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Volumn 17, Issue 5-6, 1996, Pages 553-586

Merck molecular force field. III. Molecular geometries and vibrational frequencies for MMFF94

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EID: 0011143599     PISSN: 01928651     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1096-987X(199604)17:5/6<553::AID-JCC3>3.0.CO;2-T     Document Type: Article
Times cited : (806)

References (144)
  • 5
    • 0024821263 scopus 로고
    • N. L. Allinger, Y. H. Yuh, and J-H. Lii, J. Am Chem. Soc., 111, 8551-8566 (1989) . See also: N. L. Allinger and L. Yan, J. Am. Chem. Soc., 115, 11918-11925 (1993), and references therein.
    • (1989) J. Am Chem. Soc. , vol.111 , pp. 8551-8566
    • Allinger, N.L.1    Yuh, Y.H.2    Lii, J.-H.3
  • 6
    • 0001045895 scopus 로고
    • and references therein
    • N. L. Allinger, Y. H. Yuh, and J-H. Lii, J. Am Chem. Soc., 111, 8551-8566 (1989) . See also: N. L. Allinger and L. Yan, J. Am. Chem. Soc., 115, 11918-11925 (1993), and references therein.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 11918-11925
    • Allinger, N.L.1    Yan, L.2
  • 15
    • 0001345932 scopus 로고
    • (b) M.-J. Hwang, T. P. Stockfish, and A. T. Hagler, J. Am. Chem. Soc., 116, 2515-2525 (1994). See also: J. R. Maple, U. Dinur, and A. T. Hagler, Proc. Natl. Acad. Sci. USA, 85, 5350-5354 (1988); A. T. Hagler, J. R. Maple, T. S. Thacher, G. B. Fitzgerald, and U. Dinur, In Computer Simulation of Biomolecular Systems, W. F. van Gunsteren and P. K. Weiner, Eds., ESCOM, Leiden, 1989, pp. 149-167; U. Dinur and A. T. Hagler, In Reviews in Computational Chemistry, K. B. Lipkowitz and D. B. Boyd, Eds., VCH Publishers, New York, 1991, Vol. 2, pp. 99-163. See also; J. Palca, Nature, 322, 586 (1986).
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 2515-2525
    • Hwang, M.-J.1    Stockfish, T.P.2    Hagler, A.T.3
  • 16
    • 0000051486 scopus 로고
    • (b) M.-J. Hwang, T. P. Stockfish, and A. T. Hagler, J. Am. Chem. Soc., 116, 2515-2525 (1994). See also: J. R. Maple, U. Dinur, and A. T. Hagler, Proc. Natl. Acad. Sci. USA, 85, 5350-5354 (1988); A. T. Hagler, J. R. Maple, T. S. Thacher, G. B. Fitzgerald, and U. Dinur, In Computer Simulation of Biomolecular Systems, W. F. van Gunsteren and P. K. Weiner, Eds., ESCOM, Leiden, 1989, pp. 149-167; U. Dinur and A. T. Hagler, In Reviews in Computational Chemistry, K. B. Lipkowitz and D. B. Boyd, Eds., VCH Publishers, New York, 1991, Vol. 2, pp. 99-163. See also; J. Palca, Nature, 322, 586 (1986).
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 5350-5354
    • Maple, J.R.1    Dinur, U.2    Hagler, A.T.3
  • 17
    • 0344607093 scopus 로고
    • W. F. van Gunsteren and P. K. Weiner, Eds., ESCOM, Leiden
    • (b) M.-J. Hwang, T. P. Stockfish, and A. T. Hagler, J. Am. Chem. Soc., 116, 2515-2525 (1994). See also: J. R. Maple, U. Dinur, and A. T. Hagler, Proc. Natl. Acad. Sci. USA, 85, 5350-5354 (1988); A. T. Hagler, J. R. Maple, T. S. Thacher, G. B. Fitzgerald, and U. Dinur, In Computer Simulation of Biomolecular Systems, W. F. van Gunsteren and P. K. Weiner, Eds., ESCOM, Leiden, 1989, pp. 149-167; U. Dinur and A. T. Hagler, In Reviews in Computational Chemistry, K. B. Lipkowitz and D. B. Boyd, Eds., VCH Publishers, New York, 1991, Vol. 2, pp. 99-163. See also; J. Palca, Nature, 322, 586 (1986).
