-
1
-
-
0036405278
-
DNA microarray technology: Devices, systems, and applications
-
Heller, M.J. (2002) DNA microarray technology: devices, systems, and applications. Annu. Rev. Biomed. Eng., 4, 129-153.
-
(2002)
Annu. Rev. Biomed. Eng.
, vol.4
, pp. 129-153
-
-
Heller, M.J.1
-
2
-
-
0242521682
-
Set association analysis of SNP case-control and microarray data
-
Ott, J. and Hoh, J. (2003) Set association analysis of SNP case-control and microarray data. J. Comput. Biol., 10, 569-574.
-
(2003)
J. Comput. Biol.
, vol.10
, pp. 569-574
-
-
Ott, J.1
Hoh, J.2
-
3
-
-
2342641426
-
A gene-specific DNA sequencing chip for exploring molecular evolutionary change
-
Fedrigo, O. and Naylor, G. (2004) A gene-specific DNA sequencing chip for exploring molecular evolutionary change. Nucleic Acids Res., 32, 1208-1213.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1208-1213
-
-
Fedrigo, O.1
Naylor, G.2
-
4
-
-
0345831996
-
Strengths and limitations of commercial tests for hepatitis C virus RNA quantification
-
Morishima, C., Chung, M., Ng, K.W., Brambilla, D.J. and Gretch, D.R. (2004) Strengths and limitations of commercial tests for hepatitis C virus RNA quantification. J. Clin. Microbiol., 42, 421-425.
-
(2004)
J. Clin. Microbiol.
, vol.42
, pp. 421-425
-
-
Morishima, C.1
Chung, M.2
Ng, K.W.3
Brambilla, D.J.4
Gretch, D.R.5
-
5
-
-
0041386130
-
Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA
-
DeSantis, T.Z., Dubosarskiy, I., Murray, S.R. and Andersen, G.L. (2003) Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA. Bioinformatics, 19, 1461-1468.
-
(2003)
Bioinformatics
, vol.19
, pp. 1461-1468
-
-
Desantis, T.Z.1
Dubosarskiy, I.2
Murray, S.R.3
Andersen, G.L.4
-
6
-
-
0025804117
-
Synthesis from DNA of a molecule with the connectivity of a cube
-
Chen, J.H. and Seeman, N.C. (1991) Synthesis from DNA of a molecule with the connectivity of a cube. Nature, 350, 631-633.
-
(1991)
Nature
, vol.350
, pp. 631-633
-
-
Chen, J.H.1
Seeman, N.C.2
-
7
-
-
0035666705
-
Biomolecular electronics in the twenty-first
-
century
-
Phadke, R.S. (2001) Biomolecular electronics in the twenty-first century. Appl. Biochem. Biotechnol., 96, 269-276.
-
(2001)
Appl. Biochem. Biotechnol.
, vol.96
, pp. 269-276
-
-
Phadke, R.S.1
-
8
-
-
0034632783
-
A DNA-fuelled molecular machine made of DNA
-
Yurke, B., Turberfield, A.J., Mills, A.P. Jr, Simmel, F.C. and Neumann, J.L. (2000) A DNA-fuelled molecular machine made of DNA. Nature, 406, 605-608.
-
(2000)
Nature
, vol.406
, pp. 605-608
-
-
Yurke, B.1
Turberfield, A.J.2
Mills Jr., A.P.3
Simmel, F.C.4
Neumann, J.L.5
-
9
-
-
0025817256
-
Second structural motif for recognition of DNA by oligonucleotide- directed triple-helix formation
-
Beal, P.A. and Dervan, P.B. (1991) Second structural motif for recognition of DNA by oligonucleotide-directed triple-helix formation. Science, 251, 1360-1363.
-
(1991)
Science
, vol.251
, pp. 1360-1363
-
-
Beal, P.A.1
Dervan, P.B.2
-
10
-
-
53549088367
-
A Janus-Wedge DNA triplex with A-W1-T and G-W2-C base triplets
-
Chen, H., Meena, and McLaughlin, L.W. (2008) A Janus-Wedge DNA triplex with A-W1-T and G-W2-C base triplets. J. Am. Chem. Soc., 130, 13190-131901.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 13190-131901
-
-
Meena, C.H.1
McLaughlin, L.W.2
-
11
-
-
0025942240
-
Sequence specificity in triple-helix formation: Experimental and theoretical studies of the effect of mismatches on triplex stability
-
Mergny, J.L., Sun, J.S., Rougee, M., Montenay-Garestier, T., Barcelo, F., Chomilier, J. and Helene, C. (1991) Sequence specificity in triple-helix formation: experimental and theoretical studies of the effect of mismatches on triplex stability. Biochemistry, 30, 9791-9798.
-
(1991)
Biochemistry
, vol.30
, pp. 9791-9798
-
-
Mergny, J.L.1
Sun, J.S.2
Rougee, M.3
Montenay-Garestier, T.4
Barcelo, F.5
Chomilier, J.6
Helene, C.7
-
12
-
-
0035822654
-
PH and cation effects on the properties of parallel pyrimidine motif DNA triplexes
-
Sugimoto, N., Wu, P., Hara, H. and Kawamoto, Y. (2001) pH and cation effects on the properties of parallel pyrimidine motif DNA triplexes. Biochemistry, 40, 9396-9405.
-
(2001)
Biochemistry
, vol.40
, pp. 9396-9405
-
-
Sugimoto, N.1
Wu, P.2
Hara, H.3
Kawamoto, Y.4
-
13
-
-
0025604606
-
Thermodynamic characterization of the stability and the melting behavior of a DNA triplex: A spectroscopic and calorimetric study
-
Plum, G.E., Park, Y.W., Singleton, S.F., Dervan, P.B. and Breslauer, K.J. (1990) Thermodynamic characterization of the stability and the melting behavior of a DNA triplex: a spectroscopic and calorimetric study. Proc. Natl Acad. Sci. U.S.A., 87, 9436-9440.
