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Volumn 21, Issue 5, 2003, Pages 449-462

Assessing the performance of OMEGA with respect to retrieving bioactive conformations

Author keywords

Bioactive conformations; Conformational analysis; High resolution X ray crystallography; OMEGA; Shape searching

Indexed keywords

BIOACTIVE CONFORMATIONS; LIGAND-PROTEIN COMPLEXES;

EID: 0347296066     PISSN: 10933263     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1093-3263(02)00204-8     Document Type: Article
Times cited : (298)

References (24)
  • 1
    • 0030534377 scopus 로고
    • Similarity searching in databases of chemical structures
    • K.B. Lipkowitz, D.B. Boyd (Eds.), VCH Publishers, New York
    • G.M. Downs, P. Willett, Similarity searching in databases of chemical structures, in: K.B. Lipkowitz, D.B. Boyd (Eds.), Reviews in Computational Chemistry, vol. 7, VCH Publishers, New York, 1995, pp. 1-66.
    • (1995) Reviews in Computational Chemistry , vol.7 , pp. 1-66
    • Downs, G.M.1    Willett, P.2
  • 2
    • 0026642983 scopus 로고
    • 3D database searching in drug design
    • (a) Martin Y.C. 3D database searching in drug design. J. Med. Chem. 35:1992;2145-2154
    • (1992) J. Med. Chem. , vol.35 , pp. 2145-2154
    • Martin, Y.C.1
  • 3
    • 0030534012 scopus 로고
    • Three-dimensional structure database searches
    • K.B. Lipkowitz, D.B. Boyd (Eds.), VCH Publishers, New York
    • (b) A.C. Good, J.S. Mason, Three-dimensional structure database searches, in: K.B. Lipkowitz, D.B. Boyd (Eds.), Reviews in Computational Chemistry, vol. 7, VCH Publishers, New York, 1995, pp. 67-117.
    • (1995) Reviews in Computational Chemistry , vol.7 , pp. 67-117
    • Good, A.C.1    Mason, J.S.2
  • 5
    • 0028337945 scopus 로고
    • Flexible 3D searching: The directed tweak technique
    • Hurst T. Flexible 3D searching: the directed tweak technique. J. Chem. Inf. Comput. Sci. 34:1994;190-196.
    • (1994) J. Chem. Inf. Comput. Sci. , vol.34 , pp. 190-196
    • Hurst, T.1
  • 6
    • 0002754682 scopus 로고
    • Catalyst pharmacophore models and their utility as queries for searching 3D databases
    • H. Van de Waterbeemd, B. Testa, G. Folkers (Eds.), VHCA, Basel
    • (a) P.W. Sprague, R. Hoffman, Catalyst pharmacophore models and their utility as queries for searching 3D databases, in: H. Van de Waterbeemd, B. Testa, G. Folkers (Eds.), Computer-Assisted Lead Finding and Optimization, VHCA, Basel, 1990, pp. 230-240
    • (1990) Computer-Assisted Lead Finding and Optimization , pp. 230-240
    • Sprague, P.W.1    Hoffman, R.2
  • 7
    • 0001109246 scopus 로고    scopus 로고
    • A fast method of molecular shape comparison. A simple application of a Gaussian description of molecular shape
    • (b) Grant J.A., Gallardo M.A., Pickup B.T. A fast method of molecular shape comparison. A simple application of a Gaussian description of molecular shape. J. Comp. Chem. 17:1996;1653-1666.
    • (1996) J. Comp. Chem. , vol.17 , pp. 1653-1666
    • Grant, J.A.1    Gallardo, M.A.2    Pickup, B.T.3
  • 8
    • 0035555863 scopus 로고    scopus 로고
    • Reproducing the conformations of protein-bound ligands: A critical evaluation of several popular conformational searching tools
    • Boström J. Reproducing the conformations of protein-bound ligands: a critical evaluation of several popular conformational searching tools. J. Comput. Aided. Mol. Des. 15:2001;1137-1152.
    • (2001) J. Comput. Aided. Mol. Des. , vol.15 , pp. 1137-1152
    • Boström, J.1
  • 13
    • 84889165248 scopus 로고    scopus 로고
    • AstraZeneca R&D Mölndal, Mölndal, Sweden (personal communication)
    • Jens Sadowski, AstraZeneca R&D Mölndal, Mölndal, Sweden (personal communication).
    • Sadowski, J.1
  • 14
    • 0028466540 scopus 로고
    • Comparison of automatic three-dimensional model builders using 639 X-ray structures
    • Sadowski J., Gasteiger J., Klebe G. Comparison of automatic three-dimensional model builders using 639 X-ray structures. J. Chem. Inf. Comput. Sci. 34:1994;1000-1008.
    • (1994) J. Chem. Inf. Comput. Sci. , vol.34 , pp. 1000-1008
    • Sadowski, J.1    Gasteiger, J.2    Klebe, G.3
  • 16
    • 0020799674 scopus 로고
    • Some guidelines for constructing exact D-optimal designs on convex design spaces
    • Johnson M.E., Nachtsheim C.J. Some guidelines for constructing exact D-optimal designs on convex design spaces. Technometrics. 25:1983;271-277.
    • (1983) Technometrics , vol.25 , pp. 271-277
    • Johnson, M.E.1    Nachtsheim, C.J.2
  • 17
    • 0001681052 scopus 로고
    • The collinearity problem in linear regression. The partial least squares (PLS) approach to generalized inverses
    • Wold S., Ruhe A., Wold H., Dunn W.J. III The collinearity problem in linear regression. The partial least squares (PLS) approach to generalized inverses. SIAM J. Sci. Stat. Comput. 5:1984;735-743.
    • (1984) SIAM J. Sci. Stat. Comput. , vol.5 , pp. 735-743
    • Wold, S.1    Ruhe, A.2    Wold, H.3    Dunn W.J. III4
  • 19
    • 84889156915 scopus 로고    scopus 로고
    • Corina Molecular Networks, GmbH Computerchemie Langemarckplatz 1, Erlangen, Germany, 2000
    • Corina Molecular Networks, GmbH Computerchemie Langemarckplatz 1, Erlangen, Germany, 2000.
  • 21
    • 84876845097 scopus 로고    scopus 로고
    • MDL Information Systems Inc., Prous Science Publishers
    • MDDR - A Structural Database, MDL Information Systems Inc., Prous Science Publishers.
    • MDDR - A Structural Database
  • 22
    • 84951601886 scopus 로고
    • Cross-validatory estimation of the number of components in factor and principal components models
    • Wold S. Cross-validatory estimation of the number of components in factor and principal components models. Technometrics. 20:1978;397-405.
    • (1978) Technometrics , vol.20 , pp. 397-405
    • Wold, S.1
  • 24
    • 84889123743 scopus 로고    scopus 로고
    • AstraZeneca R&D Alderley Park, UK. personal communication
    • Andrew Grant, AstraZeneca R&D Alderley Park, UK, http://www.eyesopen.com/products/shape.html (personal communication).
    • Grant, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.