    • (1989) Computer Simulation of Biomolecular Systems , pp. 149-167
    • Hagler, A.T.1    Maple, J.R.2    Thacher, T.S.3    Fitzgerald, G.B.4    Dinur, U.5
  • 18
    • 0001772690 scopus 로고
    • K. B. Lipkowitz and D. B. Boyd, Eds., VCH Publishers, New York
    • (b) M.-J. Hwang, T. P. Stockfish, and A. T. Hagler, J. Am. Chem. Soc., 116, 2515-2525 (1994). See also: J. R. Maple, U. Dinur, and A. T. Hagler, Proc. Natl. Acad. Sci. USA, 85, 5350-5354 (1988); A. T. Hagler, J. R. Maple, T. S. Thacher, G. B. Fitzgerald, and U. Dinur, In Computer Simulation of Biomolecular Systems, W. F. van Gunsteren and P. K. Weiner, Eds., ESCOM, Leiden, 1989, pp. 149-167; U. Dinur and A. T. Hagler, In Reviews in Computational Chemistry, K. B. Lipkowitz and D. B. Boyd, Eds., VCH Publishers, New York, 1991, Vol. 2, pp. 99-163. See also; J. Palca, Nature, 322, 586 (1986).
    • (1991) Reviews in Computational Chemistry , vol.2 , pp. 99-163
    • Dinur, U.1    Hagler, A.T.2
  • 19
    • 5244322143 scopus 로고
    • (b) M.-J. Hwang, T. P. Stockfish, and A. T. Hagler, J. Am. Chem. Soc., 116, 2515-2525 (1994). See also: J. R. Maple, U. Dinur, and A. T. Hagler, Proc. Natl. Acad. Sci. USA, 85, 5350-5354 (1988); A. T. Hagler, J. R. Maple, T. S. Thacher, G. B. Fitzgerald, and U. Dinur, In Computer Simulation of Biomolecular Systems, W. F. van Gunsteren and P. K. Weiner, Eds., ESCOM, Leiden, 1989, pp. 149-167; U. Dinur and A. T. Hagler, In Reviews in Computational Chemistry, K. B. Lipkowitz and D. B. Boyd, Eds., VCH Publishers, New York, 1991, Vol. 2, pp. 99-163. See also; J. Palca, Nature, 322, 586 (1986).
    • (1986) Nature , vol.322 , pp. 586
    • Palca, J.1
  • 21
    • 5244383544 scopus 로고    scopus 로고
    • note
    • For example, the CHARMm force field distributed through QUANTA 3.2 and other versions (Molecular Simulations, Inc., San Diego, CA; cf. ref. 7) takes this approach, as do the academic CHARMM force field, AMBER, and CVFF. MM2 and MM3, in contrast, make this distinction by carrying out explicit quantum-mechanical pi-orbital calculations. See ref. 1 for other literature citations.
  • 27
    • 36549094943 scopus 로고
    • J. A. Pople, M. Head-Gordon, D. J. Fox, K. Raghavachari, L. A. Curtiss, J. Chem. Phys., 90, 5622-5629 (1989); J. A. Pople, H. B. Schlegel, R. Krishnan, D. J. Defrees, J. S. Binkley, M. J. Frisch, R. A. Whiteside, R. F. Hout, and W. J. Hehre, Int. J. Quantum Chem. Symp., 15, 269 (1981).
    • (1989) J. Chem. Phys. , vol.90 , pp. 5622-5629
    • Pople, J.A.1    Head-Gordon, M.2    Fox, D.J.3    Raghavachari, K.4    Curtiss, L.A.5
  • 29
    • 5244327731 scopus 로고    scopus 로고
    • note
    • 2 in work carried out before refined values for the torsion parameter had been obtained. Such values held torsion angles to within a degree or two of the reference values even in the most demanding cases.
  • 30
    • 5244331099 scopus 로고    scopus 로고
    • Merck & Co., Inc. (unpublished research)
    • B. L. Bush and T. A. Halgren, Merck & Co., Inc. (unpublished research).
    • Bush, B.L.1    Halgren, T.A.2
  • 33
    • 5244289036 scopus 로고    scopus 로고
    • note
    • Optimized in this work using CHARMm as accessed by QUANTA 3.3 from Molecular Simulations, Inc. (San Diego, CA). The Release 3.3 parameters differ from the 3.2 set used in ref. 7, but the molecular geometries usually are quite similar.
