyan S, Lidén K, Ryman N, Angerbjörn A. 2010. Temporal genetic change in the last remaining population of woolly mammoth. Proc R Soc B Biol Sci. 277:2331-2337.
-
(2010)
Proc R Soc B Biol Sci.
, vol.277
, pp. 2331-2337
-
-
Nyström, V.1
Dalén, L.2
Vartanyan, S.3
Lidén, K.4
Ryman, N.5
Angerbjörn, A.6
-
42
-
-
84863725612
-
Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation
-
Nyström V, Humphrey J, Skoglund P, Mc Keown NJ, Vartanyan S, Shaw PW, Liden K, Jakobsson M, Barnes I, Angerbjörn A, et al. 2012. Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation. Mol Ecol. 21:3391-3402.
-
(2012)
Mol Ecol.
, vol.21
, pp. 3391-3402
-
-
Nyström, V.1
Humphrey, J.2
Skoglund, P.3
Mc Keown, N.J.4
Vartanyan, S.5
Shaw, P.W.6
Liden, K.7
Jakobsson, M.8
Barnes, I.9
Angerbjörn, A.10
-
43
-
-
84879888373
-
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
-
Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, et al. 2013. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature 499:74-78.
-
(2013)
Nature
, vol.499
, pp. 74-78
-
-
Orlando, L.1
Ginolhac, A.2
Zhang, G.3
Froese, D.4
Albrechtsen, A.5
Stiller, M.6
Schubert, M.7
Cappellini, E.8
Petersen, B.9
Moltke, I.10
-
44
-
-
0021802416
-
Molecular cloning of ancient Egyptian mummy DNA
-
Pääbo S. 1985. Molecular cloning of ancient Egyptian mummy DNA. Nature 314:644-645.
-
(1985)
Nature
, vol.314
, pp. 644-645
-
-
Pääbo, S.1
-
45
-
-
84869057650
-
Ancient admixture in human history
-
Patterson N, Moorjani P, Luo Y, Mallick S, Rohland N, Zhan Y, Genschoreck T, Webster T, Reich D. 2012. Ancient admixture in human history. Genetics 192:1065-1093.
-
(2012)
Genetics
, vol.192
, pp. 1065-1093
-
-
Patterson, N.1
Moorjani, P.2
Luo, Y.3
Mallick, S.4
Rohland, N.5
Zhan, Y.6
Genschoreck, T.7
Webster, T.8
Reich, D.9
-
47
-
-
84869026948
-
Inference of population splits and mixtures from genome-wide allele frequency data
-
Pickrell JK, Pritchard JK. 2012. Inference of population splits and mixtures from genome-wide allele frequency data. PLoS Genet. 8:e1002967.
-
(2012)
PLoS Genet.
, vol.8
-
-
Pickrell, J.K.1
Pritchard, J.K.2
-
49
-
-
84892365780
-
The complete genome sequence of a Neanderthal from the Altai Mountains
-
Prufer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, et al. 2014. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature 505:43-49.
-
(2014)
Nature
, vol.505
, pp. 43-49
-
-
Prufer, K.1
Racimo, F.2
Patterson, N.3
Jay, F.4
Sankararaman, S.5
Sawyer, S.6
Heinze, A.7
Renaud, G.8
Sudmant, P.H.9
De Filippo, C.10
-
51
-
-
84892367625
-
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
-
Raghavan M, Skoglund P, Graf KE, Metspalu M, Albrechtsen A, Moltke I, Rasmussen S, Stafford TW Jr, Orlando L, Metspalu E, et al. 2014. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature 505:87-91.
