-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. Journal of Molecular Biology 1990, 215:403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0033485460
-
DNA-binding proteins and evolution of transcription regulation in the Archaea
-
Aravind L., Koonin E.V. DNA-binding proteins and evolution of transcription regulation in the Archaea. Nucleic Acids Research 1999, 27:4658-4670.
-
(1999)
Nucleic Acids Research
, vol.27
, pp. 4658-4670
-
-
Aravind, L.1
Koonin, E.V.2
-
3
-
-
0034077514
-
Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors
-
Baliga N.S., Goo Y.A., Ng W.V., Hood L., Daniels C.J., DasSarma S. Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors. Molecular Microbiology 2000, 36:1184-1185.
-
(2000)
Molecular Microbiology
, vol.36
, pp. 1184-1185
-
-
Baliga, N.S.1
Goo, Y.A.2
Ng, W.V.3
Hood, L.4
Daniels, C.J.5
DasSarma, S.6
-
4
-
-
0033823109
-
The orientation of DNA in an archaeal transcription initiation complex
-
Bartlett M.S., Thomm M., Geiduschek E.P. The orientation of DNA in an archaeal transcription initiation complex. Nature Structural Biology 2000, 7:782-785.
-
(2000)
Nature Structural Biology
, vol.7
, pp. 782-785
-
-
Bartlett, M.S.1
Thomm, M.2
Geiduschek, E.P.3
-
6
-
-
20344396840
-
Archaeal transcriptional regulation-Variation on a bacterial theme?
-
Bell S.D. Archaeal transcriptional regulation-Variation on a bacterial theme?. Trends in Microbiology 2005, 13:262-265.
-
(2005)
Trends in Microbiology
, vol.13
, pp. 262-265
-
-
Bell, S.D.1
-
7
-
-
0033400812
-
Transcriptional regulation of an archaeal operon in vivo and in vitro
-
Bell S.D., Cairns S.S., Robson R.L., Jackson S.P. Transcriptional regulation of an archaeal operon in vivo and in vitro. Molecular Cell 1999, 4:971-982.
-
(1999)
Molecular Cell
, vol.4
, pp. 971-982
-
-
Bell, S.D.1
Cairns, S.S.2
Robson, R.L.3
Jackson, S.P.4
-
8
-
-
0033598809
-
Orientation of the transcription preinitiation complex in archaea
-
Bell S.D., Kosa P.L., Sigler P.B., Jackson S.P. Orientation of the transcription preinitiation complex in archaea. Proceedings of the National Academy of Sciences of the United States of America 1999, 96:13662-13667.
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, pp. 13662-13667
-
-
Bell, S.D.1
Kosa, P.L.2
Sigler, P.B.3
Jackson, S.P.4
-
9
-
-
49749085907
-
The order Thermococcales
-
Springer, New York, M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.)
-
Bertoldo C., Antranikian G. The order Thermococcales. The prokaryotes 2006, 69-81. Springer, New York. M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.).
-
(2006)
The prokaryotes
, pp. 69-81
-
-
Bertoldo, C.1
Antranikian, G.2
-
10
-
-
0034796321
-
Archaeal catabolite repression: A gene regulatory paradigm
-
Bini E., Blum P. Archaeal catabolite repression: A gene regulatory paradigm. Advances in Applied Microbiology 2001, 50:339-366.
-
(2001)
Advances in Applied Microbiology
, vol.50
, pp. 339-366
-
-
Bini, E.1
Blum, P.2
-
11
-
-
70350150787
-
Regulation of putative methyl-sulphide methyltransferases in Methanosarcina acetivorans C2A
-
Bose A., Kulkarni G., Metcalf W.W. Regulation of putative methyl-sulphide methyltransferases in Methanosarcina acetivorans C2A. Molecular Microbiology 2009, 74:227-238.
-
(2009)
Molecular Microbiology
, vol.74
, pp. 227-238
-
-
Bose, A.1
Kulkarni, G.2
Metcalf, W.W.3
-
12
-
-
37749010878
-
Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2A
-
Bose A., Metcalf W.W. Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2A. Molecular Microbiology 2007, 37:649-661.
-
(2007)
Molecular Microbiology
, vol.37
, pp. 649-661
-
-
Bose, A.1
Metcalf, W.W.2
-
13
-
-
0037119358
-
The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability
-
Brinkman A.B., Bell S.D., Lebbink R.J., de Vos W.M., van der Oost J. The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability. Journal of Biological Chemistry 2002, 277:29537-29549.
-
(2002)
Journal of Biological Chemistry
, vol.277
, pp. 29537-29549
-
-
Brinkman, A.B.1
Bell, S.D.2
Lebbink, R.J.3
de Vos, W.M.4
van der Oost, J.5
-
14
-
-
0038349269
-
The Lrp family of transcriptional regulators
-
Brinkman A.B., Ettema T.J., de Vos W.M., van der Oost J. The Lrp family of transcriptional regulators. Molecular Microbiology 2003, 48:287-294.
-
(2003)
Molecular Microbiology
, vol.48
, pp. 287-294
-
-
Brinkman, A.B.1
Ettema, T.J.2
de Vos, W.M.3
van der Oost, J.4
-
15
-
-
33745228417
-
The catalase and superoxide dismutase genes are transcriptionally up-regulated upon oxidative stress in the strictly anaerobic archaeon Methanosarcina barkeri
-
Brioukhanov A.L., Netrusov A.I., Eggen R.I.L. The catalase and superoxide dismutase genes are transcriptionally up-regulated upon oxidative stress in the strictly anaerobic archaeon Methanosarcina barkeri. Microbiology 2006, 152:1671-1677.
-
(2006)
Microbiology
, vol.152
, pp. 1671-1677
-
-
Brioukhanov, A.L.1
Netrusov, A.I.2
Eggen, R.I.L.3
-
16
-
-
79952613800
-
Genetic methods for Methanosarcina species
-
Academic Press, New York, (chapter 2), C.R. Amy, W.R. Stephen (Eds.)
-
Buan N., Kulkarni G., Metcalf W. Genetic methods for Methanosarcina species. Methods in enzymology 2011, 23-42. Academic Press, New York, (chapter 2). C.R. Amy, W.R. Stephen (Eds.).
-
(2011)
Methods in enzymology
, pp. 23-42
-
-
Buan, N.1
Kulkarni, G.2
Metcalf, W.3
-
17
-
-
78149337906
-
Preliminary crystallography confirms that the archaeal DNA-binding and tryptophan-sensing regulator TrpY is a dimer
-
Cafasso J., Manjasetty B.A., Karr E.A., Sandman K., Chance M.R., Reeve J.N. Preliminary crystallography confirms that the archaeal DNA-binding and tryptophan-sensing regulator TrpY is a dimer. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications 2010, 66:1493-1495.
-
(2010)
Acta Crystallographica. Section F, Structural Biology and Crystallization Communications
, vol.66
, pp. 1493-1495
-
-
Cafasso, J.1
Manjasetty, B.A.2
Karr, E.A.3
Sandman, K.4
Chance, M.R.5
Reeve, J.N.6
-
20
-
-
0032899732
-
Function and regulation of glnA in the methanogenic archaeon Methanococcus maripaludis
-
Cohen-Kupiec R., Marx C.J., Leigh J.A. Function and regulation of glnA in the methanogenic archaeon Methanococcus maripaludis. Journal of Bacteriology 1999, 181:256-261.
-
(1999)
Journal of Bacteriology
, vol.181
, pp. 256-261
-
-
Cohen-Kupiec, R.1
Marx, C.J.2
Leigh, J.A.3
-
21
-
-
37049013315
-
Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: Coordinate action of TbpD and TfbA
-
Coker J.A., DasSarma S. Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: Coordinate action of TbpD and TfbA. BMC Genetics 2007, 8:61.
-
(2007)
BMC Genetics
, vol.8
, pp. 61
-
-
Coker, J.A.1
DasSarma, S.2
-
22
-
-
79952859902
-
C68 from the Sulfolobus islandicus plasmid-virus pSSVx is a novel member of the AbrB-like transcription factor family
-
Contursi P., D'Ambrosio K., Pirone L., Pedone E., Aucelli T., She Q., et al. C68 from the Sulfolobus islandicus plasmid-virus pSSVx is a novel member of the AbrB-like transcription factor family. Biochemical Journal 2011, 435:157-166.
