메뉴 건너뛰기




Volumn 10, Issue 5, 2010, Pages 760-772

Combining contemporary and ancient DNA in population genetic and phylogeographical studies

Author keywords

Ancient DNA; Heterochronous data; Phylogeography; Serial coalescence

Indexed keywords


EID: 77955730964     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2010.02895.x     Document Type: Article
Times cited : (46)

References (97)
  • 1
    • 4944263648 scopus 로고    scopus 로고
    • A robust measure of HIV-1 population turnover within chronically infected individuals
    • Achaz G, Palmer S, Kearney M. A robust measure of HIV-1 population turnover within chronically infected individuals. Molecular Biology and Evolution 2004, 21:1902-1912.
    • (2004) Molecular Biology and Evolution , vol.21 , pp. 1902-1912
    • Achaz, G.1    Palmer, S.2    Kearney, M.3
  • 2
    • 65449135172 scopus 로고    scopus 로고
    • Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data
    • Allentoft ME, Schuster SC, Holdaway RN. Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data. BioTechniques 2009, 46:195-200.
    • (2009) BioTechniques , vol.46 , pp. 195-200
    • Allentoft, M.E.1    Schuster, S.C.2    Holdaway, R.N.3
  • 3
    • 17444424295 scopus 로고    scopus 로고
    • Serial SimCoal: a population genetics model for data from multiple populations and points in time
    • Anderson CN, Ramakrishnan U, Chan YL, Hadly EA. Serial SimCoal: a population genetics model for data from multiple populations and points in time. Bioinformatics 2005, 21:1733-1734.
    • (2005) Bioinformatics , vol.21 , pp. 1733-1734
    • Anderson, C.N.1    Ramakrishnan, U.2    Chan, Y.L.3    Hadly, E.A.4
  • 4
    • 77749261568 scopus 로고    scopus 로고
    • Coalescent simulation of intracodon recombination
    • Arenas M, Posada D. Coalescent simulation of intracodon recombination. Genetics 2009, 184:429-437.
    • (2009) Genetics , vol.184 , pp. 429-437
    • Arenas, M.1    Posada, D.2
  • 5
    • 0033601201 scopus 로고    scopus 로고
    • Linkage disequilibrium and recombination in hominid mitochondrial DNA
    • Awadalla P, Eyre-Walker A, Smith JM. Linkage disequilibrium and recombination in hominid mitochondrial DNA. Science 1999, 286:2524-2525.
    • (1999) Science , vol.286 , pp. 2524-2525
    • Awadalla, P.1    Eyre-Walker, A.2    Smith, J.M.3
  • 7
    • 0037155601 scopus 로고    scopus 로고
    • Dynamics of Pleistocene population extinctions in Beringian brown bears
    • Barnes I, Matheus P, Shapiro B, Jensen D, Cooper A. Dynamics of Pleistocene population extinctions in Beringian brown bears. Science 2002, 295:2267-2270.
    • (2002) Science , vol.295 , pp. 2267-2270
    • Barnes, I.1    Matheus, P.2    Shapiro, B.3    Jensen, D.4    Cooper, A.5
  • 8
    • 63849272881 scopus 로고    scopus 로고
    • Phylogeography of lions (Panthera leo ssp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity
    • Barnett R, Shapiro B, Barnes I. Phylogeography of lions (Panthera leo ssp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity. Molecular Ecology 2009, 18:1668-1677.
    • (2009) Molecular Ecology , vol.18 , pp. 1668-1677
    • Barnett, R.1    Shapiro, B.2    Barnes, I.3
  • 9
    • 33646253454 scopus 로고    scopus 로고
    • Population size does not influence mitochondrial genetic diversity in animals
    • Bazin E, Glemin S, Galtier N. Population size does not influence mitochondrial genetic diversity in animals. Science 2006, 312:570-572.