-
(1990)
Proc. Natl Acad. Sci. U.S.A.
, vol.87
, pp. 9436-9440
-
-
Plum, G.E.1
Park, Y.W.2
Singleton, S.F.3
Dervan, P.B.4
Breslauer, K.J.5
-
14
-
-
0042203814
-
Effect of cytosine protonation and cation on thermodynamic properties of parallel DNA triplex family
-
Wu, P., Hara, H., Kawamoto, Y. and Sugimoto, N. (2001) Effect of cytosine protonation and cation on thermodynamic properties of parallel DNA triplex family. Nucleic Acids Res. Suppl., 39-40.
-
(2001)
Nucleic Acids Res. Suppl.
, pp. 39-40
-
-
Wu, P.1
Hara, H.2
Kawamoto, Y.3
Sugimoto, N.4
-
15
-
-
0028030641
-
Conformational transitions ofduplex and triplex nucleic acid helices: Thermodynamic analysis of effects ofsalt concentration on stability using preferential interaction coefficients
-
Bond, J.P., Anderson, C.F. and Record, M.T., Jr. (1994) Conformational transitions ofduplex and triplex nucleic acid helices: thermodynamic analysis of effects ofsalt concentration on stability using preferential interaction coefficients. Biophys J, 67, 825-836.
-
(1994)
Biophys J
, vol.67
, pp. 825-836
-
-
Bond, J.P.1
Anderson, C.F.2
Record Jr., M.T.3
-
16
-
-
70349747005
-
I-Motif quadruplex DNA-based biosensor for distinguishing single- and multiwalled carbon nanotubes
-
Peng, Y., Wang, X., Xiao, Y., Feng, L., Zhao, C., Ren, J. and Qu, X. (2009) i-Motif quadruplex DNA-based biosensor for distinguishing single- and multiwalled carbon nanotubes. J. Am. Chem. Soc., 131, 13813-13818.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 13813-13818
-
-
Peng, Y.1
Wang, X.2
Xiao, Y.3
Feng, L.4
Zhao, C.5
Ren, J.6
Qu, X.7
-
17
-
-
36849092925
-
Single-walled carbon nanotubes binding to human telomeric i-motif DNA: Significant acceleration of S1 nuclease cleavage rate
-
Peng, Y., Li, X., Ren, J. and Qu, X. (2007) Single-walled carbon nanotubes binding to human telomeric i-motif DNA: significant acceleration of S1 nuclease cleavage rate. Chem. Commun., 5176-5178.
-
(2007)
Chem. Commun.
, pp. 5176-5178
-
-
Peng, Y.1
Li, X.2
Ren, J.3
Qu, X.4
-
18
-
-
84867022915
-
-
Chen, Y., Qu, K., Zhao, C., Wu, L., Ren, J., Wang, J. and Qu, X. (2012) Nat Commun, 3, 1074.
-
(2012)
Nat Commun
, vol.3
, pp. 1074
-
-
Chen, Y.1
Qu, K.2
Zhao, C.3
Wu, L.4
Ren, J.5
Wang, J.6
Qu, X.7
-
19
-
-
33845288979
-
DNA logic gates based on structural polymorphism of telomere DNA molecules responding to chemical input signals
-
Miyoshi, D., Inoue, M. and Sugimoto, N. (2006) DNA logic gates based on structural polymorphism of telomere DNA molecules responding to chemical input signals. Angew. Chem. Int. Ed. Engl., 45, 7716-7719.
-
(2006)
Angew. Chem. Int. Ed. Engl.
, vol.45
, pp. 7716-7719
-
-
Miyoshi, D.1
Inoue, M.2
Sugimoto, N.3
-
20
-
-
33750983331
-
Influence of storage temperature on the stability of HIV-1 RNA and HSV-2 DNA in cervicovaginal secretions collected by vaginal washing
-
Legoff, J., Tanton, C., Lecerf, M., Gresenguet, G., Nzambi, K., Bouhlal, H., Weiss, H. and Belec, L. (2006) Influence of storage temperature on the stability of HIV-1 RNA and HSV-2 DNA in cervicovaginal secretions collected by vaginal washing. J. Virol. Methods, 138, 196-200.
-
(2006)
J. Virol. Methods
, vol.138
, pp. 196-200
-
-
Legoff, J.1
Tanton, C.2
Lecerf, M.3
Gresenguet, G.4
Nzambi, K.5
Bouhlal, H.6
Weiss, H.7
Belec, L.8
-
21
-
-
0015504248
-
Rate of depurination of native deoxyribonucleic acid
-
Lindahl, T. and Nyberg, B. (1972) Rate of depurination of native deoxyribonucleic acid. Biochemistry, 11, 3610-3618.
-
(1972)
Biochemistry
, vol.11
, pp. 3610-3618
-
-
Lindahl, T.1
Nyberg, B.2
-
22
-
-
34547613317
-
Regulation of DNA nucleases by molecular crowding
-
Sasaki, Y., Miyoshi, D. and Sugimoto, N. (2007) Regulation of DNA nucleases by molecular crowding. Nucleic Acids Res., 35, 4086-4093.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4086-4093
-
-
Sasaki, Y.1
Miyoshi, D.2
Sugimoto, N.3
-
23
-
-
51649092232
-
Systematic evaluation of single mismatch stability predictors for fluorescence in situ hybridization
-
Yilmaz, L.S., Bergsven, L.I. and Noguera, D.R. (2008) Systematic evaluation of single mismatch stability predictors for fluorescence in situ hybridization. Environ. Microbiol., 10, 2872-2885.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 2872-2885
-
-
Yilmaz, L.S.1
Bergsven, L.I.2
Noguera, D.R.3
-
24
-
-
68849099899
-
Ionic-liquid materials for the electrochemical challenges of the future
-
Armand, M., Endres, F., MacFarlane, D.R., Ohno, H. and Scrosati, B. (2009) Ionic-liquid materials for the electrochemical challenges of the future. Nat. Mater., 8, 621-629.