-
(2011)
Biochemical Journal
, vol.435
, pp. 157-166
-
-
Contursi, P.1
D'Ambrosio, K.2
Pirone, L.3
Pedone, E.4
Aucelli, T.5
She, Q.6
-
23
-
-
84886288654
-
Host and viral transcriptional regulators in Sulfolobus: An overview
-
Contursi P., Fusco S., Limauro D., Fiorentino G. Host and viral transcriptional regulators in Sulfolobus: An overview. Extremophiles 2013, 17:881-895.
-
(2013)
Extremophiles
, vol.17
, pp. 881-895
-
-
Contursi, P.1
Fusco, S.2
Limauro, D.3
Fiorentino, G.4
-
25
-
-
0035476428
-
A role for rubredoxin in oxidative stress protection in Desulfovibrio vulgaris: Catalytic electron transfer to rubrerythrin and two-iron superoxide reductase
-
Coulter E.D., Kurtz D.M. A role for rubredoxin in oxidative stress protection in Desulfovibrio vulgaris: Catalytic electron transfer to rubrerythrin and two-iron superoxide reductase. Archives of Biochemistry and Biophysics 2001, 394:76-86.
-
(2001)
Archives of Biochemistry and Biophysics
, vol.394
, pp. 76-86
-
-
Coulter, E.D.1
Kurtz, D.M.2
-
26
-
-
34249820791
-
Spontaneous trpY mutants and mutational analysis of the TrpY archaeal transcription regulator
-
Čuboňovà L., Sandman K., Karr E.A., Cochran A.J., Reeve J.N. Spontaneous trpY mutants and mutational analysis of the TrpY archaeal transcription regulator. Journal of Bacteriology 2007, 189:4338-4342.
-
(2007)
Journal of Bacteriology
, vol.189
, pp. 4338-4342
-
-
Čuboňovà, L.1
Sandman, K.2
Karr, E.A.3
Cochran, A.J.4
Reeve, J.N.5
-
27
-
-
0032779428
-
Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro
-
Darcy T.J., Hausner W., Awery D.E., Edwards A.M., Thomm M., Reeve J.N. Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro. Journal of Bacteriology 1999, 181:4424-4429.
-
(1999)
Journal of Bacteriology
, vol.181
, pp. 4424-4429
-
-
Darcy, T.J.1
Hausner, W.2
Awery, D.E.3
Edwards, A.M.4
Thomm, M.5
Reeve, J.N.6
-
28
-
-
79551676570
-
Molecular basis of transcription initiation in Archaea
-
De Carlo S., Lin S.-C., Taatjes D.J., Hoenger A. Molecular basis of transcription initiation in Archaea. Transcription 2010, 1:103-111.
-
(2010)
Transcription
, vol.1
, pp. 103-111
-
-
De Carlo, S.1
Lin, S.-C.2
Taatjes, D.J.3
Hoenger, A.4
-
29
-
-
79953161982
-
Characterization of the specific interaction between archaeal FHA domain-containing protein and the promoter of a flagellar-like gene-cluster and its regulation by phosphorylation
-
Duan X., He Z.G. Characterization of the specific interaction between archaeal FHA domain-containing protein and the promoter of a flagellar-like gene-cluster and its regulation by phosphorylation. Biochemical and Biophysical Research Communications 2011, 407:242-247.
-
(2011)
Biochemical and Biophysical Research Communications
, vol.407
, pp. 242-247
-
-
Duan, X.1
He, Z.G.2
-
30
-
-
0034044849
-
Purification and characterization of Sa-Lrp, a DNA-binding protein from the extreme thermoacidophilic archaeon Sulfolobus acidocaldarius homologous to the bacterial global transcriptional regulator Lrp
-
Enoru-Eta J., Gigot D., Thia-Toong T.L., Glansdorff N., Charlier D. Purification and characterization of Sa-Lrp, a DNA-binding protein from the extreme thermoacidophilic archaeon Sulfolobus acidocaldarius homologous to the bacterial global transcriptional regulator Lrp. Journal of Bacteriology 2000, 182:3661-3672.
-
(2000)
Journal of Bacteriology
, vol.182
, pp. 3661-3672
-
-
Enoru-Eta, J.1
Gigot, D.2
Thia-Toong, T.L.3
Glansdorff, N.4
Charlier, D.5
-
31
-
-
33746048460
-
Molecular characterization of a conserved archaeal copper resistance (cop) gene cluster and its copper-responsive regulator in Sulfolobus solfataricus P2
-
Ettema T.J., Brinkman A.B., Lamers P.P., Kornet N.G., de Vos W.M., van der Oost J. Molecular characterization of a conserved archaeal copper resistance (cop) gene cluster and its copper-responsive regulator in Sulfolobus solfataricus P2. Microbiology 2006, 152:1969-1979.
-
(2006)
Microbiology
, vol.152
, pp. 1969-1979
-
-
Ettema, T.J.1
Brinkman, A.B.2
Lamers, P.P.3
Kornet, N.G.4
de Vos, W.M.5
van der Oost, J.6
-
32
-
-
0242418181
-
TRASH: A novel metal-binding domain predicted to be involved in heavy-metal sensing, trafficking and resistance
-
Ettema T.J., Huynen M.A., de Vos W.M., van der Oost J. TRASH: A novel metal-binding domain predicted to be involved in heavy-metal sensing, trafficking and resistance. Trends in Biochemical Sciences 2003, 28:170-173.
-
(2003)
Trends in Biochemical Sciences
, vol.28
, pp. 170-173
-
-
Ettema, T.J.1
Huynen, M.A.2
de Vos, W.M.3
van der Oost, J.4
-
33
-
-
34248399625
-
General transcription factor specified global regulation in Archaea
-
Facciotti M.T., Reiss D.J., Pan M., Kaur A., Vuthoori M., Bonneau R., et al. General transcription factor specified global regulation in Archaea. Proceedings of the National Academy of Sciences of the United States of America 2007, 104:4630-4635.
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, pp. 4630-4635
-
-
Facciotti, M.T.1
Reiss, D.J.2
Pan, M.3
Kaur, A.4
Vuthoori, M.5
Bonneau, R.6
-
34
-
-
84877340268
-
Tlys, a newly identified Sulfolobus spindle-shaped virus 1 transcript expressed in the lysogenic state, encodes a DNA-binding protein interacting at the promoters of the early genes
-
Fusco S., She Q., Bartolucci S., Contursi P. Tlys, a newly identified Sulfolobus spindle-shaped virus 1 transcript expressed in the lysogenic state, encodes a DNA-binding protein interacting at the promoters of the early genes. Journal of Virology 2013, 87:5926-5936.
-
(2013)
Journal of Virology
, vol.87
, pp. 5926-5936
-
-
Fusco, S.1
She, Q.2
Bartolucci, S.3
Contursi, P.4
-
35
-
-
0036225678
-
The Genome of M. acetivorans reveals extensive metabolic and physiological diversity
-
Galagan J.E., Nusbaum C., Roy A., Endrizzi M.G., Macdonald P., FitzHugh W., et al. The Genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Research 2002, 12:532-542.
-
(2002)
Genome Research
, vol.12
, pp. 532-542
-
-
Galagan, J.E.1
Nusbaum, C.2
Roy, A.3
Endrizzi, M.G.4
Macdonald, P.5
FitzHugh, W.6
-
36
-
-
47549110972
-
Carbon catabolite repression in bacteria: Many ways to make the most out of nutrients
-
Gorke B., Stulke J. Carbon catabolite repression in bacteria: Many ways to make the most out of nutrients. Nature Reviews. Microbiology 2008, 6:613-624.
-
(2008)
Nature Reviews. Microbiology
, vol.6
, pp. 613-624
-
-
Gorke, B.1
Stulke, J.2
-
37
-
-
79959298162
-
Recent advances in the understanding of archaeal transcription
-
Grohmann D., Werner F. Recent advances in the understanding of archaeal transcription. Current Opinion in Microbiology 2011, 14:328-334.
-
(2011)
Current Opinion in Microbiology
, vol.14
, pp. 328-334
-
-
Grohmann, D.1
Werner, F.2
-
38
-
-
84872253945
-
Solution sructure of an archaeal DNA binding protein with an eukaryotic zinc finger fold
-
Guillière F., Danioux C., Jaubert C., Desnoues N., Delepierre M., Prangishvili D., et al. Solution sructure of an archaeal DNA binding protein with an eukaryotic zinc finger fold. PLoS ONE 2013, 8:e52908.