    • (2006) Science , vol.312 , pp. 570-572
    • Bazin, E.1    Glemin, S.2    Galtier, N.3
  • 11
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • Beaumont MA, Zhang W, Balding DJ. Approximate Bayesian computation in population genetics. Genetics 2002, 162:2025-2035.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.A.1    Zhang, W.2    Balding, D.J.3
  • 12
    • 58149282899 scopus 로고    scopus 로고
    • Joint determination of topology, divergence time, and immigration in population trees
    • McDonald Institute for Archaeological Research, Cambridge
    • Beaumont MA, Matsumura S, Forster P, Renfrew C. Joint determination of topology, divergence time, and immigration in population trees. Simulation, Genetics, and Human Prehistory 2006, McDonald Institute for Archaeological Research, Cambridge
    • (2006) Simulation, Genetics, and Human Prehistory
    • Beaumont, M.A.1    Matsumura, S.2    Forster, P.3    Renfrew, C.4
  • 13
    • 65849163000 scopus 로고    scopus 로고
    • Learning about modes of speciation by computational approaches
    • Becquet C, Przeworski M. Learning about modes of speciation by computational approaches. Evolution 2009, 63:2547-2562.
    • (2009) Evolution , vol.63 , pp. 2547-2562
    • Becquet, C.1    Przeworski, M.2
  • 15
    • 60549090048 scopus 로고    scopus 로고
    • Comparing models on the genealogical relationships among Nanderthal, Cro-Magnoid and modern Europeans by serial coalescent simulations
    • Belle EMS, Benazzo A, Ghirotto S, Colonna V, Barbujani G. Comparing models on the genealogical relationships among Nanderthal, Cro-Magnoid and modern Europeans by serial coalescent simulations. Heredity 2009, 102:218-225.
    • (2009) Heredity , vol.102 , pp. 218-225
    • Belle, E.M.S.1    Benazzo, A.2    Ghirotto, S.3    Colonna, V.4    Barbujani, G.5
  • 16
    • 33846057774 scopus 로고    scopus 로고
    • How did life become so diverse? The dynamics of diversification according to the fossil record and molecular phylogenetics
    • Benton MJ, Emerson BC. How did life become so diverse? The dynamics of diversification according to the fossil record and molecular phylogenetics. Palaeontology 2007, 50:1-19.
    • (2007) Palaeontology , vol.50 , pp. 1-19
    • Benton, M.J.1    Emerson, B.C.2
  • 17
    • 73549122582 scopus 로고    scopus 로고
    • Non-linear regression models for approximate bayesian computation
    • Blum M, François O. Non-linear regression models for approximate bayesian computation. Statistics and Computing 2010, 20:63-73.
    • (2010) Statistics and Computing , vol.20 , pp. 63-73
    • Blum, M.1    François, O.2
  • 18
    • 0036318165 scopus 로고    scopus 로고
    • IBD (isolation by distance): a program for analyses of isolation by distance
    • Bohonak AJ. IBD (isolation by distance): a program for analyses of isolation by distance. Journal of Heredity 2002, 93:153-154.
    • (2002) Journal of Heredity , vol.93 , pp. 153-154
    • Bohonak, A.J.1
  • 19
    • 70349653632 scopus 로고    scopus 로고
    • Genetic discontinuity between local hunter-gatherers and central Europe's first farmers
    • Bramanti B, Thomas MG, Haak W. Genetic discontinuity between local hunter-gatherers and central Europe's first farmers. Science 2009, 326:137-140.
    • (2009) Science , vol.326 , pp. 137-140
    • Bramanti, B.1    Thomas, M.G.2    Haak, W.3
  • 20
    • 67650831473 scopus 로고    scopus 로고
    • Targeted retrieval and analysis of five neandertal mtDNA genomes
    • Briggs AW, Good JM, Green RE. Targeted retrieval and analysis of five neandertal mtDNA genomes. Science 2009, 325:318-321.
    • (2009) Science , vol.325 , pp. 318-321
    • Briggs, A.W.1    Good, J.M.2    Green, R.E.3
  • 21
    • 33646483919 scopus 로고    scopus 로고
    • Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA
    • Chan YL, Anderson CNK, Hadly EA. Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA. PLoS Genetics 2006, 2:451-460.