-
(2009)
Nat. Mater.
, vol.8
, pp. 621-629
-
-
Armand, M.1
Endres, F.2
MacFarlane, D.R.3
Ohno, H.4
Scrosati, B.5
-
25
-
-
0347417134
-
Room-temperature ionic liquids. Solvents for synthesis and catalysis
-
Welton, T. (1999) Room-temperature ionic liquids. Solvents for synthesis and catalysis. Chem. Rev., 99, 2071-2084.
-
(1999)
Chem. Rev.
, vol.99
, pp. 2071-2084
-
-
Welton, T.1
-
26
-
-
2342644853
-
Dpo4 is hindered in extending a G.T mismatch by a reverse wobble
-
Trincao, J., Johnson, R.E., Wolfle, W.T., Escalante, C.R., Prakash, S., Prakash, L. and Aggarwal, A.K. (2004) Dpo4 is hindered in extending a G.T mismatch by a reverse wobble. Nat. Struct. Mol. Biol., 11, 457-462.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 457-462
-
-
Trincao, J.1
Johnson, R.E.2
Wolfle, W.T.3
Escalante, C.R.4
Prakash, S.5
Prakash, L.6
Aggarwal, A.K.7
-
27
-
-
34547132296
-
Solubility and stability of cytochrome c in hydrated ionic liquids: Effect of oxo acid residues and kosmotropicity
-
Fujita, K., MacFarlane, D.R., Forsyth, M., Yoshizawa-Fujita, M., Murata, K., Nakamura, N. and Ohno, H. (2007) Solubility and stability of cytochrome c in hydrated ionic liquids: effect of oxo acid residues and kosmotropicity. Biomacromolecules, 8, 2080-2086.
-
(2007)
Biomacromolecules
, vol.8
, pp. 2080-2086
-
-
Fujita, K.1
MacFarlane, D.R.2
Forsyth, M.3
Yoshizawa-Fujita, M.4
Murata, K.5
Nakamura, N.6
Ohno, H.7
-
28
-
-
78649527774
-
Enzymatic activity and thermal stability of metallo proteins in hydrated ionic liquids
-
Fujita, K. and Ohno, H. (2010) Enzymatic activity and thermal stability of metallo proteins in hydrated ionic liquids. Biopolymers, 93, 1093-1099.
-
(2010)
Biopolymers
, vol.93
, pp. 1093-1099
-
-
Fujita, K.1
Ohno, H.2
-
29
-
-
0034583251
-
Ionic liquids. Green solvents for the future
-
Earle, M.J. and Seddon, K.R. (2000) Ionic liquids. Green solvents for the future. Pure Appl. Chem., 72, 1391-1398.
-
(2000)
Pure Appl. Chem.
, vol.72
, pp. 1391-1398
-
-
Earle, M.J.1
Seddon, K.R.2
-
31
-
-
0037220832
-
Novel solvent properties of choline chloride/urea mixtures
-
Abbott, A.P., Capper, G., Davies, D.L., Rasheed, R.K. and Tambyrajah, V. (2003) Novel solvent properties of choline chloride/urea mixtures. Chem. Commun. (Camb.), 70-71.
-
(2003)
Chem. Commun. (Camb.)
, pp. 70-71
-
-
Abbott, A.P.1
Capper, G.2
Davies, D.L.3
Rasheed, R.K.4
Tambyrajah, V.5
-
32
-
-
84881087359
-
Thermal unfolding and refolding of lysozyme in deep eutectic solvents and their aqueous dilutions
-
Esquembre, R., Sanz, J.M., Wall, J.G., del Monte, F., Mateo, C.R. and Ferrer, M.L. (2013) Thermal unfolding and refolding of lysozyme in deep eutectic solvents and their aqueous dilutions. Phys. Chem. Chem. Phys., 15, 11248-11256.
-
(2013)
Phys. Chem. Chem. Phys.
, vol.15
, pp. 11248-11256
-
-
Esquembre, R.1
Sanz, J.M.2
Wall, J.G.3
Del Monte, F.4
Mateo, C.R.5
Ferrer, M.L.6
-
33
-
-
67650602063
-
Characterization of thermal behavior of deep eutectic solvents and their potential as drug solubilization vehicles
-
Morrison, H.G., Sun, C.C. and Neervannan, S. (2009) Characterization of thermal behavior of deep eutectic solvents and their potential as drug solubilization vehicles. Int. J. Pharm., 378, 136-139.
-
(2009)
Int. J. Pharm.
, vol.378
, pp. 136-139
-
-
Morrison, H.G.1
Sun, C.C.2
Neervannan, S.3
-
34
-
-
77949359552
-
Bacteria incorporation in deep-eutectic solvents through freeze-drying
-
Gutierrez, M.C., Ferrer, M.L., Yuste, L., Rojo, F. and del Monte, F. (2010) Bacteria incorporation in deep-eutectic solvents through freeze-drying. Angew. Chem. Int. Ed. Engl., 49, 2158-2162.
-
(2010)
Angew. Chem. Int. Ed. Engl.
, vol.49
, pp. 2158-2162
-
-
Gutierrez, M.C.1
Ferrer, M.L.2
Yuste, L.3
Rojo, F.4
Del Monte, F.5
-
35
-
-
0001550068
-
Predicting DNA duplex stability from the base sequence
-
Breslauer, K.J., Frank, R., Blocker, H. and Marky, L.A. (1986) Predicting DNA duplex stability from the base sequence. Proc. Natl Acad. Sci. U.S.A., 83, 3746-3750.
-
(1986)
Proc. Natl Acad. Sci. U.S.A.