-
(2013)
PLoS ONE
, vol.8
-
-
Guillière, F.1
Danioux, C.2
Jaubert, C.3
Desnoues, N.4
Delepierre, M.5
Prangishvili, D.6
-
39
-
-
69249132878
-
Structure, function, and targets of the transcriptional regulator SvtR from the hyperthermophilic archaeal virus SIRV1
-
Guilliere F., Peixeiro N., Kessler A., Raynal B., Desnoues N., Keller J., et al. Structure, function, and targets of the transcriptional regulator SvtR from the hyperthermophilic archaeal virus SIRV1. Journal of Biological Chemistry 2009, 284:22222-22237.
-
(2009)
Journal of Biological Chemistry
, vol.284
, pp. 22222-22237
-
-
Guilliere, F.1
Peixeiro, N.2
Kessler, A.3
Raynal, B.4
Desnoues, N.5
Keller, J.6
-
40
-
-
0035069457
-
Iron and metal regulation in bacteria
-
Hantke K. Iron and metal regulation in bacteria. Current Opinion in Microbiology 2001, 4:172-177.
-
(2001)
Current Opinion in Microbiology
, vol.4
, pp. 172-177
-
-
Hantke, K.1
-
41
-
-
0033061353
-
Coordinate transcriptional control in the hyperthermophilic archaeon Sulfolobus solfataricus
-
Haseltine C.A., Montalvo-Rodriguez R., Bini E., Carl A., Blum P. Coordinate transcriptional control in the hyperthermophilic archaeon Sulfolobus solfataricus. Journal of Bacteriology 1999, 181:3920-3927.
-
(1999)
Journal of Bacteriology
, vol.181
, pp. 3920-3927
-
-
Haseltine, C.A.1
Montalvo-Rodriguez, R.2
Bini, E.3
Carl, A.4
Blum, P.5
-
42
-
-
0030064025
-
The glucose effect and regulation of alpha-amylase synthesis in the hyperthermophilic archaeon Sulfolobus solfataricus
-
Haseltine C.A., Rolfsmeier M., Blum P. The glucose effect and regulation of alpha-amylase synthesis in the hyperthermophilic archaeon Sulfolobus solfataricus. Journal of Bacteriology 1996, 178:945-950.
-
(1996)
Journal of Bacteriology
, vol.178
, pp. 945-950
-
-
Haseltine, C.A.1
Rolfsmeier, M.2
Blum, P.3
-
43
-
-
34547405862
-
Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea
-
Hendrickson E.L., Haydock A.K., Moore B.C., Whitman W.B., Leigh J.A. Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea. Proceedings of the National Academy of Sciences of the United States of America 2007, 104:8930-8934.
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, pp. 8930-8934
-
-
Hendrickson, E.L.1
Haydock, A.K.2
Moore, B.C.3
Whitman, W.B.4
Leigh, J.A.5
-
44
-
-
4944254822
-
Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis
-
Hendrickson E.L., Kaul R., Zhou Y., Bovee D., Chapman P., Chung J., et al. Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis. Journal of Bacteriology 2004, 186:6956-6969.
-
(2004)
Journal of Bacteriology
, vol.186
, pp. 6956-6969
-
-
Hendrickson, E.L.1
Kaul, R.2
Zhou, Y.3
Bovee, D.4
Chapman, P.5
Chung, J.6
-
45
-
-
40449095396
-
Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate
-
Hendrickson E.L., Liu Y., Rosas-Sandoval G., Porat I., Soll D., Whitman W.B., et al. Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate. Journal of Bacteriology 2008, 190:2198-2205.
-
(2008)
Journal of Bacteriology
, vol.190
, pp. 2198-2205
-
-
Hendrickson, E.L.1
Liu, Y.2
Rosas-Sandoval, G.3
Porat, I.4
Soll, D.5
Whitman, W.B.6
-
46
-
-
0031715110
-
SirR, a novel iron-dependent repressor in Staphylococcus epidermidis
-
Hill P., Cockayne A., Landers P., Morrissey J., Sims C., Williams P. SirR, a novel iron-dependent repressor in Staphylococcus epidermidis. Infection and Immunity 1998, 66:4123-4129.
-
(1998)
Infection and Immunity
, vol.66
, pp. 4123-4129
-
-
Hill, P.1
Cockayne, A.2
Landers, P.3
Morrissey, J.4
Sims, C.5
Williams, P.6
-
47
-
-
39149142997
-
The X-ray crystal structure of RNA polymerase from Archaea
-
Hirata A., Klein B.J., Murakami K.S. The X-ray crystal structure of RNA polymerase from Archaea. Nature 2008, 451:851-854.
-
(2008)
Nature
, vol.451
, pp. 851-854
-
-
Hirata, A.1
Klein, B.J.2
Murakami, K.S.3
-
48
-
-
4644342125
-
The role of cis-acting sequences governing catabolite repression control of lacS expression in the archaeon Sulfolobus solfataricus
-
Hoang V., Bini E., Dixit V., Drozda M., Blum P. The role of cis-acting sequences governing catabolite repression control of lacS expression in the archaeon Sulfolobus solfataricus. Genetics 2004, 167:1563-1572.
-
(2004)
Genetics
, vol.167
, pp. 1563-1572
-
-
Hoang, V.1
Bini, E.2
Dixit, V.3
Drozda, M.4
Blum, P.5
-
49
-
-
0031664705
-
The formylmethanofuran dehydrogenase isoenzymes in Methaobacterium wolfei and Methanobacterium thermoautotrophicum: Induction of the molybdenum isoenzyme by molybdate and constitutive synthesis of the tungsten isoenzyme
-
Hochheimer A., Hedderich R., Thauer R.K. The formylmethanofuran dehydrogenase isoenzymes in Methaobacterium wolfei and Methanobacterium thermoautotrophicum: Induction of the molybdenum isoenzyme by molybdate and constitutive synthesis of the tungsten isoenzyme. Archives of Microbiology 1998, 170:389-393.
-
(1998)
Archives of Microbiology
, vol.170
, pp. 389-393
-
-
Hochheimer, A.1
Hedderich, R.2
Thauer, R.K.3
-
50
-
-
0032956998
-
The DNA binding protein Tfx from Methanobacterium thermoautotrophicum: Structure, DNA binding properties and transcriptional regulation
-
Hochheimer A., Hedderich R., Thauer R.K. The DNA binding protein Tfx from Methanobacterium thermoautotrophicum: Structure, DNA binding properties and transcriptional regulation. Molecular Microbiology 1999, 31:641-650.
-
(1999)
Molecular Microbiology
, vol.31
, pp. 641-650
-
-
Hochheimer, A.1
Hedderich, R.2
Thauer, R.K.3
-
51
-
-
0029989411
-
The molybdenum formylmethanofuran dehydrogenase operon and the tungsten formylmethanofuran dehydrogenase operon from Methanobacterium thermoautotrophicum: Structures and transcriptional regulation
-
Hochheimer A., Linder D., Thauer R.K., Hedderich R. The molybdenum formylmethanofuran dehydrogenase operon and the tungsten formylmethanofuran dehydrogenase operon from Methanobacterium thermoautotrophicum: Structures and transcriptional regulation. European Journal of Biochemistry 1996, 242:156-162.
-
(1996)
European Journal of Biochemistry
, vol.242
, pp. 156-162
-
-
Hochheimer, A.1
Linder, D.2
Thauer, R.K.3
Hedderich, R.4
-
52
-
-
0029583885
-
The tungsten formylmethanofuran dehydrogenase from Methanobacterium thermoautotrophicum contains sequence motifs characteristic for enzymes containing molybdopterin dinucleotide
-
Hochheimer A., Schmitz R.A., Thauer R.K., Hedderich R. The tungsten formylmethanofuran dehydrogenase from Methanobacterium thermoautotrophicum contains sequence motifs characteristic for enzymes containing molybdopterin dinucleotide. European Journal of Biochemistry 1995, 234:910-920.
-
(1995)
European Journal of Biochemistry
, vol.234
, pp. 910-920
-
-
Hochheimer, A.1
Schmitz, R.A.2
Thauer, R.K.3
Hedderich, R.4
-
53
-
-
3142767630
-
GvpE- and GvpD-mediated transcription regulation of the p-gvp genes encoding gas vesicles in Halobacterium salinarum
-
Hofacker A., Schmitz K.M., Cichonczyk A., Sartorius-Neef S., Pfeifer F. GvpE- and GvpD-mediated transcription regulation of the p-gvp genes encoding gas vesicles in Halobacterium salinarum. Microbiology 2004, 150:1829-1838.