    • (2006) PLoS Genetics , vol.2 , pp. 451-460
    • Chan, Y.L.1    Anderson, C.N.K.2    Hadly, E.A.3
  • 22
    • 0034682945 scopus 로고    scopus 로고
    • Ancient DNA: do it right or not at all
    • Cooper A, Poinar HN. Ancient DNA: do it right or not at all. Science 2000, 289:1139-1139.
    • (2000) Science , vol.289 , pp. 1139-1139
    • Cooper, A.1    Poinar, H.N.2
  • 23
    • 56649113038 scopus 로고    scopus 로고
    • Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation
    • Cornuet J-M, Santos F, Beaumont MA. Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation. Bioinformatics 2008, 24:2713-2719.
    • (2008) Bioinformatics , vol.24 , pp. 2713-2719
    • Cornuet, J.-M.1    Santos, F.2    Beaumont, M.A.3
  • 25
    • 71549132288 scopus 로고    scopus 로고
    • Time dependency of molecular rates in ancient DNA data sets, a sampling artifact?
    • Debruyne R, Poinar HN. Time dependency of molecular rates in ancient DNA data sets, a sampling artifact? Systematic Biology 2009, 58:348-359.
    • (2009) Systematic Biology , vol.58 , pp. 348-359
    • Debruyne, R.1    Poinar, H.N.2
  • 26
    • 65849346286 scopus 로고    scopus 로고
    • Using classical population genetic tools with heterochronous data: time matters!
    • Depaulis F, Orlando L, Hänni C. Using classical population genetic tools with heterochronous data: time matters!. PLoS ONE 2009, 4:e5541.
    • (2009) PLoS ONE , vol.4
    • Depaulis, F.1    Orlando, L.2    Hänni, C.3
  • 27
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 2007, 7:214.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 28
    • 0036021407 scopus 로고    scopus 로고
    • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
    • Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 2002, 161:1307-1320.
    • (2002) Genetics , vol.161 , pp. 1307-1320
    • Drummond, A.J.1    Nicholls, G.K.2    Rodrigo, A.G.3    Solomon, W.4
  • 30
  • 31
    • 84873591165 scopus 로고    scopus 로고
    • Analysis of population subdivision
    • Balding DJ, Bishop M, Cannings C. eds, Wiley, Chichester
    • Excoffier L. Analysis of population subdivision. Handbook of Statistical Genetics 2007, 980-1020. Balding DJBishop MCannings C. eds, Wiley, Chichester, pp
    • (2007) Handbook of Statistical Genetics , pp. 980-1020
    • Excoffier, L.1
  • 32
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data
    • Excoffier L, Smouse PE, Quattro JM. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 33
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin (version 3.0): an integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 2005, 1:47-50.
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 34
    • 65349191801 scopus 로고    scopus 로고
    • Genetic evidence of geographic groups among neanderthals
    • Fabre V, Condemi S, Degioanni A. Genetic evidence of geographic groups among neanderthals. PLoS ONE 2009, 4:e5151.
    • (2009) PLoS ONE , vol.4
    • Fabre, V.1    Condemi, S.2    Degioanni, A.3
  • 35
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: a maximum likelihood approach
    • Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 1981, 17:368-376.
    • (1981) Journal of Molecular Evolution , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 36
    • 0026682501 scopus 로고
    • Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates
    • Felsenstein J. Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates. Genetics Research 1992, 59:139-147.
    • (1992) Genetics Research , vol.59 , pp. 139-147
    • Felsenstein, J.1
  • 37
    • 26444600839 scopus 로고    scopus 로고
    • Tree measures and the number of segregating sites in time-structured population samples
    • Forsberg R, Drummond AJ, Hein J. Tree measures and the number of segregating sites in time-structured population samples. BMC Genetics 2005, 6:35.