  • 58
    • 0001719619 scopus 로고
    • K. Takagi and T. Kojima, J. Phys. Soc. Jpn., 30, 1145-1157 (1971). Note that "HCN" angle of 110°16′ listed in Table XX of this reference is actually the "HNC" angle; the "NCH" angle of 110.9° listed in Table I of this work has been computed from the other structural parameters given by Takagi and Kojima.
    • (1971) J. Phys. Soc. Jpn. , vol.30 , pp. 1145-1157
    • Takagi, K.1    Kojima, T.2
  • 68
    • 5244223154 scopus 로고    scopus 로고
    • personal communication from K.K to N.L.A., as cited in ref. 5
    • Y. Egawa, S. Yamamoto, H. Kambra, and K. Kuchitsu, personal communication from K.K to N.L.A., as cited in ref. 5.
    • Egawa, Y.1    Yamamoto, S.2    Kambra, H.3    Kuchitsu, K.4
  • 74
    • 0011159561 scopus 로고
    • J. R. Durig and C. W. Hawley, J. Chem. Phys., 57, 1426 (1972); A. Almenninger, I. M. Afinsen and A. Haaland, Acta. Chem. Scand., 24, 43 (1970).
    • (1972) J. Chem. Phys. , vol.57 , pp. 1426
    • Durig, J.R.1    Hawley, C.W.2
  • 79
    • 84987028551 scopus 로고
    • N. L. Allinger, M. Quinn, M. Rahman, and K. Chen, J. Phys. Org. Chem., 4, 647-658 (1991). Note that only a single, average C-H stretching frequency has been reported for ethanethiol (cf. Table II). Exclusion of the C-H stretches, however, does not appreciably change the listed results.
    • (1991) J. Phys. Org. Chem. , vol.4 , pp. 647-658
    • Allinger, N.L.1    Quinn, M.2    Rahman, M.3    Chen, K.4
  • 83
    • 0001377092 scopus 로고
    • and references therein
    • H. Guo and M. Karplus, J. Chem. Phys., 94, 3679-3699 (1991), and references therein.
    • (1991) J. Chem. Phys. , vol.94 , pp. 3679-3699
    • Guo, H.1    Karplus, M.2
  • 86
  • 89
    • 0000044104 scopus 로고
    • J. C. Evans, J. Chem. Phys., 22, 1228 (1965); J. Chem. Phys., 31, 1435 (1959).
    • (1965) J. Chem. Phys. , vol.22 , pp. 1228
    • Evans, J.C.1
  • 90
    • 84914264218 scopus 로고
    • J. C. Evans, J. Chem. Phys., 22, 1228 (1965); J. Chem. Phys., 31, 1435 (1959).
    • (1959) J. Chem. Phys. , vol.31 , pp. 1435
  • 105
    • 0001242489 scopus 로고
    • J. L. Duncan, D. C. McKean, and P. D. Mallinson, J. Mol. Spectrosc., 45, 221-246 (1973). See also: J. L. Duncan, F. Hegelund, R. B. Foster, G. W. Hills, and W. J. Jones, J. Mol. Spectrosc., 61, 470-473 (1976).
    • (1973) J. Mol. Spectrosc. , vol.45 , pp. 221-246
    • Duncan, J.L.1    McKean, D.C.2    Mallinson, P.D.3
  • 108
    • 5244227874 scopus 로고    scopus 로고
    • note
    • Theoretical frequencies obtained in this work by scaling HF/6-31G* frequencies computed at the optimized HF/6-31G* geometry by a factor of 0.90 (cf. ref. 19). We used these values because the available sets of experimental frequencies (cf. ref. 69) were incomplete.
  • 109
    • 0002875568 scopus 로고
    • S. G. Frankiss, J. Mol. Struct., 3, 89-101 (1969). The results cited are liquid-phase frequencies from Table 3. The frequencies bracketed in Table II are values inferred from overtone bands.
    • (1969) J. Mol. Struct. , vol.3 , pp. 89-101
    • Frankiss, S.G.1
  • 125
    • 5244274050 scopus 로고    scopus 로고
    • note
    • These comparisons were made by expressing the normal coordinates in the redundant internal coordinate framework using code developed by Dr. Robert B. Nachbar of the Merck Research Laboratoreis. We thank Dr. Nachbar for making his code available.