-
(2014)
Nature
, vol.505
, pp. 87-91
-
-
Raghavan, M.1
Skoglund, P.2
Graf, K.E.3
Metspalu, M.4
Albrechtsen, A.5
Moltke, I.6
Rasmussen, S.7
Stafford Jr., T.W.8
Orlando, L.9
Metspalu, E.10
-
52
-
-
26944492704
-
Detecting past population bottlenecks using temporal genetic data
-
Ramakrishnan U, Hadly EA, Mountain JL. 2005. Detecting past population bottlenecks using temporal genetic data. Mol Ecol. 14: 2915-2922.
-
(2005)
Mol Ecol.
, vol.14
, pp. 2915-2922
-
-
Ramakrishnan, U.1
Hadly, E.A.2
Mountain, J.L.3
-
53
-
-
62849103887
-
Using phylochronology to reveal cryptic population histories: Review and synthesis of 29 ancient DNA studies
-
Ramakrishnan UMA, Hadly EA. 2009. Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Mol Ecol. 18:1310-1330.
-
(2009)
Mol Ecol.
, vol.18
, pp. 1310-1330
-
-
Ramakrishnan, U.M.A.1
Hadly, E.A.2
-
54
-
-
76749141381
-
Ancient human genome sequence of an extinct Palaeo-Eskimo
-
Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, Moltke I, Metspalu M, Metspalu E, Kivisild T, Gupta R, et al. 2010. Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463: 757-762.
-
(2010)
Nature
, vol.463
, pp. 757-762
-
-
Rasmussen, M.1
Li, Y.2
Lindgreen, S.3
Pedersen, J.S.4
Albrechtsen, A.5
Moltke, I.6
Metspalu, M.7
Metspalu, E.8
Kivisild, T.9
Gupta, R.10
-
55
-
-
78650850475
-
Genetic history of an archaic hominin group from Denisova Cave in Siberia
-
Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PLF, et al. 2010. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature 468: 1053-1060.
-
(2010)
Nature
, vol.468
, pp. 1053-1060
-
-
Reich, D.1
Green, R.E.2
Kircher, M.3
Krause, J.4
Patterson, N.5
Durand, E.Y.6
Viola, B.7
Briggs, A.W.8
Stenzel, U.9
Johnson, P.L.F.10
-
56
-
-
70349472875
-
Reconstructing Indian population history
-
Reich D, Thangaraj K, Patterson N, Price AL, Singh L. 2009. Reconstructing Indian population history. Nature 461:489-494.
-
(2009)
Nature
, vol.461
, pp. 489-494
-
-
Reich, D.1
Thangaraj, K.2
Patterson, N.3
Price, A.L.4
Singh, L.5
-
58
-
-
33750437374
-
Clines, clusters, and the effect of study design on the inference of human population structure
-
Rosenberg NA, Mahajan S, Ramachandran S, Zhao C, Pritchard JK, Feldman MW. 2005. Clines, clusters, and the effect of study design on the inference of human population structure. PLoS Genet. 1:e70.
-
(2005)
PLoS Genet.
, vol.1
-
-
Rosenberg, N.A.1
Mahajan, S.2
Ramachandran, S.3
Zhao, C.4
Pritchard, J.K.5
Feldman, M.W.6
-
59
-
-
84865251657
-
Genomic affinities of two 7 000-year-old Iberian hunter-gatherers
-
Sánchez-Quinto F, Schroeder H, Ramirez O, Ávila-Arcos María C, Pybus M, Olalde I, Velazquez Amhed MV, Marcos María Encina P, Encinas Julio Manuel V, Bertranpetit J, et al. 2012. Genomic affinities of two 7, 000-year-old Iberian hunter-gatherers. Curr Biol. 22: 1494-1499.
-
(2012)
Curr Biol.
, vol.22
, pp. 1494-1499
-
-
Sánchez-Quinto, F.1
Schroeder, H.2
Ramirez, O.3
Ávila-Arcos María, C.4
Pybus, M.5
Olalde, I.6
Velazquez Amhed, M.V.7
Marcos María Encina, P.8
Encinas Julio Manuel, V.9
Bertranpetit, J.10
-
60
-
-
84867669367
-
Genomic variation in seven Khoe-San groups reveals adaptation and complex African history
-
Schlebusch CM, Skoglund P, Sjödin P, Gattepaille LM, Hernandez D, Jay F, Li S, De Jongh M, Singleton A, Blum MGB, et al. 2012. Genomic variation in seven Khoe-San groups reveals adaptation and complex African history. Science 338:374-379.