-
(2004)
Microbiology
, vol.150
, pp. 1829-1838
-
-
Hofacker, A.1
Schmitz, K.M.2
Cichonczyk, A.3
Sartorius-Neef, S.4
Pfeifer, F.5
-
54
-
-
84877602025
-
Assessment of the oxidant tolerance of Methanosarcina acetivorans
-
Horne A.J., Lessner D.J. Assessment of the oxidant tolerance of Methanosarcina acetivorans. FEMS Microbiology Letters 2013, 343:13-19.
-
(2013)
FEMS Microbiology Letters
, vol.343
, pp. 13-19
-
-
Horne, A.J.1
Lessner, D.J.2
-
55
-
-
84880125786
-
Redox-sensitive DNA binding by homodimeric Methanosarcina acetivorans MsvR is modulated by cysteine residues
-
Isom C.E., Turner J.L., Lessner D.J., Karr E.A. Redox-sensitive DNA binding by homodimeric Methanosarcina acetivorans MsvR is modulated by cysteine residues. BMC Microbiology 2013, 13:163.
-
(2013)
BMC Microbiology
, vol.13
, pp. 163
-
-
Isom, C.E.1
Turner, J.L.2
Lessner, D.J.3
Karr, E.A.4
-
56
-
-
84862754646
-
The archaellum: An old motility structure with a new name
-
Jarrell K.F., Albers S.V. The archaellum: An old motility structure with a new name. Trends in Microbiology 2012, 20:307-312.
-
(2012)
Trends in Microbiology
, vol.20
, pp. 307-312
-
-
Jarrell, K.F.1
Albers, S.V.2
-
57
-
-
84893519174
-
Expression of a bacterial catalase in a strictly anaerobic methanogen significantly increases tolerance to hydrogen peroxide but not oxygen
-
Jennings M.E., Schaff C.W., Horne A.J., Lessner F.H., Lessner D.J. Expression of a bacterial catalase in a strictly anaerobic methanogen significantly increases tolerance to hydrogen peroxide but not oxygen. Microbiology 2014, 160:270-278.
-
(2014)
Microbiology
, vol.160
, pp. 270-278
-
-
Jennings, M.E.1
Schaff, C.W.2
Horne, A.J.3
Lessner, F.H.4
Lessner, D.J.5
-
58
-
-
78951496018
-
Archaeal RNA polymerase and transcription regulation
-
Jun S.-H., Reichlen M.J., Tajiri M., Murakami K.S. Archaeal RNA polymerase and transcription regulation. Critical Reviews in Biochemistry and Molecular Biology 2011, 46:27-40.
-
(2011)
Critical Reviews in Biochemistry and Molecular Biology
, vol.46
, pp. 27-40
-
-
Jun, S.-H.1
Reichlen, M.J.2
Tajiri, M.3
Murakami, K.S.4
-
59
-
-
36348974664
-
A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes
-
Kanai T., Akerboom J., Takedomi S., van de Werken H.J., Blombach F., van der Oost J., et al. A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes. Journal of Biological Chemistry 2007, 282:33659-33670.
-
(2007)
Journal of Biological Chemistry
, vol.282
, pp. 33659-33670
-
-
Kanai, T.1
Akerboom, J.2
Takedomi, S.3
van de Werken, H.J.4
Blombach, F.5
van der Oost, J.6
-
60
-
-
78049425692
-
The methanogen-specific transcription factor MsvR regulates the fpaA-rlp-rub oxidative stress operon adjacent to msvR in Methanothermobacter thermautotrophicus
-
Karr E.A. The methanogen-specific transcription factor MsvR regulates the fpaA-rlp-rub oxidative stress operon adjacent to msvR in Methanothermobacter thermautotrophicus. Journal of Bacteriology 2010, 192:5914-5922.
-
(2010)
Journal of Bacteriology
, vol.192
, pp. 5914-5922
-
-
Karr, E.A.1
-
61
-
-
41549104237
-
TrpY regulation of trpB2 transcription in Methanothermobacter thermautotrophicus
-
Karr E.A., Sandman K., Lurz R., Reeve J.N. TrpY regulation of trpB2 transcription in Methanothermobacter thermautotrophicus. Journal of Bacteriology 2008, 190:2637-2641.
-
(2008)
Journal of Bacteriology
, vol.190
, pp. 2637-2641
-
-
Karr, E.A.1
Sandman, K.2
Lurz, R.3
Reeve, J.N.4
-
62
-
-
40949088993
-
Comparative transcriptome analysis of responses of Methanothermobacter thermautotrophicus to different environmental stimuli
-
Kato S., Kosaka T., Watanabe K. Comparative transcriptome analysis of responses of Methanothermobacter thermautotrophicus to different environmental stimuli. Environmental Microbiology 2008, 10:893-905.
-
(2008)
Environmental Microbiology
, vol.10
, pp. 893-905
-
-
Kato, S.1
Kosaka, T.2
Watanabe, K.3
-
63
-
-
33745619803
-
A systems view of haloarchaeal strategies to withstand stress from transition metals
-
Kaur A., Pan M., Meislin M., Facciotti M.T., El-Gewely R., Baliga N.S. A systems view of haloarchaeal strategies to withstand stress from transition metals. Genome Research 2006, 16:841-854.
-
(2006)
Genome Research
, vol.16
, pp. 841-854
-
-
Kaur, A.1
Pan, M.2
Meislin, M.3
Facciotti, M.T.4
El-Gewely, R.5
Baliga, N.S.6
-
64
-
-
13644264825
-
Oxidative stress response in an anaerobic hyperthermophilic archaeon: Presence of a functional peroxiredoxin in Pyrococcus horikoshii
-
Kawakami R., Sakuraba H., Kamohara S., Goda S., Kawarabayasi Y., Ohshima T. Oxidative stress response in an anaerobic hyperthermophilic archaeon: Presence of a functional peroxiredoxin in Pyrococcus horikoshii. Journal of Biochemistry (Tokyo) 2004, 136:541-547.
-
(2004)
Journal of Biochemistry (Tokyo)
, vol.136
, pp. 541-547
-
-
Kawakami, R.1
Sakuraba, H.2
Kamohara, S.3
Goda, S.4
Kawarabayasi, Y.5
Ohshima, T.6
-
65
-
-
77749297959
-
Genome-wide identification of targets for the archaeal heat shock regulator Phr by cell-free transcription of genomic DNA
-
Keese A.M., Schut G.J., Ouhammouch M., Adams M.W.W., Thomm M. Genome-wide identification of targets for the archaeal heat shock regulator Phr by cell-free transcription of genomic DNA. Journal of Bacteriology 2010, 192:1292-1298.
-
(2010)
Journal of Bacteriology
, vol.192
, pp. 1292-1298
-
-
Keese, A.M.1
Schut, G.J.2
Ouhammouch, M.3
Adams, M.W.W.4
Thomm, M.5
-
66
-
-
0031895257
-
The nif gene operon of the methanogenic archaeon Methanococcus maripaludis
-
Kessler P.S., Blank C., Leigh J.A. The nif gene operon of the methanogenic archaeon Methanococcus maripaludis. Journal of Bacteriology 1998, 180:1504-1511.
-
(1998)
Journal of Bacteriology
, vol.180
, pp. 1504-1511
-
-
Kessler, P.S.1
Blank, C.2
Leigh, J.A.3
-
67
-
-
0344289523
-
Genetics of nitrogen regulation in Methanococcus maripaludis
-
Kessler P.S., Leigh J.A. Genetics of nitrogen regulation in Methanococcus maripaludis. Genetics 1999, 152:1343-1351.
-
(1999)
Genetics
, vol.152
, pp. 1343-1351
-
-
Kessler, P.S.1
Leigh, J.A.2
-
68
-
-
33750141162
-
A novel archaeal regulator protein, Sta1, activates transcription from viral promoters
-
Kessler A., Sezonov G., Guijarro J.I., Desnoues N., Rose T., Delepierre M., et al. A novel archaeal regulator protein, Sta1, activates transcription from viral promoters. Nucleic Acids Research 2006, 34:4837-4845.
-
(2006)
Nucleic Acids Research
, vol.34
, pp. 4837-4845
-
-
Kessler, A.1
Sezonov, G.2
Guijarro, J.I.3
Desnoues, N.4
Rose, T.5
Delepierre, M.6
-
69
-
-
0036193380
-
Structure-function relationship and regulation of two Bacillus subtilis DNA-binding proteins, HBsu and AbrB
-
Klein W., Marahiel M. Structure-function relationship and regulation of two Bacillus subtilis DNA-binding proteins, HBsu and AbrB. Journal of Molecular Microbiology and Biotechnology 2002, 4:323-329.
