-
1
-
-
80052013378
-
Learning about human population history from ancient and modern genomes
-
Stoneking M, Krause J (2011) Learning about human population history from ancient and modern genomes. Nat Rev Genet 12(9):603-614.
-
(2011)
Nat Rev Genet
, vol.12
, Issue.9
, pp. 603-614
-
-
Stoneking, M.1
Krause, J.2
-
2
-
-
33751077282
-
Analysis of one million base pairs of Neanderthal DNA
-
Green RE, et al. (2006) Analysis of one million base pairs of Neanderthal DNA. Nature 444(7117):330-336.
-
(2006)
Nature
, vol.444
, Issue.7117
, pp. 330-336
-
-
Green, R.E.1
-
3
-
-
33751073995
-
Sequencing and analysis of Neanderthal genomic DNA
-
Noonan JP, et al. (2006) Sequencing and analysis of Neanderthal genomic DNA. Science 314(5802):1113-1118.
-
(2006)
Science
, vol.314
, Issue.5802
, pp. 1113-1118
-
-
Noonan, J.P.1
-
4
-
-
76749141381
-
Ancient human genome sequence of an extinct Palaeo-Eskimo
-
Rasmussen M, et al. (2010) Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463(7282):757-762.
-
(2010)
Nature
, vol.463
, Issue.7282
, pp. 757-762
-
-
Rasmussen, M.1
-
5
-
-
84867331947
-
A high-coverage genome sequence from an archaic Denisovan individual
-
Meyer M, et al. (2012) A high-coverage genome sequence from an archaic Denisovan individual. Science 338(6104):222-226.
-
(2012)
Science
, vol.338
, Issue.6104
, pp. 222-226
-
-
Meyer, M.1
-
6
-
-
84873426880
-
DNA analysis of an early modern human from Tianyuan Cave, China
-
Fu Q, et al. (2013) DNA analysis of an early modern human from Tianyuan Cave, China. Proc Natl Acad Sci USA 110(6):2223-2227.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.6
, pp. 2223-2227
-
-
Fu, Q.1
-
7
-
-
84863230079
-
New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing
-
Keller A, et al. (2012) New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing. Nat Commun 3:698.
-
(2012)
Nat Commun
, vol.3
, pp. 698
-
-
Keller, A.1
-
8
-
-
84860132302
-
Origins and genetic legacy of Neolithic farmers and huntergatherers in Europe
-
Skoglund P, et al. (2012) Origins and genetic legacy of Neolithic farmers and huntergatherers in Europe. Science 336(6080):466-469.
-
(2012)
Science
, vol.336
, Issue.6080
, pp. 466-469
-
-
Skoglund, P.1
-
9
-
-
84865251657
-
Genomic affinities of two 7,000-year-old Iberian hunter-gatherers
-
Sánchez-Quinto F, et al. (2012) Genomic affinities of two 7,000-year-old Iberian hunter-gatherers. Curr Biol 22(16):1494-1499.
-
(2012)
Curr Biol
, vol.22
, Issue.16
, pp. 1494-1499
-
-
Sánchez-Quinto, F.1
-
10
-
-
75749095504
-
A complete mtDNA genome of an early modern human from Kostenki, Russia
-
Krause J, et al. (2010) A complete mtDNA genome of an early modern human from Kostenki, Russia. Curr Biol 20(3):231-236.
-
(2010)
Curr Biol
, vol.20
, Issue.3
, pp. 231-236
-
-
Krause, J.1
-
11
-
-
0001215415
-
Authenticating DNA extracted from ancient skeletal remains
-
Richards MB, Sykes BC, Hedges RE (1995) Authenticating DNA extracted from ancient skeletal remains. J Archaeol Sci 22(2):291-299.
-
(1995)
J Archaeol Sci
, vol.22
, Issue.2
, pp. 291-299
-
-
Richards, M.B.1
Sykes, B.C.2
Hedges, R.E.3
-
12
-
-
0029834127
-
The retrieval of ancient human DNA sequences
-
Handt O, Krings M, Ward RH, Pääbo S (1996) The retrieval of ancient human DNA sequences. Am J Hum Genet 59(2):368-376.
-
(1996)
Am J Hum Genet
, vol.59
, Issue.2
, pp. 368-376
-
-
Handt, O.1
Krings, M.2
Ward, R.H.3
Pääbo, S.4
-
13
-
-
0033988047
-
Ancient DNA analysis of human populations
-
Kolman CJ, Tuross N (2000) Ancient DNA analysis of human populations. Am J Phys Anthropol 111(1):5-23.
-
(2000)
Am J Phys Anthropol
, vol.111
, Issue.1
, pp. 5-23
-
-
Kolman, C.J.1
Tuross, N.2
-
14
-
-
33748144626
-
Tracking down human contamination in ancient human teeth
-
Sampietro ML, et al. (2006) Tracking down human contamination in ancient human teeth. Mol Biol Evol 23(9):1801-1807.