-
(2012)
Science
, vol.338
, pp. 374-379
-
-
Schlebusch, C.M.1
Skoglund, P.2
Sjödin, P.3
Gattepaille, L.M.4
Hernandez, D.5
Jay, F.6
Li, S.7
De Jongh, M.8
Singleton, A.9
Blum, M.G.B.10
-
61
-
-
19344377078
-
No evidence of Neandertal mtDNA contribution to early modern humans
-
Serre D, Langaney A, Chech M, Teschler-Nicola M, Paunovic M, Mennecier P, Hofreiter M, Possnert G, Pääbo S. 2004. No evidence of Neandertal mtDNA contribution to early modern humans. PLoS Biol. 2:e57.
-
(2004)
PLoS Biol.
, vol.2
-
-
Serre, D.1
Langaney, A.2
Chech, M.3
Teschler-Nicola, M.4
Paunovic, M.5
Mennecier, P.6
Hofreiter, M.7
Possnert, G.8
Pääbo, S.9
-
62
-
-
4644240756
-
Evidence for gradients of human genetic diversity within and among continents
-
Serre D, Pääbo S. 2004. Evidence for gradients of human genetic diversity within and among continents. Genome Res. 14:1679-1685.
-
(2004)
Genome Res.
, vol.14
, pp. 1679-1685
-
-
Serre, D.1
Pääbo, S.2
-
63
-
-
84892911863
-
A Paleogenomic perspective on evolution and gene function: New insights from ancient DNA
-
Shapiro B, Hofreiter M. 2014. A Paleogenomic perspective on evolution and gene function: new insights from ancient DNA. Science 343: 1236573.
-
(2014)
Science
, vol.343
, pp. 1236573
-
-
Shapiro, B.1
Hofreiter, M.2
-
64
-
-
84879621036
-
Estimating variable effective population sizes from multiple genomes: A sequentially Markov conditional sampling distribution approach
-
Sheehan S, Harris K, Song YS. 2013. Estimating variable effective population sizes from multiple genomes: a sequentially Markov conditional sampling distribution approach. Genetics 194:647-662.
-
(2013)
Genetics
, vol.194
, pp. 647-662
-
-
Sheehan, S.1
Harris, K.2
Song, Y.S.3
-
65
-
-
84899580461
-
Assessing the maximum contribution from ancient populations
-
Sjödin P, Skoglund P, Jakobsson M. 2014. Assessing the maximum contribution from ancient populations. Mol Biol Evol. 31:1248-1260.
-
(2014)
Mol Biol Evol.
, vol.31
, pp. 1248-1260
-
-
Sjödin, P.1
Skoglund, P.2
Jakobsson, M.3
-
66
-
-
79952846662
-
Estimation of population divergence times from non-overlapping genomic sequences: Examples from dogs and wolves
-
Skoglund P, Götherström A, Jakobsson M. 2011. Estimation of population divergence times from non-overlapping genomic sequences: examples from dogs and wolves. Mol Biol Evol. 28:1505-1517.
-
(2011)
Mol Biol Evol.
, vol.28
, pp. 1505-1517
-
-
Skoglund, P.1
Götherström, A.2
Jakobsson, M.3
-
67
-
-
84860132302
-
Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe
-
Skoglund P, Malmström H, Raghavan M, Storå J, Hall P, Willerslev E, Gilbert MTP, Götherström A, Jakobsson M. 2012. Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe. Science 336:466-469.