, vol.83
, pp. 3746-3750
-
-
Breslauer, K.J.1
Frank, R.2
Blocker, H.3
Marky, L.A.4
-
36
-
-
0037187806
-
Melting of the solvent structure around a RNA duplex: A molecular dynamics simulation study
-
Auffinger, P. and Westhof, E. (2002) Melting of the solvent structure around a RNA duplex: a molecular dynamics simulation study. Biophys. Chem., 95, 203-210.
-
(2002)
Biophys. Chem.
, vol.95
, pp. 203-210
-
-
Auffinger, P.1
Westhof, E.2
-
37
-
-
0035905574
-
Hydrophobic groups stabilize the hydration shell of 2′-O-methylated RNA duplexes
-
Auffinger, P. and Westhof, E. (2001) Hydrophobic groups stabilize the hydration shell of 2′-O-methylated RNA duplexes. Angew. Chem. Int. Ed. Engl., 40, 4648-4650.
-
(2001)
Angew. Chem. Int. Ed. Engl.
, vol.40
, pp. 4648-4650
-
-
Auffinger, P.1
Westhof, E.2
-
39
-
-
0032851951
-
Sodium and chlorine ions as part of the DNA solvation shell
-
Feig, M. and Pettitt, B.M. (1999) Sodium and chlorine ions as part of the DNA solvation shell. Biophys. J., 77, 1769-1781.
-
(1999)
Biophys. J.
, vol.77
, pp. 1769-1781
-
-
Feig, M.1
Pettitt, B.M.2
-
40
-
-
0006627150
-
A molecular simulation picture of DNA hydration around A- and B-DNA
-
Feig, M. and Pettitt, B.M. (1998) A molecular simulation picture of DNA hydration around A- and B-DNA. Biopolymers, 48, 199-209.
-
(1998)
Biopolymers
, vol.48
, pp. 199-209
-
-
Feig, M.1
Pettitt, B.M.2
-
41
-
-
0033524401
-
Effects of hydration, ion release, and excluded volume on the melting of triplex and duplex DNA
-
Spink, C.H. and Chaires, J.B. (1999) Effects of hydration, ion release, and excluded volume on the melting of triplex and duplex DNA. Biochemistry, 38, 496-508.
-
(1999)
Biochemistry
, vol.38
, pp. 496-508
-
-
Spink, C.H.1
Chaires, J.B.2
-
42
-
-
33747144250
-
Effect of ethylene glycol, urea, and N-methylated glycines on DNA thermal stability: The role of DNA base pair composition and hydration
-
Nordstrom, L.J., Clark, C.A., Andersen, B., Champlin, S.M. and Schwinefus, J.J. (2006) Effect of ethylene glycol, urea, and N-methylated glycines on DNA thermal stability: the role of DNA base pair composition and hydration. Biochemistry, 45, 9604-9614.
-
(2006)
Biochemistry
, vol.45
, pp. 9604-9614
-
-
Nordstrom, L.J.1
Clark, C.A.2
Andersen, B.3
Champlin, S.M.4
Schwinefus, J.J.5
-
43
-
-
0017820499
-
Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: The roles of ion association or release, screening, and ion effects on water activity
-
Record, M.T. Jr, Anderson, C.F. and Lohman, T.M. (1978) Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity. Q. Rev. Biophys., 11, 103-178.
-
(1978)
Q. Rev. Biophys.
, vol.11
, pp. 103-178
-
-
Record Jr., M.T.1
Anderson, C.F.2
Lohman, T.M.3
-
44
-
-
1242264497
-
Hydration of short DNA, RNA and 2′-OMe oligonucleotides determined by osmotic stressing
-
Rozners, E. and Moulder, J. (2004) Hydration of short DNA, RNA and 2′-OMe oligonucleotides determined by osmotic stressing. Nucleic Acids Res., 32, 248-254.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 248-254
-
-
Rozners, E.1
Moulder, J.2
-
45
-
-
8744318698
-
Preferential interactions of glycine betaine and of urea with DNA: Implications for DNA hydration and for effects of these solutes on DNA stability
-
Hong, J., Capp, M.W., Anderson, C.F., Saecker, R.M., Felitsky, D.J., Anderson, M.W. and Record, M.T. Jr (2004) Preferential interactions of glycine betaine and of urea with DNA: implications for DNA hydration and for effects of these solutes on DNA stability. Biochemistry, 43, 14744-14758.
-
(2004)
Biochemistry
, vol.43
, pp. 14744-14758
-
-
Hong, J.1
Capp, M.W.2
Anderson, C.F.3
Saecker, R.M.4
Felitsky, D.J.5
Anderson, M.W.6
Record Jr., M.T.7
-
46
-
-
0013959237
-
The preferential interactions of polylysine and polyarginine with specific base sequences in DNA
-
Leng, M. and Felsenfeld, G. (1966) The preferential interactions of polylysine and polyarginine with specific base sequences in DNA. Proc. Natl Acad. Sci. U.S.A., 56, 1325-1332.
-
(1966)
Proc. Natl Acad. Sci. U.S.A.
, vol.56
, pp. 1325-1332
-
-
Leng, M.1
Felsenfeld, G.2
-
47
-
-
77649150774
-
Long-term structural and chemical stability of DNA in hydrated ionic liquids
-
Vijayaraghavan, R., Izgorodin, A., Ganesh, V., Surianarayanan, M. and MacFarlane, D.R. (2010) Long-term structural and chemical stability of DNA in hydrated ionic liquids. Angew. Chem. Int. Ed. Engl., 49, 1631-1633.
-
(2010)
Angew. Chem. Int. Ed. Engl.
, vol.49
, pp. 1631-1633
-
-
Vijayaraghavan, R.1
Izgorodin, A.2
Ganesh, V.3
Surianarayanan, M.4
MacFarlane, D.R.5
-
48
-
-
84856473602
-
A-T Base Pairs are More Stable Than G-C Base Pairs in a Hydrated Ionic Liquid
-
Tateishi-Karimata, H. and Sugimoto, N. (2012) A-T Base Pairs are More Stable Than G-C Base Pairs in a Hydrated Ionic Liquid. Angew. Chem. Int. Ed. Engl., 51, 1416-1419.