-
(2006)
Mol Biol Evol
, vol.23
, Issue.9
, pp. 1801-1807
-
-
Sampietro, M.L.1
-
15
-
-
35948953261
-
Inconsistencies in Neanderthal genomic DNA sequences
-
Wall JD, Kim SK (2007) Inconsistencies in Neanderthal genomic DNA sequences. PLoS Genet 3(10):1862-1866.
-
(2007)
PLoS Genet
, vol.3
, Issue.10
, pp. 1862-1866
-
-
Wall, J.D.1
Kim, S.K.2
-
16
-
-
69849108590
-
The Neandertal genome and ancient DNA authenticity
-
Green RE, et al. (2009) The Neandertal genome and ancient DNA authenticity. EMBO J 28(17):2494-2502.
-
(2009)
EMBO J
, vol.28
, Issue.17
, pp. 2494-2502
-
-
Green, R.E.1
-
17
-
-
0000832946
-
Ancient DNA: Extraction, characterization, molecular cloning, and enzymatic amplification
-
Pääbo S (1989) Ancient DNA: Extraction, characterization, molecular cloning, and enzymatic amplification. Proc Natl Acad Sci USA 86(6):1939-1943.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, Issue.6
, pp. 1939-1943
-
-
Pääbo, S.1
-
18
-
-
0035581087
-
DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
-
Hofreiter M, Jaenicke V, Serre D, von Haeseler A, Pääbo S (2001) DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res 29(23):4793-4799.
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.23
, pp. 4793-4799
-
-
Hofreiter, M.1
Jaenicke, V.2
Serre, D.3
Von Haeseler, A.4
Pääbo, S.5
-
19
-
-
0035143521
-
Statistical evidence for miscoding lesions in ancient DNA templates
-
Hansen AJ, Willerslev E, Wiuf C, Mourier T, Arctander P (2001) Statistical evidence for miscoding lesions in ancient DNA templates. Mol Biol Evol 18(2):262-265.
-
(2001)
Mol Biol Evol
, vol.18
, Issue.2
, pp. 262-265
-
-
Hansen, A.J.1
Willerslev, E.2
Wiuf, C.3
Mourier, T.4
Arctander, P.5
-
20
-
-
34848866065
-
Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions
-
Brotherton P, et al. (2007) Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions. Nucleic Acids Res 35(17):5717-5728.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.17
, pp. 5717-5728
-
-
Brotherton, P.1
-
21
-
-
34848827224
-
Patterns of damage in genomic DNA sequences from a Neandertal
-
Briggs AW, et al. (2007) Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci USA 104(37):14616-14621.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.37
, pp. 14616-14621
-
-
Briggs, A.W.1
-
22
-
-
80052307945
-
Fragmentation of contaminant and endogenous DNA in ancient samples determined by shotgun sequencing; Prospects for human palaeogenomics
-
García-Garcerà M, et al. (2011) Fragmentation of contaminant and endogenous DNA in ancient samples determined by shotgun sequencing; prospects for human palaeogenomics. PLoS One 6(8):e24161.
-
(2011)
PLoS One
, vol.6
, Issue.8
-
-
García-Garcerà, M.1
-
23
-
-
84859112401
-
Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA
-
Sawyer S, Krause J, Guschanski K, Savolainen V, Pääbo S (2012) Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS One 7(3):e34131.
-
(2012)
PLoS One
, vol.7
, Issue.3
-
-
Sawyer, S.1
Krause, J.2
Guschanski, K.3
Savolainen, V.4
Pääbo, S.5
-
24
-
-
77952136530
-
A draft sequence of the Neandertal genome
-
Green RE, et al. (2010) A draft sequence of the Neandertal genome. Science 328(5979):710-722.
-
(2010)
Science
, vol.328
, Issue.5979
, pp. 710-722
-
-
Green, R.E.1
-
25
-
-
78650850475
-
Genetic history of an archaic hominin group from Denisova Cave in Siberia
-
Reich D, et al. (2010) Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature 468(7327):1053-1060.
-
(2010)
Nature
, vol.468
, Issue.7327
, pp. 1053-1060
-
-
Reich, D.1
-
26
-
-
34547656210
-
A statistical approach to identify ancient template DNA
-
Helgason A, et al. (2007) A statistical approach to identify ancient template DNA. J Mol Evol 65(1):92-102.
-
(2007)
J Mol Evol
, vol.65
, Issue.1
, pp. 92-102
-
-
Helgason, A.1
-
27
-
-
80053581951
-
An Aboriginal Australian genome reveals separate human dispersals into Asia
-
Rasmussen M, et al. (2011) An Aboriginal Australian genome reveals separate human dispersals into Asia. Science 334(6052):94-98.