-
(2002)
Journal of Molecular Microbiology and Biotechnology
, vol.4
, pp. 323-329
-
-
Klein, W.1
Marahiel, M.2
-
70
-
-
1542267826
-
The archaeal feast/famine regulatory protein: Potential roles of its assembly forms for regulating transcription
-
Koike H., Ishijima S.A., Clowney L., Suzuki M. The archaeal feast/famine regulatory protein: Potential roles of its assembly forms for regulating transcription. Proceedings of the National Academy of Sciences of the United States of America 2004, 101:2840-2845.
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, pp. 2840-2845
-
-
Koike, H.1
Ishijima, S.A.2
Clowney, L.3
Suzuki, M.4
-
71
-
-
0027236999
-
Transcriptional regulation by cAMP and its receptor protein
-
Kolb A., Busby S., Buc I.I., Garges S., Adhya S. Transcriptional regulation by cAMP and its receptor protein. Annual Review of Biochemistry 1993, 62:749-797.
-
(1993)
Annual Review of Biochemistry
, vol.62
, pp. 749-797
-
-
Kolb, A.1
Busby, S.2
Buc, I.I.3
Garges, S.4
Adhya, S.5
-
72
-
-
84881286971
-
The three-dimensional structure of TrmB, a transcriptional regulator of dual function in the hyperthermophilic archaeon Pyrococcus furiosus in complex with sucrose
-
Krug M., Lee S.J., Boos W., Diederichs K., Welte W. The three-dimensional structure of TrmB, a transcriptional regulator of dual function in the hyperthermophilic archaeon Pyrococcus furiosus in complex with sucrose. Protein Science 2013, 22:800-808.
-
(2013)
Protein Science
, vol.22
, pp. 800-808
-
-
Krug, M.1
Lee, S.J.2
Boos, W.3
Diederichs, K.4
Welte, W.5
-
73
-
-
33744964881
-
Crystal structure of the sugar binding domain of the archaeal transcriptional regulator TrmB
-
Krug M., Lee S.J., Diederichs K., Boos W., Welte W. Crystal structure of the sugar binding domain of the archaeal transcriptional regulator TrmB. Journal of Biological Chemistry 2006, 281:10976-10982.
-
(2006)
Journal of Biological Chemistry
, vol.281
, pp. 10976-10982
-
-
Krug, M.1
Lee, S.J.2
Diederichs, K.3
Boos, W.4
Welte, W.5
-
74
-
-
0032546745
-
The transcriptional activator GvpE for the halobacterial gas vesicle genes resembles a basic region leucing-zipper regulatory protein
-
Kruger K., Hermann T., Armbruster V., Pfeifer F. The transcriptional activator GvpE for the halobacterial gas vesicle genes resembles a basic region leucing-zipper regulatory protein. Journal of Molecular Biology 1998, 279:761-771.
-
(1998)
Journal of Molecular Biology
, vol.279
, pp. 761-771
-
-
Kruger, K.1
Hermann, T.2
Armbruster, V.3
Pfeifer, F.4
-
75
-
-
0030816276
-
Characterization of two heat shock genes from Haloferax volcanii: A model system for transcription regulation in the Archaea
-
Kuo Y., Thompson D., St Jean A., Charlebois R.L., Daniel C. Characterization of two heat shock genes from Haloferax volcanii: A model system for transcription regulation in the Archaea. Journal of Bacteriology 1997, 179:6318-6324.
-
(1997)
Journal of Bacteriology
, vol.179
, pp. 6318-6324
-
-
Kuo, Y.1
Thompson, D.2
St Jean, A.3
Charlebois, R.L.4
Daniel, C.5
-
76
-
-
38349128793
-
Structure of an archaeal RNA polymerase
-
Kusser A.G., Bertero M.G., Naji S., Becker T., Thomm M., Beckmann R., et al. Structure of an archaeal RNA polymerase. Journal of Molecular Biology 2008, 376:303-307.
-
(2008)
Journal of Molecular Biology
, vol.376
, pp. 303-307
-
-
Kusser, A.G.1
Bertero, M.G.2
Naji, S.3
Becker, T.4
Thomm, M.5
Beckmann, R.6
-
77
-
-
84875590805
-
The one-component system ArnR: A membrane-bound activator of the crenarchaeal archaellum
-
Lassak K., Peeters E., Wróbel S., Albers S.-V. The one-component system ArnR: A membrane-bound activator of the crenarchaeal archaellum. Molecular Microbiology 2013, 88:125-139.
-
(2013)
Molecular Microbiology
, vol.88
, pp. 125-139
-
-
Lassak, K.1
Peeters, E.2
Wróbel, S.3
Albers, S.-V.4
-
78
-
-
0037428467
-
TrmB, a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter from the hyperthermophilic archaeon Thermococcus litoralis
-
Lee S.J., Engelmann A., Horlacher R., Qu Q., Vierke G., Hebbeln C., et al. TrmB, a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter from the hyperthermophilic archaeon Thermococcus litoralis. Journal of Biological Chemistry 2003, 278:983-990.
-
(2003)
Journal of Biological Chemistry
, vol.278
, pp. 983-990
-
-
Lee, S.J.1
Engelmann, A.2
Horlacher, R.3
Qu, Q.4
Vierke, G.5
Hebbeln, C.6
-
79
-
-
25144461083
-
TrmB, a sugar sensing regulator of ABC transporter genes in Pyrococcus furiosus exhibits dual promoter specificity and is controlled by different inducers
-
Lee S.-J., Moulakakis C., Koning S.M., Hausner W., Thomm M., Boos W. TrmB, a sugar sensing regulator of ABC transporter genes in Pyrococcus furiosus exhibits dual promoter specificity and is controlled by different inducers. Molecular Microbiology 2005, 57:1797-1807.
-
(2005)
Molecular Microbiology
, vol.57
, pp. 1797-1807
-
-
Lee, S.-J.1
Moulakakis, C.2
Koning, S.M.3
Hausner, W.4
Thomm, M.5
Boos, W.6
-
80
-
-
49749153798
-
The role of TrmB and TrmB-like transcriptional regulators for sugar transport and metabolism in the hyperthermophilic archaeon Pyrococcus furiosus
-
Lee S.J., Surma M., Hausner W., Thomm M., Boos W. The role of TrmB and TrmB-like transcriptional regulators for sugar transport and metabolism in the hyperthermophilic archaeon Pyrococcus furiosus. Archives of Microbiology 2008, 190:247-256.
-
(2008)
Archives of Microbiology
, vol.190
, pp. 247-256
-
-
Lee, S.J.1
Surma, M.2
Hausner, W.3
Thomm, M.4
Boos, W.5
-
81
-
-
34250026433
-
Differential signal transduction via TrmB, a sugar sensing transcriptional repressor of Pyrococcus furiosus
-
Lee S., Surma M., Seitz S., Hausner W., Thomm M., Boos W. Differential signal transduction via TrmB, a sugar sensing transcriptional repressor of Pyrococcus furiosus. Molecular Microbiology 2007, 64:1499-1505.
-
(2007)
Molecular Microbiology
, vol.64
, pp. 1499-1505
-
-
Lee, S.1
Surma, M.2
Seitz, S.3
Hausner, W.4
Thomm, M.5
Boos, W.6
-
82
-
-
34447328994
-
Characterization of the TrmB-like protein, PF0124, a TGM-recognizing global transcriptional regulator of the hyperthermophilic archaeon Pyrococcus furiosus
-
Lee S.J., Surma M., Seitz S., Hausner W., Thomm M., Boos W. Characterization of the TrmB-like protein, PF0124, a TGM-recognizing global transcriptional regulator of the hyperthermophilic archaeon Pyrococcus furiosus. Molecular Microbiology 2007, 65:305-318.
-
(2007)
Molecular Microbiology
, vol.65
, pp. 305-318
-
-
Lee, S.J.1
Surma, M.2
Seitz, S.3
Hausner, W.4
Thomm, M.5
Boos, W.6
-
83
-
-
79958073627
-
Model organisms for genetics in the domain Archaea: Methanogens, halophiles, Thermococcales and Sulfolobales
-
Leigh J.A., Albers S.V., Atomi H., Allers T. Model organisms for genetics in the domain Archaea: Methanogens, halophiles, Thermococcales and Sulfolobales. FEMS Microbiology Reviews 2011, 35:577-608.