-
(2012)
Angew. Chem. Int. Ed. Engl.
, vol.51
, pp. 1416-1419
-
-
Tateishi-Karimata, H.1
Sugimoto, N.2
-
49
-
-
77956039924
-
DNA and RNA in anhydrous media: Duplex, triplex, and G-quadruplex secondary structures in a deep eutectic solvent
-
Mamajanov, I., Engelhart, A.E., Bean, H.D. and Hud, N.V. (2010) DNA and RNA in anhydrous media: duplex, triplex, and G-quadruplex secondary structures in a deep eutectic solvent. Angew. Chem. Int. Ed. Engl., 49, 6310-3314.
-
(2010)
Angew. Chem. Int. Ed. Engl.
, vol.49
, pp. 6310-3314
-
-
Mamajanov, I.1
Engelhart, A.E.2
Bean, H.D.3
Hud, N.V.4
-
50
-
-
33746600695
-
Structure of the human telomere in K+ solution: An intramolecular (3 + 1) G-quadruplex scaffold
-
Luu, K.N., Phan, A.T., Kuryavyi, V., Lacroix, L. and Patel, D.J. (2006) Structure of the human telomere in K+ solution: an intramolecular (3 + 1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 9963-9970
-
-
Luu, K.N.1
Phan, A.T.2
Kuryavyi, V.3
Lacroix, L.4
Patel, D.J.5
-
51
-
-
84890418685
-
Structure of the human telomere in Na+ solution: An antiparallel (2+2) G-quadruplex scaffold reveals additional diversity
-
Lim, K.W., Ng, V.C., Martin-Pintado, N., Heddi, B. and Phan, A.T. (2013) Structure of the human telomere in Na+ solution: an antiparallel (2+2) G-quadruplex scaffold reveals additional diversity. Nucleic Acids Res., 41, 10556-10562.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 10556-10562
-
-
Lim, K.W.1
Ng, V.C.2
Martin-Pintado, N.3
Heddi, B.4
Phan, A.T.5
-
52
-
-
84873190846
-
G-quadruplexes form ultrastable parallel structures in deep eutectic solvent
-
Zhao, C., Ren, J. and Qu, X. (2013) G-quadruplexes form ultrastable parallel structures in deep eutectic solvent. Langmuir, 29, 1183-1191.
-
(2013)
Langmuir
, vol.29
, pp. 1183-1191
-
-
Zhao, C.1
Ren, J.2
Qu, X.3
-
53
-
-
84862099518
-
Stable G-quadruplex structure in a hydrated ion pair: Cholinium cation and dihydrogen phosphate anion
-
Fujita, K. and Ohno, H. (2012) Stable G-quadruplex structure in a hydrated ion pair: cholinium cation and dihydrogen phosphate anion. Chem. Commun. (Camb.), 48, 5751-5753.
-
(2012)
Chem. Commun. (Camb.)
, vol.48
, pp. 5751-5753
-
-
Fujita, K.1
Ohno, H.2
-
54
-
-
33745374520
-
Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions
-
Miyoshi, D., Karimata, H. and Sugimoto, N. (2006) Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions. J. Am. Chem. Soc., 128, 7957-7963.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 7957-7963
-
-
Miyoshi, D.1
Karimata, H.2
Sugimoto, N.3
-
55
-
-
84555187082
-
Structure and stability of higher-order human telomeric quadruplexes
-
Petraccone, L., Spink, C., Trent, J.O., Garbett, N.C., Mekmaysy, C.S., Giancola, C. and Chaires, J.B. (2011) Structure and stability of higher-order human telomeric quadruplexes. J. Am. Chem. Soc., 133, 20951-20961.
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 20951-20961
-
-
Petraccone, L.1
Spink, C.2
Trent, J.O.3
Garbett, N.C.4
Mekmaysy, C.S.5
Giancola, C.6
Chaires, J.B.7
-
56
-
-
0029134549
-
Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes
-
Sugimoto, N., Nakano, S., Katoh, M., Matsumura, A., Nakamuta, H., Ohmichi, T., Yoneyama, M. and Sasaki, M. (1995) Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes. Biochemistry, 34, 11211-11216.
-
(1995)
Biochemistry
, vol.34
, pp. 11211-11216
-
-
Sugimoto, N.1
Nakano, S.2
Katoh, M.3
Matsumura, A.4
Nakamuta, H.5
Ohmichi, T.6
Yoneyama, M.7
Sasaki, M.8
-
57
-
-
79952075900
-
Optical melting measurements of nucleic acid thermodynamics
-
Schroeder, S.J. and Turner, D.H. (2009) Optical melting measurements of nucleic acid thermodynamics. Methods Enzymol., 468, 371-387.
-
(2009)
Methods Enzymol.
, vol.468
, pp. 371-387
-
-
Schroeder, S.J.1
Turner, D.H.2
-
58
-
-
84899737951
-
Control of stability and structure of nucleic acids using cosolutes
-
Tateishi-Karimta, H. and Sugimoto, N. (2014) Control of stability and structure of nucleic acids using cosolutes. Methods, 67, 151-158.