    • (2005) BMC Genetics , vol.6 , pp. 35
    • Forsberg, R.1    Drummond, A.J.2    Hein, J.3
  • 38
    • 0035065394 scopus 로고    scopus 로고
    • Estimating mutation rate and generation time from longitudinal samples of DNA sequences
    • Fu YX. Estimating mutation rate and generation time from longitudinal samples of DNA sequences. Molecular Biology and Evolution 2001, 18:620-626.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 620-626
    • Fu, Y.X.1
  • 39
    • 77952303302 scopus 로고    scopus 로고
    • Inferring genealogical processes from patterns of bronze-age and modern DNA variation in Sardinia
    • Ghirotto S, Mona S, Benazzo A. Inferring genealogical processes from patterns of bronze-age and modern DNA variation in Sardinia. Molecular Biology and Evolution 2010, 27:875-886.
    • (2010) Molecular Biology and Evolution , vol.27 , pp. 875-886
    • Ghirotto, S.1    Mona, S.2    Benazzo, A.3
  • 40
    • 68949198875 scopus 로고    scopus 로고
    • Genealogical discontinuities among Etruscan, Medieval and contemporary Tuscans
    • Guamaraes S, Ghirotto S, Benazzo A. Genealogical discontinuities among Etruscan, Medieval and contemporary Tuscans. Molecular Biology and Evolution 2009, 26:2157-2166.
    • (2009) Molecular Biology and Evolution , vol.26 , pp. 2157-2166
    • Guamaraes, S.1    Ghirotto, S.2    Benazzo, A.3
  • 41
    • 33745167649 scopus 로고    scopus 로고
    • Analysis of museum specimens suggests extreme genetic drift in the adonis blue butterfly (Polyommatus bellargus)
    • Harper GL, Maclean N, Goulson D. Analysis of museum specimens suggests extreme genetic drift in the adonis blue butterfly (Polyommatus bellargus). Biological Journal of the Linnean Society 2006, 88:447-452.
    • (2006) Biological Journal of the Linnean Society , vol.88 , pp. 447-452
    • Harper, G.L.1    Maclean, N.2    Goulson, D.3
  • 42
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 1985, 22:160-174.
    • (1985) Journal of Molecular Evolution , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 43
    • 77249086587 scopus 로고    scopus 로고
    • Bayesian inference of species trees from multilocus data
    • Heled J, Drummond AJ. Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution 2009, 27:570-580.
    • (2009) Molecular Biology and Evolution , vol.27 , pp. 570-580
    • Heled, J.1    Drummond, A.J.2
  • 44
    • 31444442779 scopus 로고    scopus 로고
    • Molecular clocks: when times are a-changin'
    • Ho SYW, Larson G. Molecular clocks: when times are a-changin'. Trends in Genetics 2006, 22:79-83.
    • (2006) Trends in Genetics , vol.22 , pp. 79-83
    • Ho, S.Y.W.1    Larson, G.2
  • 45
    • 20444427160 scopus 로고    scopus 로고
    • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
    • Ho SYW, Phillips MJ, Cooper A, Drummond AJ. Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Biology and Evolution 2005, 22:1561-1568.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 1561-1568
    • Ho, S.Y.W.1    Phillips, M.J.2    Cooper, A.3    Drummond, A.J.4
  • 46
    • 38449100326 scopus 로고    scopus 로고
    • Elevated substitution rates estimated from ancient DNA sequences
    • Ho SYW, Kolokotronis S-O, Allaby RG. Elevated substitution rates estimated from ancient DNA sequences. Biology Letters 2007, 3:702-705.
    • (2007) Biology Letters , vol.3 , pp. 702-705
    • Ho, S.Y.W.1    Kolokotronis, S.-O.2    Allaby, R.G.3
  • 47
    • 45449120082 scopus 로고    scopus 로고
    • The effect of inappropriate calibration: three case studies in molecular ecology
    • Ho SYW, Saarma U, Barnett R, Haile J, Shapiro B. The effect of inappropriate calibration: three case studies in molecular ecology. PLoS ONE 2008, 3:e1615.