-
(2011)
Science
, vol.334
, Issue.6052
, pp. 94-98
-
-
Rasmussen, M.1
-
28
-
-
34848867598
-
Whole-genome shotgun sequencing of mitochondria from ancient hair shafts
-
Gilbert MTP, et al. (2007) Whole-genome shotgun sequencing of mitochondria from ancient hair shafts. Science 317(5846):1927-1930.
-
(2007)
Science
, vol.317
, Issue.5846
, pp. 1927-1930
-
-
Gilbert, M.T.P.1
-
29
-
-
67650831473
-
Targeted retrieval and analysis of five Neandertal mtDNA genomes
-
Briggs AW, et al. (2009) Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science 325(5938):318-321.
-
(2009)
Science
, vol.325
, Issue.5938
, pp. 318-321
-
-
Briggs, A.W.1
-
30
-
-
35348938439
-
Neanderthals in central Asia and Siberia
-
Krause J, et al. (2007) Neanderthals in central Asia and Siberia. Nature 449(7164): 902-904.
-
(2007)
Nature
, vol.449
, Issue.7164
, pp. 902-904
-
-
Krause, J.1
-
31
-
-
48649096196
-
A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing
-
Green RE, et al. (2008) A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell 134(3):416-426.
-
(2008)
Cell
, vol.134
, Issue.3
, pp. 416-426
-
-
Green, R.E.1
-
32
-
-
84864405758
-
Partial genetic turnover in neandertals: Continuity in the East and population replacement in the West
-
Dalén L, et al. (2012) Partial genetic turnover in neandertals: Continuity in the East and population replacement in the West. Mol Biol Evol 29(8):1893-1897.
-
(2012)
Mol Biol Evol
, vol.29
, Issue.8
, pp. 1893-1897
-
-
Dalén, L.1
-
33
-
-
24744437359
-
Extensive human DNA contamination in extracts from ancient dog bones and teeth
-
Malmström H, Stora J, Dalén L, Holmlund G, Götherström A (2005) Extensive human DNA contamination in extracts from ancient dog bones and teeth. Mol Biol Evol 22(10):2040-2047.
-
(2005)
Mol Biol Evol
, vol.22
, Issue.10
, pp. 2040-2047
-
-
Malmström, H.1
Stora, J.2
Dalén, L.3
Holmlund, G.4
Götherström, A.5
-
34
-
-
0342471758
-
Molecular analysis of Neanderthal DNA from the northern Caucasus
-
Ovchinnikov IV, et al. (2000) Molecular analysis of Neanderthal DNA from the northern Caucasus. Nature 404(6777):490-493.
-
(2000)
Nature
, vol.404
, Issue.6777
, pp. 490-493
-
-
Ovchinnikov, I.V.1
-
35
-
-
34248549305
-
Comparison and optimization of ancient DNA extraction
-
Rohland N, Hofreiter M (2007) Comparison and optimization of ancient DNA extraction. Biotechniques 42(3):343-352.
-
(2007)
Biotechniques
, vol.42
, Issue.3
, pp. 343-352
-
-
Rohland, N.1
Hofreiter, M.2
-
36
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437(7057):376-380.
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 376-380
-
-
Margulies, M.1
-
37
-
-
77956285690
-
Illumina sequencing library preparation for highly multiplexed target capture and sequencing
-
Meyer M, Kircher M (2010) Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc 2010(6):t5448.
-
(2010)
Cold Spring Harb Protoc
, vol.2010
, Issue.6
-
-
Meyer, M.1
Kircher, M.2
-
38
-
-
77950820147
-
The complete mitochondrial DNA genome of an unknown hominin from southern Siberia
-
Krause J, et al. (2010) The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature 464(7290):894-897.
-
(2010)
Nature
, vol.464
, Issue.7290
, pp. 894-897
-
-
Krause, J.1
-
39
-
-
70350023532
-
Improved base calling for the Illumina Genome Analyzer using machine learning strategies
-
Kircher M, Stenzel U, Kelso J (2009) Improved base calling for the Illumina Genome Analyzer using machine learning strategies. Genome Biol 10(8):R83.
-
(2009)
Genome Biol
, vol.10
, Issue.8
-
-
Kircher, M.1
Stenzel, U.2
Kelso, J.3
-
41
-
-
0034619822
-
Mitochondrial genome variation and the origin of modern humans
-
Ingman M, Kaessmann H, Pääbo S, Gyllensten U (2000) Mitochondrial genome variation and the origin of modern humans. Nature 408(6813):708-713.
-
(2000)
Nature
, vol.408
, Issue.6813
, pp. 708-713
-
-
Ingman, M.1
Kaessmann, H.2
Pääbo, S.3
Gyllensten, U.4
-
42
-
-
84860109324
-
MrBayes 3. 2: Efficient Bayesian phylogenetic inference and model choice across a large model space
-
Ronquist F, et al. (2012) MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61(3):539-542.
-
(2012)
Syst Biol
, vol.61
, Issue.3
, pp. 539-542
-
-
Ronquist, F.1
|