메뉴 건너뛰기




Volumn 4, Issue , 2006, Pages 119-147

Pharmacophore modeling: 1 - methods

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84906460724     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter
Times cited : (14)

References (192)
  • 8
    • 0001672496 scopus 로고
    • Enantioselective Binding of (+) and (-) 2-Amino-6,7-Dihydroxy-1, 2,3,4-Tetrahydro-naphthalenes and Related Agonists to Dopamine Receptors
    • In, Usdin, E., Ed.; Pergamon: New York
    • McDermed, J. D.; Freeman, H. S.; Ferris, R. M. Enantioselective Binding of (+) and (-) 2-Amino-6,7-Dihydroxy-1, 2,3,4-Tetrahydro-naphthalenes and Related Agonists to Dopamine Receptors. In Catecholamines: Basic and Clinical Frontiers; Usdin, E., Ed.; Pergamon: New York, 1979, p 568.
    • (1979) Catecholamines: Basic and Clinical Frontiers , pp. 568
    • McDermed, J.D.1    Freeman, H.S.2    Ferris, R.M.3
  • 12
    • 0001383234 scopus 로고    scopus 로고
    • HypoGen: An Automated System for Generating 3D Predictive Pharmacophore Models
    • In, Güner, O. F, Ed.; International University Line: La Jolla, CA
    • Li, H.; Sutter, J.; Hoffman, R. HypoGen: An Automated System for Generating 3D Predictive Pharmacophore Models. In Pharmacophore Perception, Development, and Use in Drug Design; Güner, O. F, Ed.; International University Line: La Jolla, CA, 1999; pp 171-189.
    • (1999) Pharmacophore Perception, Development, and Use in Drug Design , pp. 171-189
    • Li, H.1    Sutter, J.2    Hoffman, R.3
  • 13
    • 0030771347 scopus 로고    scopus 로고
    • Today
    • Kubinyi, H. DrugDisc. Today 1997, 2, 457-467.
    • (1997) DrugDisc , vol.2 , pp. 457-467
    • Kubinyi, H.1
  • 25
    • 0344305195 scopus 로고    scopus 로고
    • Crystallographic Databases Their Use for Studying Intermolecular Interactions
    • In, Martin, Y C., Willett, P, Eds.; American Chemical Society: Washington DC
    • Pitchford, N.; Taylor, R. Crystallographic Databases and Their Use for Studying Intermolecular Interactions. In Designing Bioactive Molecules: Three-Dimensional Techniques; Martin, Y C., Willett, P, Eds.; American Chemical Society: Washington DC, 1997, pp 19-46.
    • (1997) Designing Bioactive Molecules: Three-Dimensional Techniques , pp. 19-46
    • Pitchford, N.1    Taylor, R.2
  • 28
    • 84906446734 scopus 로고
    • Tripos Inc: St Louis, MO
    • Allinger, M. L. MMP2; Tripos Inc: St Louis, MO, 1995.
    • (1995) MMP2
    • Allinger, M.L.1
  • 30
    • 0004301669 scopus 로고
    • Sybyl Molecular Modeling Software
    • TRIPOS, Inc.: St Louis, MO
    • Sybyl Molecular Modeling Software; TRIPOS, Inc.: St. Louis, MO, 1995.
    • (1995)
  • 39
    • 17844388776 scopus 로고    scopus 로고
    • Omega, OpenEye Scientific Software
    • 3600 Cerrillos Rd., Suite 1107: Santa Fe, NM, 87507, USA, accessed May
    • Omega, OpenEye Scientific Software, 3600 Cerrillos Rd., Suite 1107: Santa Fe, NM, 87507, USA. www.eyesopen.com/products/applications/omega.html (accessed May 2006).
    • (2006)
  • 50
    • 84906462614 scopus 로고
    • Network Science, accessed May 2006
    • Davies, K., Upton, R. Network Science 1995, 1. http://www.awod.com (accessed May 2006).
    • (1995) , pp. 1
    • Davies, K.1    Upton, R.2
  • 58
    • 0000460468 scopus 로고
    • The Conformation Parameter in Drug Design: The Active Analog Approach
    • In, Olson, E. C., Christoffersen, R. E., Eds.; American Chemical Society: Washington
    • Marshall, G. R.; Barry, C. D.; Bosshard, H. E.; Dammkoehler, R. A.; Dunn, D. A. The Conformation Parameter in Drug Design: The Active Analog Approach. In Computer-Assisted Drug Design; Olson, E. C., Christoffersen, R. E., Eds.; American Chemical Society: Washington, 1979, pp 205-226.