    • (2008) PLoS ONE , vol.3
    • Ho, S.Y.W.1    Saarma, U.2    Barnett, R.3    Haile, J.4    Shapiro, B.5
  • 48
    • 0348226535 scopus 로고    scopus 로고
    • Evidence for reproductive isolation between cave bear populations
    • Hofreiter M, Rabeder G, Jaenicke-Despres V. Evidence for reproductive isolation between cave bear populations. Current Biology 2004, 14:40-43.
    • (2004) Current Biology , vol.14 , pp. 40-43
    • Hofreiter, M.1    Rabeder, G.2    Jaenicke-Despres, V.3
  • 49
    • 33846953911 scopus 로고    scopus 로고
    • Sudden replacement of cave bear mitochondrial DNA in the late Pleistocene
    • Hofreiter M, Muenzel S, Conard NJ. Sudden replacement of cave bear mitochondrial DNA in the late Pleistocene. Current Biology 2007, 17:R122-R123.
    • (2007) Current Biology , vol.17
    • Hofreiter, M.1    Muenzel, S.2    Conard, N.J.3
  • 50
    • 70350700909 scopus 로고    scopus 로고
    • COMPASS: a program for generating serial samples under an infinite sites model
    • Jakobsson M. COMPASS: a program for generating serial samples under an infinite sites model. Bioinformatics 2009, 25:2845-2847.
    • (2009) Bioinformatics , vol.25 , pp. 2845-2847
    • Jakobsson, M.1
  • 52
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 1980, 16:111-120.
    • (1980) Journal of Molecular Evolution , vol.16 , pp. 111-120
    • Kimura, M.1
  • 54
    • 35548955882 scopus 로고    scopus 로고
    • The derived FOXP2 variant of modern humans was shared with neandertals
    • Krause J, Lalueza-Fox C, Orlando L. The derived FOXP2 variant of modern humans was shared with neandertals. Current Biology 2007, 17:1908-1912.
    • (2007) Current Biology , vol.17 , pp. 1908-1912
    • Krause, J.1    Lalueza-Fox, C.2    Orlando, L.3
  • 55
    • 58349112353 scopus 로고    scopus 로고
    • Coalescent genealogy samplers: windows into population history
    • Kuhner MK. Coalescent genealogy samplers: windows into population history. Trends in Ecology & Evolution 2009, 24:86-93.
    • (2009) Trends in Ecology & Evolution , vol.24 , pp. 86-93
    • Kuhner, M.K.1
  • 56
    • 0029027992 scopus 로고
    • Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling
    • Kuhner MK, Yamato J, Felsenstein J. Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. Genetics 1995, 140:1421-1430.
    • (1995) Genetics , vol.140 , pp. 1421-1430
    • Kuhner, M.K.1    Yamato, J.2    Felsenstein, J.3
  • 57
    • 58649087364 scopus 로고    scopus 로고
    • Genetic characterization of the ABO blood group in Neandertals
    • doi:10.1186/1471-2148-8-342
    • Lalueza-Fox C, Gigli E, de la Rasilla M. Genetic characterization of the ABO blood group in Neandertals. BMC Evolutionary Biology 2008, 8. http://dx.doi.org/10.1186/1471-2148-8-342, doi:10.1186/1471-2148-8-342
    • (2008) BMC Evolutionary Biology , vol.8
    • Lalueza-Fox, C.1    Gigli, E.2    de la Rasilla, M.3
  • 58
    • 70349783965 scopus 로고    scopus 로고
    • Bitter taste perception in Neanderthals through the analysis of the TAS2R38 gene
    • Lalueza-Fox C, Gigli E, de la Rasilla M, Fortea J, Rosas A. Bitter taste perception in Neanderthals through the analysis of the TAS2R38 gene. Biology Letters 2009, 5:809-811.