-
(2012)
Science
, vol.336
, pp. 466-469
-
-
Skoglund, P.1
Malmström, H.2
Raghavan, M.3
Storå, J.4
Hall, P.5
Willerslev, E.6
Gilbert, M.T.P.7
Götherström, A.8
Jakobsson, M.9
-
68
-
-
84893850989
-
Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal
-
Skoglund P, Northoff BH, Shunkov MV, Derevianko AP, Pääbo S, Krause J, Jakobsson M. 2014. Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal. Proc Natl Acad Sci U S A. 111:2229-2234.
-
(2014)
Proc Natl Acad Sci U S A.
, vol.111
, pp. 2229-2234
-
-
Skoglund, P.1
Northoff, B.H.2
Shunkov, M.V.3
Derevianko, A.P.4
Pääbo, S.5
Krause, J.6
Jakobsson, M.7
-
69
-
-
0026050476
-
Inbreeding coefficients and coalescence times
-
Slatkin M. 1991. Inbreeding coefficients and coalescence times. Genet Res. 58:167-175.
-
(1991)
Genet Res.
, vol.58
, pp. 167-175
-
-
Slatkin, M.1
-
71
-
-
0027498622
-
Holocene dwarf mammoths from Wrangel Island in the Siberian Arctic
-
Vartanyan SL, Garutt VE, Sher AV. 1993. Holocene dwarf mammoths from Wrangel Island in the Siberian Arctic. Nature 362:337-340.
-
(1993)
Nature
, vol.362
, pp. 337-340
-
-
Vartanyan, S.L.1
Garutt, V.E.2
Sher, A.V.3
-
72
-
-
29444451610
-
Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes
-
Voight BF, Adams AM, Frisse LA, Qian Y, Hudson RR, Di Rienzo A. 2005. Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes. Proc Natl Acad Sci U S A. 102:18508-18513.
-
(2005)
Proc Natl Acad Sci U S A.
, vol.102
, pp. 18508-18513
-
-
Voight, B.F.1
Adams, A.M.2
Frisse, L.A.3
Qian, Y.4
Hudson, R.R.5
Di Rienzo, A.6
-
73
-
-
0035704882
-
A pseudo-likelihood method for estimating effective population size from temporally spaced samples
-
Wang J. 2001. A pseudo-likelihood method for estimating effective population size from temporally spaced samples. Genet Res. 78:243-258.
-
(2001)
Genet Res.
, vol.78
, pp. 243-258
-
-
Wang, J.1
-
74
-
-
0001162795
-
Temporal variation in allele frequencies: Testing the right hypothesis
-
Waples RS. 1989. Temporal variation in allele frequencies: testing the right hypothesis. Evolution 43:1236-1251.
-
(1989)
Evolution
, vol.43
, pp. 1236-1251
-
-
Waples, R.S.1
-
75
-
-
0003752712
-
-
Sunderland (MA): Sinauer Associates, Inc.
-
Weir BS. 1996. Genetic data analysis II. Sunderland (MA): Sinauer Associates, Inc.
-
(1996)
Genetic Data Analysis II
-
-
Weir, B.S.1
-
76
-
-
0000439372
-
Breeding structure of populations in relation to speciation
-
Wright S. 1940. Breeding structure of populations in relation to speciation. Am Nat. 74:232-248.
-
(1940)
Am Nat.
, vol.74
, pp. 232-248
-
-
Wright, S.1
-
77
-
-
0000948495
-
Population structure in evolution
-
Wright S. 1949. Population structure in evolution. Proc Am Philos Soc. 93:471-478.
-
(1949)
Proc Am Philos Soc.
, vol.93
, pp. 471-478
-
-
Wright, S.1
-
78
-
-
84890417804
-
The genetical structure of populations
-
Wright S. 1951. The genetical structure of populations. Ann Eugen. 15: 323-354.
-
(1951)
Ann Eugen.
, vol.15
, pp. 323-354
-
-
Wright, S.1
|