-
(2014)
Methods
, vol.67
, pp. 151-158
-
-
Tateishi-Karimta, H.1
Sugimoto, N.2
-
60
-
-
0030729345
-
Relative stability of triplexes containing different numbers of T.AT and C+.GC triplets
-
Keppler, M.D. and Fox, K.R. (1997) Relative stability of triplexes containing different numbers of T.AT and C+.GC triplets. Nucleic Acids Res., 25, 4644-4649.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4644-4649
-
-
Keppler, M.D.1
Fox, K.R.2
-
61
-
-
0030931438
-
DNA triple helix formation at oligopurine sites containing multiple contiguous pyrimidines
-
Gowers, D.M. and Fox, K.R. (1997) DNA triple helix formation at oligopurine sites containing multiple contiguous pyrimidines. Nucleic Acids Res., 25, 3787-3794.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3787-3794
-
-
Gowers, D.M.1
Fox, K.R.2
-
62
-
-
67749110113
-
Hydration of Watson-Crick base pairs and dehydration of Hoogsteen base pairs inducing structural polymorphism under molecular crowding conditions
-
Miyoshi, D., Nakamura, K., Tateishi-Karimata, H., Ohmichi, T. and Sugimoto, N. (2009) Hydration of Watson-Crick base pairs and dehydration of Hoogsteen base pairs inducing structural polymorphism under molecular crowding conditions. J. Am. Chem. Soc., 131, 3522-3531.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 3522-3531
-
-
Miyoshi, D.1
Nakamura, K.2
Tateishi-Karimata, H.3
Ohmichi, T.4
Sugimoto, N.5
-
63
-
-
0032999550
-
Selectivity of spermine homologson triplex DNA stabilization
-
Antony, T., Thomas, T, Shirahata, A., Sigal, L.H. and Thomas, T.J. (1990) Selectivity of spermine homologson triplex DNA stabilization. Antisense Nucleic Acid Drug Dev, 9, 221-231.
-
(1990)
Antisense Nucleic Acid Drug Dev
, vol.9
, pp. 221-231
-
-
Antony, T.1
Thomas, T.2
Shirahata, A.3
Sigal, L.H.4
Thomas, T.J.5
-
64
-
-
79951591766
-
New approaches toward recognition of nucleic acid triple helices
-
Arya, D.P. (2011) New approaches toward recognition of nucleic acid triple helices. Acc. Chem. Res., 44, 134-146.
-
(2011)
Acc. Chem. Res.
, vol.44
, pp. 134-146
-
-
Arya, D.P.1
-
65
-
-
74949121427
-
Triple recognition of B-DNA by a neomycin-Hoechst 33258-pyrene conjugate
-
Willis, B. and Arya, D.P. (2010) Triple recognition of B-DNA by a neomycin-Hoechst 33258-pyrene conjugate. Biochemistry, 49, 452-469.
-
(2010)
Biochemistry
, vol.49
, pp. 452-469
-
-
Willis, B.1
Arya, D.P.2
-
66
-
-
79956003290
-
Triplex inducer-directed self-assembly of single-walled carbon nanotubes: A triplex DNA-based approach for controlled manipulation of nanostructures
-
Zhao, C., Qu, K., Xu, C., Ren, J. and Qu, X. (2011) Triplex inducer-directed self-assembly of single-walled carbon nanotubes: a triplex DNA-based approach for controlled manipulation of nanostructures. Nucleic Acids Res., 39, 3939-3948.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3939-3948
-
-
Zhao, C.1
Qu, K.2
Xu, C.3
Ren, J.4
Qu, X.5
-
67
-
-
0027743418
-
Selectivity of polyamines in triplex DNA stabilization
-
Thomas, T. and Thomas, T.J. (1993) Selectivity of polyamines in triplex DNA stabilization. Biochemistry, 32, 14068-14074.
-
(1993)
Biochemistry
, vol.32
, pp. 14068-14074
-
-
Thomas, T.1
Thomas, T.J.2
-
68
-
-
84891884342
-
Choline ion interactions with DNA atoms explain unique stabilization of A-T base pairs in DNA duplexes: A microscopic view
-
Nakano, M., Tateishi-Karimata, H., Tanaka, S. and Sugimoto, N. (2014) Choline ion interactions with DNA atoms explain unique stabilization of A-T base pairs in DNA duplexes: a microscopic view. J. Phys. Chem. B, 118, 379-389.
-
(2014)
J. Phys. Chem. B
, vol.118
, pp. 379-389
-
-
Nakano, M.1
Tateishi-Karimata, H.2
Tanaka, S.3
Sugimoto, N.4
-
69
-
-
84896817753
-
MD and NMR analyses of choline and TMA binding to duplex DNA: On the origins of aberrant sequence-dependent stability by alkyl cations in aqueous and water-free solvents
-
Portella, G., Germann, M.W., Hud, N.V. and Orozco, M. (2014) MD and NMR analyses of choline and TMA binding to duplex DNA: on the origins of aberrant sequence-dependent stability by alkyl cations in aqueous and water-free solvents. J. Am. Chem. Soc., 136, 3075-3086.
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 3075-3086
-
-
Portella, G.1
Germann, M.W.2
Hud, N.V.3
Orozco, M.4
-
70
-
-
0015580506
-
Alteration of the relative stability of dA-dT and dG-dC base pairs in DNA
-
Melchior, W.B. Jr and Von Hippel, P.H. (1973) Alteration of the relative stability of dA-dT and dG-dC base pairs in DNA. Proc. Natl Acad. Sci. U.S.A., 70, 298-302.
-
(1973)
Proc. Natl Acad. Sci. U.S.A.
, vol.70
, pp. 298-302
-
-
Melchior Jr., W.B.1
Von Hippel, P.H.2
-
71
-
-
33847028397
-
Quantitative analysis of monovalent counterion binding to
-
random-sequence, double-stranded DNA using the replacement ion method
-
Stellwagen, E., Dong, Q. and Stellwagen, N.C. (2007) Quantitative analysis of monovalent counterion binding to random-sequence, double-stranded DNA using the replacement ion method. Biochemistry, 46, 2050-2058.
-
(2007)
Biochemistry
, vol.46
, pp. 2050-2058
-
-
Stellwagen, E.1
Dong, Q.2
Stellwagen, N.C.3
-
73
-
-
79551496454
-
DNA molecular solvation in neat ionic liquids
-
Cardoso, L. and Micaelo, N.M. (2011) DNA molecular solvation in neat ionic liquids. Chemphyschem, 12, 275-277.