    • (2009) Biology Letters , vol.5 , pp. 809-811
    • Lalueza-Fox, C.1    Gigli, E.2    de la Rasilla, M.3    Fortea, J.4    Rosas, A.5
  • 59
    • 0037155593 scopus 로고    scopus 로고
    • Rates of evolution in ancient DNA from Adelie penguins
    • Lambert DM, Ritchie PA, Millar CD. Rates of evolution in ancient DNA from Adelie penguins. Science 2002, 295:2270-2273.
    • (2002) Science , vol.295 , pp. 2270-2273
    • Lambert, D.M.1    Ritchie, P.A.2    Millar, C.D.3
  • 62
    • 34250862294 scopus 로고    scopus 로고
    • Megafaunal extinctions and the disappearance of a specialized wolf ecomorph
    • Leonard JA, Vila C, Fox-Dobbs K. Megafaunal extinctions and the disappearance of a specialized wolf ecomorph. Current Biology 2007, 17:1146-1150.
    • (2007) Current Biology , vol.17 , pp. 1146-1150
    • Leonard, J.A.1    Vila, C.2    Fox-Dobbs, K.3
  • 63
    • 34548569323 scopus 로고    scopus 로고
    • Test of genetical isochronism for longitudinal samples of DNA sequences
    • Liu X, Fu YX. Test of genetical isochronism for longitudinal samples of DNA sequences. Genetics 2007, 176:327-342.
    • (2007) Genetics , vol.176 , pp. 327-342
    • Liu, X.1    Fu, Y.X.2
  • 64
    • 46449093614 scopus 로고    scopus 로고
    • Summary statistics of neutral mutations in longitudinal DNA samples
    • Liu X, Fu YX. Summary statistics of neutral mutations in longitudinal DNA samples. Theoretical Population Biology 2008, 74:56-67.
    • (2008) Theoretical Population Biology , vol.74 , pp. 56-67
    • Liu, X.1    Fu, Y.X.2
  • 65
    • 70350567737 scopus 로고    scopus 로고
    • Ancient DNA reveals lack of continuity between neolithic hunter-gatherers and contemporary Scandinavians
    • Malmström H, Gilbert MT, Thomas MG. Ancient DNA reveals lack of continuity between neolithic hunter-gatherers and contemporary Scandinavians. Current Biology 2009, 19:1758-1762.
    • (2009) Current Biology , vol.19 , pp. 1758-1762
    • Malmström, H.1    Gilbert, M.T.2    Thomas, M.G.3
  • 66
    • 33846520723 scopus 로고    scopus 로고
    • Population fragmentation leads to spatial and temporal genetic structure in the endangered Spanish imperial eagle
    • Martinez-Cruz B, Godoy JA, Negro JJ. Population fragmentation leads to spatial and temporal genetic structure in the endangered Spanish imperial eagle. Molecular Ecology 2007, 16:477-486.
    • (2007) Molecular Ecology , vol.16 , pp. 477-486
    • Martinez-Cruz, B.1    Godoy, J.A.2    Negro, J.J.3
  • 67
    • 45849118250 scopus 로고    scopus 로고
    • Bayesian inference of errors in ancient DNA caused by postmortem degradation
    • Mateiu LM, Rannala BH. Bayesian inference of errors in ancient DNA caused by postmortem degradation. Molecular Biology and Evolution 2008, 25:1503-1511.
    • (2008) Molecular Biology and Evolution , vol.25 , pp. 1503-1511
    • Mateiu, L.M.1    Rannala, B.H.2
  • 69
    • 45849122039 scopus 로고    scopus 로고
    • Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
    • Minin VN, Bloomquist EW, Suchard MA. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Molecular Biology and Evolution 2008, 25:1459-1471.
    • (2008) Molecular Biology and Evolution , vol.25 , pp. 1459-1471
    • Minin, V.N.1    Bloomquist, E.W.2    Suchard, M.A.3
  • 70
    • 70350045010 scopus 로고    scopus 로고
    • Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods
    • Navascués M, Emerson BC. Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods. Molecular Ecology 2009, 18:4390-4397.