-
(2011)
FEMS Microbiology Reviews
, vol.35
, pp. 577-608
-
-
Leigh, J.A.1
Albers, S.V.2
Atomi, H.3
Allers, T.4
-
84
-
-
84879088130
-
Allostery and the lac operon
-
Lewis M. Allostery and the lac operon. Journal of Molecular Biology 2013, 425:2309-2316.
-
(2013)
Journal of Molecular Biology
, vol.425
, pp. 2309-2316
-
-
Lewis, M.1
-
85
-
-
33847369414
-
Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol
-
Li L., Li Q., Rohlin L., Kim U., Salmon K., Rejtar T., et al. Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol. Journal of Proteome Research 2006, 6:759-771.
-
(2006)
Journal of Proteome Research
, vol.6
, pp. 759-771
-
-
Li, L.1
Li, Q.2
Rohlin, L.3
Kim, U.4
Salmon, K.5
Rejtar, T.6
-
86
-
-
34249023906
-
Diverse homologues of the archaeal repressor NrpR function similarly in nitrogen regulation
-
Lie T.J., Dodsworth J.A., Nickle D.C., Leigh J.A. Diverse homologues of the archaeal repressor NrpR function similarly in nitrogen regulation. FEMS Microbiology Letters 2007, 271:281-288.
-
(2007)
FEMS Microbiology Letters
, vol.271
, pp. 281-288
-
-
Lie, T.J.1
Dodsworth, J.A.2
Nickle, D.C.3
Leigh, J.A.4
-
87
-
-
0037221867
-
A novel repressor of nif and glnA expression in the methanogenic archaeon Methanococcus maripaludis
-
Lie T.J., Leigh J.A. A novel repressor of nif and glnA expression in the methanogenic archaeon Methanococcus maripaludis. Molecular Microbiology 2003, 47:235-246.
-
(2003)
Molecular Microbiology
, vol.47
, pp. 235-246
-
-
Lie, T.J.1
Leigh, J.A.2
-
88
-
-
35448939174
-
Genetic screen for regulatory mutations in Methanococcus maripaludis and its use in identification of induction-deficient mutants of the euryarchaeal repressor NrpR
-
Lie T.J., Leigh J.A. Genetic screen for regulatory mutations in Methanococcus maripaludis and its use in identification of induction-deficient mutants of the euryarchaeal repressor NrpR. Applied and Environmental Microbiology 2007, 73:6595-6600.
-
(2007)
Applied and Environmental Microbiology
, vol.73
, pp. 6595-6600
-
-
Lie, T.J.1
Leigh, J.A.2
-
89
-
-
14044255851
-
Regulation of nif expression in Methanococcus maripaludis: Roles of the euryarchaeal repressor NrpR, 2-oxoglutarate, and two operators
-
Lie T.J., Wood G.E., Leigh J.A. Regulation of nif expression in Methanococcus maripaludis: Roles of the euryarchaeal repressor NrpR, 2-oxoglutarate, and two operators. Journal of Biological Chemistry 2005, 280:5236-5241.
-
(2005)
Journal of Biological Chemistry
, vol.280
, pp. 5236-5241
-
-
Lie, T.J.1
Wood, G.E.2
Leigh, J.A.3
-
90
-
-
58149301541
-
SurR: A transcriptional activator and repressor controlling hydrogen and elemental sulphur metabolism in Pyrococcus furiosus
-
Lipscomb G.L., Annette M.K., Darin M.C., Gerrit J.S., Michael T., Michael W.W.A., et al. SurR: A transcriptional activator and repressor controlling hydrogen and elemental sulphur metabolism in Pyrococcus furiosus. Molecular Microbiology 2009, 71:332-349.
-
(2009)
Molecular Microbiology
, vol.71
, pp. 332-349
-
-
Lipscomb, G.L.1
Annette, M.K.2
Darin, M.C.3
Gerrit, J.S.4
Michael, T.5
Michael, W.W.A.6
-
91
-
-
79953288906
-
Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: Construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases
-
Lipscomb G.L., Stirrett K., Schut G.J., Yang F., Jenney F.E., Scott R.A., et al. Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: Construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases. Applied and Environmental Microbiology 2011, 77:2232-2238.
-
(2011)
Applied and Environmental Microbiology
, vol.77
, pp. 2232-2238
-
-
Lipscomb, G.L.1
Stirrett, K.2
Schut, G.J.3
Yang, F.4
Jenney, F.E.5
Scott, R.A.6
-
92
-
-
84863581057
-
Identification and characterization of MtoA: A decaheme c-Type cytochrome of the neutrophilic Fe(II)-oxidizing bacterium Sideroxydans lithotrophicus ES-1
-
Liu J., Wang Z., Belchik S.M., Edwards M.J., Liu C., Kennedy D.W., et al. Identification and characterization of MtoA: A decaheme c-Type cytochrome of the neutrophilic Fe(II)-oxidizing bacterium Sideroxydans lithotrophicus ES-1. Frontiers in Microbiology 2012, 3:37.
-
(2012)
Frontiers in Microbiology
, vol.3
, pp. 37
-
-
Liu, J.1
Wang, Z.2
Belchik, S.M.3
Edwards, M.J.4
Liu, C.5
Kennedy, D.W.6
-
93
-
-
84858183302
-
Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae
-
Ljungdahl P.O., Daignan-Fornier B. Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae. Genetics 2012, 190:885-929.
-
(2012)
Genetics
, vol.190
, pp. 885-929
-
-
Ljungdahl, P.O.1
Daignan-Fornier, B.2
-
94
-
-
47649125318
-
Tuning gene expression to changing environments: From rapid responses to evolutionary adaptation
-
Lopez-Maury L., Marguerat S., Bahler J. Tuning gene expression to changing environments: From rapid responses to evolutionary adaptation. Nature Reviews. Genetics 2008, 9:583-593.
-
(2008)
Nature Reviews. Genetics
, vol.9
, pp. 583-593
-
-
Lopez-Maury, L.1
Marguerat, S.2
Bahler, J.3
-
95
-
-
65449146651
-
The Fur iron regulator-like protein is cryptic in the hyperthermophilic archaeonThermococcus kodakaraensis
-
Louvel H., Kanai T., Atomi H., Reeve J.N. The Fur iron regulator-like protein is cryptic in the hyperthermophilic archaeonThermococcus kodakaraensis. FEMS Microbiology Letters 2009, 295:117-128.
-
(2009)
FEMS Microbiology Letters
, vol.295
, pp. 117-128
-
-
Louvel, H.1
Kanai, T.2
Atomi, H.3
Reeve, J.N.4
-
96
-
-
44349164550
-
Dissection of the regulatory mechanism of a heat-shock responsive promoter in Haloarchaea: A new paradigm for general transcription factor directed archaeal gene regulation
-
Lu Q., Han J., Zhou L., Coker J.A., DasSarma P., DasSarma S., et al. Dissection of the regulatory mechanism of a heat-shock responsive promoter in Haloarchaea: A new paradigm for general transcription factor directed archaeal gene regulation. Nucleic Acids Research 2008, 36:3031-3042.
-
(2008)
Nucleic Acids Research
, vol.36
, pp. 3031-3042
-
-
Lu, Q.1
Han, J.2
Zhou, L.3
Coker, J.A.4
DasSarma, P.5
DasSarma, S.6
-
97
-
-
33749858625
-
Regulation of expression of the arabinose and glucose transporter genes in the thermophilic archaeon Sulfolobus solfataricus
-
Lubelska J.M., Jonuscheit M., Schleper C., Albers S.V., Driessen A.J. Regulation of expression of the arabinose and glucose transporter genes in the thermophilic archaeon Sulfolobus solfataricus. Extremophiles 2006, 10:383-391.
-
(2006)
Extremophiles
, vol.10
, pp. 383-391
-
-
Lubelska, J.M.1
Jonuscheit, M.2
Schleper, C.3
Albers, S.V.4
Driessen, A.J.5
-
98
-
-
0035190269
-
Rubrerythrin and rubredoxin oxidoreductase in Desulfovibrio vulgaris: A novel oxidative stress protection system
-
Lumppio H.L., Shenvi N.V., Summers A.O., Voordouw G., Kurtz D.M. Rubrerythrin and rubredoxin oxidoreductase in Desulfovibrio vulgaris: A novel oxidative stress protection system. Journal of Bacteriology 2001, 183:101-108.