-
(2011)
Chemphyschem
, vol.12
, pp. 275-277
-
-
Cardoso, L.1
Micaelo, N.M.2
-
74
-
-
8744225646
-
The exclusion of glycine betaine from anionic biopolymer surface: Why glycine betaine is an effective osmoprotectant but also a compatible solute
-
Felitsky, D.J., Cannon, J.G., Capp, M.W., Hong, J., Van Wynsberghe, A.W., Anderson, C.F. and Record, M.T. Jr (2004) The exclusion of glycine betaine from anionic biopolymer surface: why glycine betaine is an effective osmoprotectant but also a compatible solute. Biochemistry, 43, 14732-14743.
-
(2004)
Biochemistry
, vol.43
, pp. 14732-14743
-
-
Felitsky, D.J.1
Cannon, J.G.2
Capp, M.W.3
Hong, J.4
Van Wynsberghe, A.W.5
Anderson, C.F.6
Record Jr., M.T.7
-
75
-
-
83455186412
-
How ionic liquids can help to stabilize native proteins
-
Weingartner, H., Cabrele, C. and Herrmann, C. (2012) How ionic liquids can help to stabilize native proteins. Phys. Chem. Chem. Phys., 14, 415-426.
-
(2012)
Phys. Chem. Chem. Phys.
, vol.14
, pp. 415-426
-
-
Weingartner, H.1
Cabrele, C.2
Herrmann, C.3
-
76
-
-
84886240328
-
Recent progress in G-quadruplex DNA in deep eutectic solvent
-
Zhao, C. and Qu, X. (2013) Recent progress in G-quadruplex DNA in deep eutectic solvent. Methods, 64, 52-58.
-
(2013)
Methods
, vol.64
, pp. 52-58
-
-
Zhao, C.1
Qu, X.2
-
77
-
-
84879961628
-
Rapid dissolution of DNA in a novel bio-based ionic liquid with long-term structural and chemical stability: Successful recycling of the ionic liquid for reuse in the process
-
Mukesh, C., Mondal, D., Sharma, M. and Prasad, K. (2013) Rapid dissolution of DNA in a novel bio-based ionic liquid with long-term structural and chemical stability: successful recycling of the ionic liquid for reuse in the process. Chem. Commun. (Camb.), 49, 6849-6851.
-
(2013)
Chem. Commun. (Camb.)
, vol.49
, pp. 6849-6851
-
-
Mukesh, C.1
Mondal, D.2
Sharma, M.3
Prasad, K.4
-
78
-
-
84871398589
-
Groove binding mechanism of ionic liquids: A key factor in long-term stability of DNA in hydrated ionic liquids?
-
Chandran, A., Ghoshdastidar, D. and Senapati, S. (2012) Groove binding mechanism of ionic liquids: a key factor in long-term stability of DNA in hydrated ionic liquids? J. Am. Chem. Soc., 134, 20330-20339.
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 20330-20339
-
-
Chandran, A.1
Ghoshdastidar, D.2
Senapati, S.3
-
79
-
-
0036687239
-
Design of successive ion conduction paths in DNA films with ionic liquids
-
Nishimura, N. and Ohno, H. (2005) Design of successive ion conduction paths in DNA films with ionic liquids. J. Mater. Chem., 12, 2299-2304.
-
(2005)
J. Mater. Chem.
, vol.12
, pp. 2299-2304
-
-
Nishimura, N.1
Ohno, H.2
-
80
-
-
84867366937
-
Exploring the thermal stability of DNA-linked gold nanoparticles in ionic liquids and molecular solvents
-
Menhaj, Arsalan Beg, Smith, Brendan D. and Liu, Juewen (2012) Exploring the thermal stability of DNA-linked gold nanoparticles in ionic liquids and molecular solvents. Chem. Sci. 3, 3216-3220.
-
(2012)
Chem. Sci.
, vol.3
, pp. 3216-3220
-
-
Menhaj, A.B.1
Smith, B.D.2
Liu, J.3
-
81
-
-
84886929690
-
Sequence and solvent effects on telomeric DNA bimolecular G-quadruplex folding kinetics
-
Marchand, A., Ferreira, R., Tateishi-Karimata, H., Miyoshi, D., Sugimoto, N. and Gabelica, V. (2013) Sequence and solvent effects on telomeric DNA bimolecular G-quadruplex folding kinetics. J. Phys. Chem. B, 117, 12391-12401.
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 12391-12401
-
-
Marchand, A.1
Ferreira, R.2
Tateishi-Karimata, H.3
Miyoshi, D.4
Sugimoto, N.5
Gabelica, V.6
-
82
-
-
84876894268
-
Extraction of DNA staining dyes from DNA using hydrophobic ionic liquids
-
Khimji, I., Doan, K., Bruggeman, K., Huang, P.J., Vajha, P. and Liu, J. (2013) Extraction of DNA staining dyes from DNA using hydrophobic ionic liquids. Chem. Commun. (Camb.), 49, 4537-4539.
-
(2013)
Chem. Commun. (Camb.)
, vol.49
, pp. 4537-4539
-
-
Khimji, I.1
Doan, K.2
Bruggeman, K.3
Huang, P.J.4
Vajha, P.5
Liu, J.6
-
83
-
-
0034681955
-
Vapor pressure osmometry studies of osmolyte-protein interactions: Implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro
-
Courtenay, E.S., Capp, M.W., Anderson, C.F. and Record, M.T. Jr (2000) Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro. Biochemistry, 39, 4455-4471.
-
(2000)
Biochemistry
, vol.39
, pp. 4455-4471
-
-
Courtenay, E.S.1
Capp, M.W.2
Anderson, C.F.3
Record Jr., M.T.4
-
84
-
-
74949113912
-
Choline: An essential nutrient for public health
-
Zeisel, S.H. and da Costa, K.A. (2009) Choline: an essential nutrient for public health. Nutr. Rev., 67, 615-623.