  • 127
    • 0000788266 scopus 로고
    • and references therein
    • J. D. Dunnitz and F. K. Winkler, Acta Cryst., B31, 251-263 (1975), and references therein.
    • (1975) Acta Cryst. , vol.B31 , pp. 251-263
    • Dunnitz, J.D.1    Winkler, F.K.2
  • 131
    • 33751158761 scopus 로고
    • J. Sponer and P. Hobza, J. Phys. Chem., 98, 3161-3164 (1994); J. Sponer and P. Hobza, J. Mol. Struct., 304, 35-40 (1994).
    • (1994) J. Phys. Chem. , vol.98 , pp. 3161-3164
    • Sponer, J.1    Hobza, P.2
  • 132
    • 37948998601 scopus 로고
    • J. Sponer and P. Hobza, J. Phys. Chem., 98, 3161-3164 (1994); J. Sponer and P. Hobza, J. Mol. Struct., 304, 35-40 (1994).
    • (1994) J. Mol. Struct. , vol.304 , pp. 35-40
    • Sponer, J.1    Hobza, P.2
  • 133
    • 5244253389 scopus 로고    scopus 로고
    • note
    • 1/2 larger and smaller; and (ii) adding a next-higher angular momentum function (f for C, N, and O; d for H) having an exponent equal to 1.3 times the single d or p exponent in the TZP basis set.
  • 135
    • 5244294824 scopus 로고    scopus 로고
    • note
    • The MMFF94 parameters are included in Appendix B in the Supplementary Material for part I (ref. 1) and are available in computer-readable ASCII format.
  • 136
    • 5244265053 scopus 로고    scopus 로고
    • note
    • Appendix A is available in Supplementary Material (see footnote * on the first page of this article).
  • 140
    • 0001947291 scopus 로고
    • One ab initio calculation does predict a planar cis structure: cf. D. Feller and E. R. Davidson, Theor. Chim. Acta, 68, 57-67 (1985). However, this calculation, which found cis and gauche structures to be virtually identical in energy, omitted polarization functions and included too few orbitals in the electron-correlation calculation to obtain more than a small fraction of the correlation energy.
    • (1985) Theor. Chim. Acta , vol.68 , pp. 57-67
    • Feller, D.1    Davidson, E.R.2
  • 141
    • 0005434008 scopus 로고
    • For a recent example of a significant experimental error that was corrected on the basis of information from ab initio calcaultions, including calculations at the MP2/6-31G* level used in the present work, see: B. J Smith and L. Radom, J. Am. Chem. Soc., 112, 7525-7528 (1990).
    • (1990) J. Am. Chem. Soc. , vol.112 , pp. 7525-7528
    • Smith, B.J.1    Radom, L.2
  • 143
    • 2942542478 scopus 로고
    • New York, Chapter 6
    • For early studies examining the accuracy of MP2 calculations, see: W. J. Hehre, L. Radom, P. v. R Schleyer, and J. A. Pople, Ab Initio Molecular Orbital Theory, Wiley. New York, 1986, Chapter 6; D. J. DeFrees, B. A. Levi, S. K. Pollack, W. J. Hehre, J. S. Binkley, and J. A. Pople, J. Am. Chem. Soc., 101, 4085-4089 (1979).
    • (1986) Ab Initio Molecular Orbital Theory, Wiley
    • Hehre, W.J.1    Radom, L.2    Schleyer, P.V.R.3    Pople, J.A.4
  • 144
    • 2942542478 scopus 로고
    • For early studies examining the accuracy of MP2 calculations, see: W. J. Hehre, L. Radom, P. v. R Schleyer, and J. A. Pople, Ab Initio Molecular Orbital Theory, Wiley. New York, 1986, Chapter 6; D. J. DeFrees, B. A. Levi, S. K. Pollack, W. J. Hehre, J. S. Binkley, and J. A. Pople, J. Am. Chem. Soc., 101, 4085-4089 (1979).
    • (1979) J. Am. Chem. Soc. , vol.101 , pp. 4085-4089
    • DeFrees, D.J.1    Levi, B.A.2    Pollack, S.K.3    Hehre, W.J.4    Binkley, J.S.5    Pople, J.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.