    • (2009) Molecular Ecology , vol.18 , pp. 4390-4397
    • Navascués, M.1    Emerson, B.C.2
  • 72
    • 29444452921 scopus 로고    scopus 로고
    • Molecular signatures of natural selection
    • Nielson R. Molecular signatures of natural selection. Annual Review of Genetics 2005, 39:197-218.
    • (2005) Annual Review of Genetics , vol.39 , pp. 197-218
    • Nielson, R.1
  • 74
    • 45749086538 scopus 로고    scopus 로고
    • Rapid sequence change and geographical spread of human parvovirus B19: comparison of B19 virus evolution in acute and persistent infections
    • Norja P, Eis-Hubinger AM, Soderlund-Venermo M, Hedman K, Simmonds P. Rapid sequence change and geographical spread of human parvovirus B19: comparison of B19 virus evolution in acute and persistent infections. Journal of Virology 2008, 82:6427-6433.
    • (2008) Journal of Virology , vol.82 , pp. 6427-6433
    • Norja, P.1    Eis-Hubinger, A.M.2    Soderlund-Venermo, M.3    Hedman, K.4    Simmonds, P.5
  • 75
    • 22444436365 scopus 로고    scopus 로고
    • Evolutionary biology - relativity for molecular clocks
    • Penny D. Evolutionary biology - relativity for molecular clocks. Nature 2005, 436:183-184.
    • (2005) Nature , vol.436 , pp. 183-184
    • Penny, D.1
  • 77
    • 0036773016 scopus 로고    scopus 로고
    • GENIE: estimating demographic history from molecular phylogenies
    • Pybus OG, Rambaut A. GENIE: estimating demographic history from molecular phylogenies. Bioinformatics 2002, 18:1404-1405.
    • (2002) Bioinformatics , vol.18 , pp. 1404-1405
    • Pybus, O.G.1    Rambaut, A.2
  • 78
    • 0033911330 scopus 로고    scopus 로고
    • An integrated framework for the inference of viral population history from reconstructed genealogies
    • Pybus OG, Rambaut A, Harvey PH. An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 2000, 155:1429-1437.
    • (2000) Genetics , vol.155 , pp. 1429-1437
    • Pybus, O.G.1    Rambaut, A.2    Harvey, P.H.3
  • 79
    • 62849103887 scopus 로고    scopus 로고
    • Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies
    • Ramakrishnan U, Hadly EA. Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Molecular Ecology 2009, 18:1310-1330.
    • (2009) Molecular Ecology , vol.18 , pp. 1310-1330
    • Ramakrishnan, U.1    Hadly, E.A.2
  • 80
    • 26944492704 scopus 로고    scopus 로고
    • Detecting past population bottlenecks using temporal genetic data
    • Ramakrishnan U, Hadly EA, Mountain JL. Detecting past population bottlenecks using temporal genetic data. Molecular Ecology 2005, 14:2915-2922.
    • (2005) Molecular Ecology , vol.14 , pp. 2915-2922
    • Ramakrishnan, U.1    Hadly, E.A.2    Mountain, J.L.3
  • 81
    • 58449113893 scopus 로고    scopus 로고
    • Accommodating the effect of ancient DNA damage on inferences of demographic histories
    • Rambaut A, Ho SYW, Drummond A, Shapiro B. Accommodating the effect of ancient DNA damage on inferences of demographic histories. Molecular Biology and Evolution 2009, 26:245-248.
    • (2009) Molecular Biology and Evolution , vol.26 , pp. 245-248
    • Rambaut, A.1    Ho, S.Y.W.2    Drummond, A.3    Shapiro, B.4
  • 82
    • 67649819681 scopus 로고    scopus 로고
    • Model criticism based on likelihood-free inference, with an application to protein network evolution
    • Ratmann O, Andrieu C, Wiuf C, Richardson S. Model criticism based on likelihood-free inference, with an application to protein network evolution. Proceedings of the National Academy of Sciences 2009, 106:10576-10581.