-
(2001)
Journal of Bacteriology
, vol.183
, pp. 101-108
-
-
Lumppio, H.L.1
Shenvi, N.V.2
Summers, A.O.3
Voordouw, G.4
Kurtz, D.M.5
-
99
-
-
37549061018
-
Archaeal transcription: Function of an alternative transcription factor B from Pyrococcus furiosus
-
Micorescu M., Grunberg S., Franke A., Cramer P., Thomm M., Bartlett M. Archaeal transcription: Function of an alternative transcription factor B from Pyrococcus furiosus. Journal of Bacteriology 2008, 190:157-167.
-
(2008)
Journal of Bacteriology
, vol.190
, pp. 157-167
-
-
Micorescu, M.1
Grunberg, S.2
Franke, A.3
Cramer, P.4
Thomm, M.5
Bartlett, M.6
-
100
-
-
0031016808
-
Hydrogen regulation of growth, growth yields, and methane gene transcription in Methanobacterium thermoautotrophicum δH
-
Morgan R.M., Pihl T.D., Nölling J., Reeve J.N. Hydrogen regulation of growth, growth yields, and methane gene transcription in Methanobacterium thermoautotrophicum δH. Journal of Bacteriology 1997, 179:889-898.
-
(1997)
Journal of Bacteriology
, vol.179
, pp. 889-898
-
-
Morgan, R.M.1
Pihl, T.D.2
Nölling, J.3
Reeve, J.N.4
-
101
-
-
0032985667
-
An Lrp-like protein of the hyperthermophilic archaeon Sulfolobus solfataricus which binds to its own promoter
-
Napoli A., van der Oost J., Sensen C.W., Charlebois R.L., Rossi M., Ciaramella M. An Lrp-like protein of the hyperthermophilic archaeon Sulfolobus solfataricus which binds to its own promoter. Journal of Bacteriology 1999, 181:1474-1480.
-
(1999)
Journal of Bacteriology
, vol.181
, pp. 1474-1480
-
-
Napoli, A.1
van der Oost, J.2
Sensen, C.W.3
Charlebois, R.L.4
Rossi, M.5
Ciaramella, M.6
-
102
-
-
0029066823
-
Organization and growth phase-dependent transcription of methane genes in two regions of the Methnobacterium thermoautrophicum genome
-
Nölling J., Pihl T.D., Vriesema A., Reeve J.N. Organization and growth phase-dependent transcription of methane genes in two regions of the Methnobacterium thermoautrophicum genome. Journal of Bacteriology 1995, 177:2460-2468.
-
(1995)
Journal of Bacteriology
, vol.177
, pp. 2460-2468
-
-
Nölling, J.1
Pihl, T.D.2
Vriesema, A.3
Reeve, J.N.4
-
103
-
-
35148829988
-
A structural code for discriminating between transcription signals revealed by the feast/famine regulatory protein DM1 in complex with ligands
-
Okamura H., Yokoyama K., Koike H., Yamada M., Shimowasa A., Kabasawa M., et al. A structural code for discriminating between transcription signals revealed by the feast/famine regulatory protein DM1 in complex with ligands. Structure 2007, 15:1325-1338.
-
(2007)
Structure
, vol.15
, pp. 1325-1338
-
-
Okamura, H.1
Yokoyama, K.2
Koike, H.3
Yamada, M.4
Shimowasa, A.5
Kabasawa, M.6
-
104
-
-
34547531511
-
The order halobacteriales
-
Springer, New York, M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.)
-
Oren A. The order halobacteriales. The prokaryotes 2006, 113-164. Springer, New York. M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.).
-
(2006)
The prokaryotes
, pp. 113-164
-
-
Oren, A.1
-
105
-
-
0038303232
-
Activation of archaeal transcription by recruitment of the TATA-binding protein
-
Ouhammouch M., Dewhurst R.E., Hausner W., Thomm M., Geiduschek E.P. Activation of archaeal transcription by recruitment of the TATA-binding protein. Proceedings of the National Academy of Sciences of the United States of America 2003, 100:5097-5102.
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, pp. 5097-5102
-
-
Ouhammouch, M.1
Dewhurst, R.E.2
Hausner, W.3
Thomm, M.4
Geiduschek, E.P.5
-
106
-
-
0035863076
-
A thermostable platform for transcriptional regulation: The DNA-binding properties of two Lrp homologs from the hyperthermophilic archaeon Methanococcus jannaschii
-
Ouhammouch M., Geiduschek E.P. A thermostable platform for transcriptional regulation: The DNA-binding properties of two Lrp homologs from the hyperthermophilic archaeon Methanococcus jannaschii. EMBO Journal 2001, 20:146-155.
-
(2001)
EMBO Journal
, vol.20
, pp. 146-155
-
-
Ouhammouch, M.1
Geiduschek, E.P.2
-
107
-
-
66949142420
-
The crenarchaeal DNA damage-inducible transcription factor B paralogue TFB3 is a general activator of transcription
-
Paytubi S., White M.F. The crenarchaeal DNA damage-inducible transcription factor B paralogue TFB3 is a general activator of transcription. Molecular Microbiology 2009, 72:1487-1499.
-
(2009)
Molecular Microbiology
, vol.72
, pp. 1487-1499
-
-
Paytubi, S.1
White, M.F.2
-
108
-
-
79251535005
-
The Lrp family of transcription regulators in Archaea
-
Peeters E., Charlier D. The Lrp family of transcription regulators in Archaea. Archaea 2010, 2010:750457.
-
(2010)
Archaea
, vol.2010
, pp. 750457
-
-
Peeters, E.1
Charlier, D.2
-
110
-
-
84871952729
-
Structure and function of AvtR, a novel transcriptional regulator from a hyperthermophilic archaeal lipothrixvirus
-
Peixeiro N., Keller J., Collinet B., Leulliot N., Campanacci V., Cortez D., et al. Structure and function of AvtR, a novel transcriptional regulator from a hyperthermophilic archaeal lipothrixvirus. Journal of Virology 2013, 87:124-136.
-
(2013)
Journal of Virology
, vol.87
, pp. 124-136
-
-
Peixeiro, N.1
Keller, J.2
Collinet, B.3
Leulliot, N.4
Campanacci, V.5
Cortez, D.6
-
111
-
-
79551483054
-
Archaeal promoter architecture and mechanism of gene activation
-
Peng N., Ao X., Liang Y.X., She Q. Archaeal promoter architecture and mechanism of gene activation. Biochemical Society Transactions 2011, 39:99-103.
-
(2011)
Biochemical Society Transactions
, vol.39
, pp. 99-103
-
-
Peng, N.1
Ao, X.2
Liang, Y.X.3
She, Q.4
-
112
-
-
24944453275
-
Structural determinants of metal selectivity in prokaryotic metal-responsive transcriptional regulators
-
Pennella M.A., Giedroc D.P. Structural determinants of metal selectivity in prokaryotic metal-responsive transcriptional regulators. BioMetals 2005, 18:413-428.
-
(2005)
BioMetals
, vol.18
, pp. 413-428
-
-
Pennella, M.A.1
Giedroc, D.P.2
-
113
-
-
77952805130
-
Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin
-
Perez-Rueda E., Janga S.C. Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin. Molecular and Biological Evolution 2010, 27:1449-1459.
-
(2010)
Molecular and Biological Evolution
, vol.27
, pp. 1449-1459
-
-
Perez-Rueda, E.1
Janga, S.C.2
-
114
-
-
0036200936
-
Regulation of gas vesicle formation in halophilic archaea
-
Pfeifer F., Gregor D., Hofacker A., Plosser P., Zimmermann P. Regulation of gas vesicle formation in halophilic archaea. Journal of Molecular Microbiology and Biotechnology 2002, 4:175-181.
-
(2002)
Journal of Molecular Microbiology and Biotechnology
, vol.4
, pp. 175-181
-
-
Pfeifer, F.1
Gregor, D.2
Hofacker, A.3
Plosser, P.4
Zimmermann, P.5
-
115
-
-
0027993193
-
5-methyletetrahydromethanopterin: Coenzyme M methyltransferase in Methanobacterium thermoautotrophicum δH
-
5-methyletetrahydromethanopterin: Coenzyme M methyltransferase in Methanobacterium thermoautotrophicum δH. Journal of Bacteriology 1994, 176:6384-6391.