-
(2009)
Nutr. Rev.
, vol.67
, pp. 615-623
-
-
Zeisel, S.H.1
Da Costa, K.A.2
-
85
-
-
79955864329
-
Choline and betaine in health and disease
-
Ueland, P.M. (2011) Choline and betaine in health and disease. J. Inherit. Metab. Dis., 34, 3-15.
-
(2011)
J. Inherit. Metab. Dis.
, vol.34
, pp. 3-15
-
-
Ueland, P.M.1
-
86
-
-
84866480357
-
Human telomere sequence DNA in water-free and high-viscosity solvents: G-quadruplex folding governed by Kramers rate theory
-
Lannan, F.M., Mamajanov, I. and Hud, N.V. (2012) Human telomere sequence DNA in water-free and high-viscosity solvents: G-quadruplex folding governed by Kramers rate theory. J. Am. Chem. Soc., 134, 15324-15330.
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 15324-15330
-
-
Lannan, F.M.1
Mamajanov, I.2
Hud, N.V.3
-
87
-
-
79959509289
-
Structure of human telomeric DNA in crowded solution
-
Heddi, B. and Phan, A.T. (2011) Structure of human telomeric DNA in crowded solution. J. Am. Chem. Soc., 133, 9824-9833.
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 9824-9833
-
-
Heddi, B.1
Phan, A.T.2
-
88
-
-
78650109518
-
Hydration is a major determinant of the G-quadruplex stability and conformation of the human telomere 3′ sequence of d(AG3(TTAG3)3)
-
Miller, M.C., Buscaglia, R., Chaires, J.B., Lane, A.N. and Trent, J.O. (2010) Hydration is a major determinant of the G-quadruplex stability and conformation of the human telomere 3′ sequence of d(AG3(TTAG3)3). J. Am. Chem. Soc., 132, 17105-17107.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 17105-17107
-
-
Miller, M.C.1
Buscaglia, R.2
Chaires, J.B.3
Lane, A.N.4
Trent, J.O.5
-
89
-
-
34547275473
-
Brownian motion in a field of force and the diffusion model of chemical reactions
-
Kramers, H.A. (1940) Brownian motion in a field of force and the diffusion model of chemical reactions. Physica, 7, 284-304.
-
(1940)
Physica
, vol.7
, pp. 284-304
-
-
Kramers, H.A.1
-
90
-
-
44349171709
-
Molecular rotor measures viscosity of live cells via fluorescence lifetime imaging
-
Kuimova, M.K., Yahioglu, G., Levitt, J.A. and Suhling, K. (2008) Molecular rotor measures viscosity of live cells via fluorescence lifetime imaging. J. Am. Chem. Soc., 130, 6672-6673.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 6672-6673
-
-
Kuimova, M.K.1
Yahioglu, G.2
Levitt, J.A.3
Suhling, K.4
-
91
-
-
0141765878
-
Electrochemical DNA sensors
-
Drummond, T.G., Hill, M.G. and Barton, J.K. (2003) Electrochemical DNA sensors. Nat. Biotechnol., 21, 1192-1199.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 1192-1199
-
-
Drummond, T.G.1
Hill, M.G.2
Barton, J.K.3
-
92
-
-
78049372772
-
DNA-based nanostructures for molecular sensing
-
Lee, J.B., Campolongo, M.J., Kahn, J.S., Roh, Y.H., Hartman, M.R. and Luo, D. (2010) DNA-based nanostructures for molecular sensing. Nanoscale, 2, 188-197.
-
(2010)
Nanoscale
, vol.2
, pp. 188-197
-
-
Lee, J.B.1
Campolongo, M.J.2
Kahn, J.S.3
Roh, Y.H.4
Hartman, M.R.5
Luo, D.6
-
93
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., Shalon, D., Davis, R.W. and Brown, P.O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
94
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart, D.J., Dong, H., Byrne, M.C., Follettie, M.T., Gallo, M.V., Chee, M.S., Mittmann, M., Wang, C., Kobayashi, M., Horton, H. et al. (1996) Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol., 14, 1675-1680.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
-
95
-
-
0037065663
-
Hybridization of DNA and PNA molecular beacons to single-stranded and double-stranded DNA targets
-
Kuhn, H., Demidov, V.V., Coull, J.M., Fiandaca, M.J., Gildea, B.D. and Frank-Kamenetskii, M.D. (2002) Hybridization of DNA and PNA molecular beacons to single-stranded and double-stranded DNA targets. J. Am. Chem. Soc., 124, 1097-1103.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 1097-1103
-
-
Kuhn, H.1
Demidov, V.V.2
Coull, J.M.3
Fiandaca, M.J.4
Gildea, B.D.5
Frank-Kamenetskii, M.D.6
-
96
-
-
18744402495
-
Anthryl-substituted heterocycles as acid-sensitive fluorescence probes
-
Ihmels, H., Meiswinkel, A., Mohrschladt, C.J., Otto, D., Waidelich, M., Towler, M., White, R., Albrecht, M. and Schnurpfeil, A. (2005) Anthryl-substituted heterocycles as acid-sensitive fluorescence probes. J. Org. Chem., 70, 3929-3938.
-
(2005)
J. Org. Chem.
, vol.70
, pp. 3929-3938
-
-
Ihmels, H.1
Meiswinkel, A.2
Mohrschladt, C.J.3
Otto, D.4
Waidelich, M.5
Towler, M.6
White, R.7
Albrecht, M.8
Schnurpfeil, A.9
-
97
-
-
34548827024
-
Harnessing DNA intercalation
-
Persil, O. and Hud, N.V. (2007) Harnessing DNA intercalation. Trends Biotechnol., 25, 433-436.
-
(2007)
Trends Biotechnol.
, vol.25
, pp. 433-436
-
-
Persil, O.1
Hud, N.V.2
|