    • (2009) Proceedings of the National Academy of Sciences , vol.106 , pp. 10576-10581
    • Ratmann, O.1    Andrieu, C.2    Wiuf, C.3    Richardson, S.4
  • 83
    • 0002667169 scopus 로고    scopus 로고
    • Coalescent approaches to HIV population genetics
    • Crandall K. ed, Johns Hopkins Univ. Press, Baltimore
    • Rodrigo AG, Felsenstein J. Coalescent approaches to HIV population genetics. The Evolution of HIV 1999, 233-274. Crandall K, ed, Johns Hopkins Univ. Press, Baltimore, pp
    • (1999) The Evolution of HIV , pp. 233-274
    • Rodrigo, A.G.1    Felsenstein, J.2
  • 85
    • 9444220256 scopus 로고    scopus 로고
    • Rise and fall of the beringian steppe bison
    • Shapiro B, Drummond AJ, Rambaut A. Rise and fall of the beringian steppe bison. Science 2004, 306:1561-1565.
    • (2004) Science , vol.306 , pp. 1561-1565
    • Shapiro, B.1    Drummond, A.J.2    Rambaut, A.3
  • 87
    • 66249128632 scopus 로고    scopus 로고
    • How robust are "Isolation with Migration" analyses to violations of the IM model? A simulation study
    • Strasburg JL, Rieseberg LH. How robust are "Isolation with Migration" analyses to violations of the IM model? A simulation study. Molecular Biology and Evolution 2009, 26:1341-1355.
    • (2009) Molecular Biology and Evolution , vol.26 , pp. 1341-1355
    • Strasburg, J.L.1    Rieseberg, L.H.2
  • 88
    • 0035211479 scopus 로고    scopus 로고
    • Exploring the demographic history of DNA sequences using the generalized skyline plot
    • Strimmer K, Pybus OG. Exploring the demographic history of DNA sequences using the generalized skyline plot. Molecular Biology and Evolution 2001, 18:2298-2305.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 2298-2305
    • Strimmer, K.1    Pybus, O.G.2
  • 89
    • 34547095476 scopus 로고    scopus 로고
    • Tracing genetic change over time using nuclear SNPs in ancient and modern cattle
    • Svensson EM, Anderung C, Baubliene J. Tracing genetic change over time using nuclear SNPs in ancient and modern cattle. Animal Genetics 2007, 38:378-383.
    • (2007) Animal Genetics , vol.38 , pp. 378-383
    • Svensson, E.M.1    Anderung, C.2    Baubliene, J.3
  • 90
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima F. Evolutionary relationship of DNA sequences in finite populations. Genetics 1983, 105:437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 91
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 1993, 10:512-526.
    • (1993) Molecular Biology and Evolution , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 92
    • 37249061678 scopus 로고    scopus 로고
    • Staying out in the cold: glacial refugia and mitochondrial DNA phylogeography in ancient European brown bears
    • Valdiosera CE, Garcia N, Anderung C. Staying out in the cold: glacial refugia and mitochondrial DNA phylogeography in ancient European brown bears. Molecular Ecology 2007, 16:5140-5148.
    • (2007) Molecular Ecology , vol.16 , pp. 5140-5148
    • Valdiosera, C.E.1    Garcia, N.2    Anderung, C.3
  • 96
    • 34447337482 scopus 로고    scopus 로고
    • Ancient biomolecules from deep ice cores reveal a forested Southern Greenland
    • Willerslev E, Cappellini E, Boomsma W. Ancient biomolecules from deep ice cores reveal a forested Southern Greenland. Science 2007, 317:111-114.
    • (2007) Science , vol.317 , pp. 111-114
    • Willerslev, E.1    Cappellini, E.2    Boomsma, W.3
  • 97
    • 0001771498 scopus 로고
    • Evolution in Mendelian populations
    • Wright S. Evolution in Mendelian populations. Genetics 1931, 16:97-159.
    • (1931) Genetics , vol.16 , pp. 97-159
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.