    • (1979) Computer-Assisted Drug Design , pp. 205-226
    • Marshall, G.R.1    Barry, C.D.2    Bosshard, H.E.3    Dammkoehler, R.A.4    Dunn, D.A.5
  • 60
    • 0007864877 scopus 로고    scopus 로고
    • Pharmacophore Definition Using the Active Analog Approach
    • In, Guner, O., Ed.; International University Line: La Jolla, CA
    • Beusen, D. D.; Marshall, G. R. Pharmacophore Definition Using the Active Analog Approach. In Pharmacophore Perception, Development, and Use in Drug Design; Guner, O., Ed.; International University Line: La Jolla, CA, 1999, pp 21-45.
    • (1999) Pharmacophore Perception, Development, and Use in Drug Design , pp. 21-45
    • Beusen, D.D.1    Marshall, G.R.2
  • 76
    • 0001204208 scopus 로고
    • Computer-Assisted Pharmacophore Identification
    • In, Kubinyi, H., Ed.; ESCOM: Leiden
    • Golender, V. E.; Vorpagel, E. R. Computer-Assisted Pharmacophore Identification. In 3D QSAR in Drug Design. Theory Methods and ; Kubinyi, H., Ed.; ESCOM: Leiden, 1993, pp 137-149.
    • (1993) 3D QSAR in Drug Design. Theory Methods and , pp. 137-149
    • Golender, V.E.1    Vorpagel, E.R.2
  • 77
    • 84906425553 scopus 로고    scopus 로고
    • Apex-3D: Activity Prediction Expert System with 3D QSAR
    • In, Güner, O. F., Ed.; International University Line: La Jolla, CA
    • Vorpagel, E. R.; Golender, V E. Apex-3D: Activity Prediction Expert System with 3D QSAR. In Pharmacophore Perception, Development, and Use in Drug Design; Güner, O. F., Ed.; International University Line: La Jolla, CA, 1999, pp 128-149.
    • (1999) Pharmacophore Perception, Development, and Use in Drug Design , pp. 128-149
    • Vorpagel, E.R.1    Golender, V.E.2
  • 80
    • 0013169898 scopus 로고    scopus 로고
    • GASP: Genetic Algorithm Superimposition Program
    • In, Güner, O. F., Ed.; International University Line: La Jolla, CA
    • Jones, G.; Willett, P; Glen, R. C. GASP: Genetic Algorithm Superimposition Program. In Pharmacophore Perception, Development, and Use in Drug Design; Güner, O. F., Ed.; International University Line: La Jolla, CA, 1999, pp 85-107.
    • (1999) Pharmacophore Perception, Development, and Use in Drug Design , pp. 85-107
    • Jones, G.1    Willett, P.2    Glen, R.C.3
  • 82
    • 84906462612 scopus 로고    scopus 로고
    • Tripos: St. Louis, MO, USA, accessed May
    • Clark, R. D. Galahad; Tripos: St. Louis, MO, USA. www.tripos.com (accessed May 2006).
    • (2006) Galahad
    • Clark, R.D.1
  • 85
  • 95
    • 84906426685 scopus 로고    scopus 로고
    • accessed July
    • http://www.accelrys.com/products/catalyst/(accessed July 2006).
    • (2006)
  • 96
    • 84906479666 scopus 로고    scopus 로고
    • Schrüdinger, 120 W 45th St.: New York, NY 10036-4041
    • Phase, Schrüdinger, 120 W 45th St.: New York, NY 10036-4041.
    • Phase
  • 118
    • 0012257335 scopus 로고
    • CAVEAT: A Program to Facilitate the Structure-Derived Design of Biologically Active Molecules
    • In, Roberts, S. M., Ley, S. V, Campbell, M. M., Eds.; Roy. Soc. Chem.: Cambridge
    • Bartlett, P A.; Shea, G. T; Telfer, S. J.; Waterman, S. CAVEAT: A Program to Facilitate the Structure-Derived Design of Biologically Active Molecules. In Chemical and Biological Problems in Molecular Recognition; Roberts, S. M., Ley, S. V, Campbell, M. M., Eds.; Roy. Soc. Chem.: Cambridge, 1989, pp 182-196.
    • (1989) Chemical and Biological Problems in Molecular Recognition , pp. 182-196
    • Bartlett, P.A.1    Shea, G.T.2    Telfer, S.J.3    Waterman, S.4
  • 126
    • 84906478023 scopus 로고    scopus 로고
    • Iresearch Library, ChemNavigator: San Diego, CA accessed May
    • Iresearch Library, ChemNavigator: San Diego, CA. http://www.chemnavigator.com (accessed May 2006).
    • (2006)
  • 127
    • 84906426683 scopus 로고    scopus 로고
    • NCI DTP/2D and 3D Structural Information
    • accessed May
    • NCI DTP/2D and 3D Structural Information. gov/docs/3ddatabase/structuralinformation/structuraldata.html (accessed May 2006).
    • (2006)
  • 132
    • 84906478024 scopus 로고    scopus 로고
    • WDI: World Drug Index, Derwent: London
    • WDI: World Drug Index, Derwent: London.
  • 133
    • 84906446731 scopus 로고    scopus 로고
    • ACD: Available Chemicals Directory; Elsevier MDL, San Ramon, CA
    • ACD: Available Chemicals Directory; Elsevier MDL, San Ramon, CA.
  • 138
    • 84906437470 scopus 로고    scopus 로고
    • Concord, a Program for the Rapid Generation of High Quality Approximate, 3.01 ed.; The University of Texas at Austin and Tripos Associates: St. Louis, Missouri
    • Rusinko, A. I.; Skell, J. M.; Balducci, R.; McGarity, C. M.; Pearlman, R. S. Concord, a Program for the Rapid Generation of High Quality Approximate3-Dimensional Molecular Structures, 3.01 ed.; The University of Texas at Austin and Tripos Associates: St. Louis, Missouri.
    • 3-Dimensional Molecular Structures
    • Rusinko, A.I.1    Skell, J.M.2    Balducci, R.3    McGarity, C.M.4    Pearlman, R.S.5
  • 139
    • 84906446732 scopus 로고    scopus 로고
    • ISIS: Elsevier MDL, San Ramon, CA
    • ISIS: Elsevier MDL, San Ramon, CA.
  • 147
    • 84906426684 scopus 로고    scopus 로고
    • Stereoplex and Protoplex, Tripos: St. Louis, MO accessed May
    • Stereoplex and Protoplex, Tripos: St. Louis, MO. www.tripos.com (accessed May 2006).
    • (2006)
  • 153
    • 84906421718 scopus 로고    scopus 로고
    • Tripos, Inc.: St. Louis, MO
    • Confort; Tripos, Inc.: St. Louis, MO.
    • Confort
  • 154
    • 84906463463 scopus 로고    scopus 로고
    • Molecular Networks GmbH: Erlangen, Germany
    • Rotate; Molecular Networks GmbH: Erlangen, Germany.
    • Rotate
  • 159
    • 84906446733 scopus 로고    scopus 로고
    • ROCS, OpenEye Scientific Software: Santa Fe, NM accessed May
    • ROCS, OpenEye Scientific Software: Santa Fe, NM. http://www.eyesopen.com/products/applications/rocs.html (accessed May 2006).
    • (2006)
  • 160
    • 84906446729 scopus 로고    scopus 로고
    • Unity Chemical Information Software, Tripos Associates: St. Louis, MO accessed May
    • Unity Chemical Information Software, Tripos Associates: St. Louis, MO. www.tripos.com (accessed May 2006).
    • (2006)
  • 167
    • 0002212887 scopus 로고    scopus 로고
    • Hiphop: Pharmacophores Based on Multiple Common Feature Alignments
    • In, Güner, O., Ed.; International University Line: La Jolla, CA
    • Clement, O. O.; Mehl, A. T Hiphop: Pharmacophores Based on Multiple Common Feature Alignments. In Pharmacophore Perception, Development, and Use in Drug Design; Güner, O., Ed.; International University Line: La Jolla, CA, 1999, pp 69-84.
    • (1999) Pharmacophore Perception, Development, and Use in Drug Design , pp. 69-84
    • Clement, O.O.1    Mehl, A.T.2
  • 185
    • 84906477196 scopus 로고
    • Unity Chemical Information Software
    • Tripos Associates: St Louis, MO
    • Unity Chemical Information Software, Tripos Associates: St Louis, MO, 1993.
    • (1993)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.