-
(1994)
Journal of Bacteriology
, vol.176
, pp. 6384-6391
-
-
Pihl, T.D.1
Sharma, S.2
Reeve, J.N.3
-
116
-
-
1642364959
-
Development of a markerless genetic exchange method for Methanosarcina acetivorans C2A and its use in construction of new genetic tools for methanogenic Archaea
-
Pritchett M.A., Zhang J.K., Metcalf W.W. Development of a markerless genetic exchange method for Methanosarcina acetivorans C2A and its use in construction of new genetic tools for methanogenic Archaea. Applied and Environmental Microbiology 2004, 70:1425-1433.
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 1425-1433
-
-
Pritchett, M.A.1
Zhang, J.K.2
Metcalf, W.W.3
-
117
-
-
78649355323
-
GlpR represses fructose and glucose metabolic enzymes at the level of transcription in the haloarchaeon Haloferax volcanii
-
Rawls K.S., Yacovone S.K., Maupin-Furlow J.A. GlpR represses fructose and glucose metabolic enzymes at the level of transcription in the haloarchaeon Haloferax volcanii. Journal of Bacteriology 2010, 192:6251-6260.
-
(2010)
Journal of Bacteriology
, vol.192
, pp. 6251-6260
-
-
Rawls, K.S.1
Yacovone, S.K.2
Maupin-Furlow, J.A.3
-
118
-
-
84865715263
-
MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivorans
-
e00189-12
-
Reichlen M.J., Vepachedu V.R., Murakami K.S., Ferry J.G. MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivorans. mBio 2012, 3:e00189-12.
-
(2012)
mBio
, vol.3
-
-
Reichlen, M.J.1
Vepachedu, V.R.2
Murakami, K.S.3
Ferry, J.G.4
-
119
-
-
84867092074
-
Regulation of archaella expression by the FHA and von Willebrand domain-containing proteins ArnA and ArnB in Sulfolobus acidocaldarius
-
Reimann J., Lassak K., Khadouma S., Ettema T.J., Yang N., Driessen A.J., et al. Regulation of archaella expression by the FHA and von Willebrand domain-containing proteins ArnA and ArnB in Sulfolobus acidocaldarius. Molecular Microbiology 2012, 86:24-36.
-
(2012)
Molecular Microbiology
, vol.86
, pp. 24-36
-
-
Reimann, J.1
Lassak, K.2
Khadouma, S.3
Ettema, T.J.4
Yang, N.5
Driessen, A.J.6
-
120
-
-
1642453651
-
Transcription factor B contacts promoter DNA near the transcription start site of the archaeal transcription initiation complex
-
Renfrow M.B., Naryshkin N., Lewis L.M., Chen H.T., Ebright R.H., Scott R.A. Transcription factor B contacts promoter DNA near the transcription start site of the archaeal transcription initiation complex. Journal of Biological Chemistry 2004, 279:2825-2831.
-
(2004)
Journal of Biological Chemistry
, vol.279
, pp. 2825-2831
-
-
Renfrow, M.B.1
Naryshkin, N.2
Lewis, L.M.3
Chen, H.T.4
Ebright, R.H.5
Scott, R.A.6
-
121
-
-
24344482874
-
Heat shock response of Archaeoglobus fulgidus
-
Rohlin L., Trent J.D., Salmon K., Kim U., Gunsalus R.P., Liao J.C. Heat shock response of Archaeoglobus fulgidus. Journal of Bacteriology 2005, 187:6046-6057.
-
(2005)
Journal of Bacteriology
, vol.187
, pp. 6046-6057
-
-
Rohlin, L.1
Trent, J.D.2
Salmon, K.3
Kim, U.4
Gunsalus, R.P.5
Liao, J.C.6
-
123
-
-
33847118046
-
TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro
-
Santangelo T.J., Čuboňová L., James C.L., Reeve J.N. TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro. Journal of Molecular Biology 2007, 367:344-357.
-
(2007)
Journal of Molecular Biology
, vol.367
, pp. 344-357
-
-
Santangelo, T.J.1
Čuboňová, L.2
James, C.L.3
Reeve, J.N.4
-
124
-
-
44249097297
-
Shuttle vector expression in Thermococcus kodakaraensis: Contributions of cis elements to protein synthesis in a hyperthermophilic archaeon
-
Santangelo T.J., Cubonova L.u., Reeve J.N. Shuttle vector expression in Thermococcus kodakaraensis: Contributions of cis elements to protein synthesis in a hyperthermophilic archaeon. Applied and Environmental Microbiology 2008, 74:3099-3104.
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 3099-3104
-
-
Santangelo, T.J.1
Cubonova, L.2
Reeve, J.N.3
-
125
-
-
76649127737
-
Thermococcus kodakarensis genetics: TK1827-encoded beta-glycosidase, new positive-selection protocol, and targeted and repetitive deletion technology
-
Santangelo T.J., Cubonova L., Reeve J.N. Thermococcus kodakarensis genetics: TK1827-encoded beta-glycosidase, new positive-selection protocol, and targeted and repetitive deletion technology. Applied and Environmental Microbiology 2010, 76:1044-1052.
-
(2010)
Applied and Environmental Microbiology
, vol.76
, pp. 1044-1052
-
-
Santangelo, T.J.1
Cubonova, L.2
Reeve, J.N.3
-
126
-
-
28844477575
-
Archaeal RNA polymerase is sensitive to intrinsic termination directed by transcribed and remote sequences
-
Santangelo T.J., Reeve J.N. Archaeal RNA polymerase is sensitive to intrinsic termination directed by transcribed and remote sequences. Journal of Molecular Biology 2006, 355:196-210.
-
(2006)
Journal of Molecular Biology
, vol.355
, pp. 196-210
-
-
Santangelo, T.J.1
Reeve, J.N.2
-
127
-
-
49749084731
-
Regulation of gvp genes encoding gas vesicle proteins in halophilic Archaea
-
Scheuch S., Marschaus L., Sartorius-Neef S., Pfeifer F. Regulation of gvp genes encoding gas vesicle proteins in halophilic Archaea. Archives of Microbiology 2008, 190:333-339.
-
(2008)
Archives of Microbiology
, vol.190
, pp. 333-339
-
-
Scheuch, S.1
Marschaus, L.2
Sartorius-Neef, S.3
Pfeifer, F.4
-
128
-
-
34247270313
-
GvpD-induced breakdown of the transcriptional activator GvpE of halophilic archaea requires a functional p-loop and an arginine-rich region of GvpD
-
Scheuch S., Pfeifer F. GvpD-induced breakdown of the transcriptional activator GvpE of halophilic archaea requires a functional p-loop and an arginine-rich region of GvpD. Microbiology 2007, 153:947-958.
-
(2007)
Microbiology
, vol.153
, pp. 947-958
-
-
Scheuch, S.1
Pfeifer, F.2
-
129
-
-
0037337551
-
AraC protein: A love-hate relationship
-
Schleif R. AraC protein: A love-hate relationship. Bioessays 2003, 25:274-282.
-
(2003)
Bioessays
, vol.25
, pp. 274-282
-
-
Schleif, R.1
-
130
-
-
79954595668
-
Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon
-
Schmid A.K., Pan M., Sharma K., Baliga N.S. Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon. Nucleic Acids Research 2011, 39:2519-2533.
-
(2011)
Nucleic Acids Research
, vol.39
, pp. 2519-2533
-
-
Schmid, A.K.1
Pan, M.2
Sharma, K.3
Baliga, N.S.4
-
131
-
-
67650818533
-
A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability
-
Schmid A.K., Reiss D.J., Pan M., Koide T., Baliga N.S. A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability. Molecular Systems Biology 2009, 5:282.
-
(2009)
Molecular Systems Biology
, vol.5
, pp. 282
-
-
Schmid, A.K.1
Reiss, D.J.2
Pan, M.3
Koide, T.4
Baliga, N.S.5
-
132
-
-
77952687064
-
Transcriptional control by two leucine-responsive regulatory proteins in Halobacterium salinarum R1
-
Schwaiger R., Schwarz C., Furtwangler K., Tarasov V., Wende A., Oesterhelt D. Transcriptional control by two leucine-responsive regulatory proteins in Halobacterium salinarum R1. BMC Molecular Biology 2010, 11:40.
-
(2010)
BMC Molecular Biology
, vol.11
, pp. 40
-
-
Schwaiger, R.1
Schwarz, C.2
Furtwangler, K.3
Tarasov, V.4
Wende, A.5
Oesterhelt, D.6
-
135
-
-
84864333407
-
The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon
-
Sharma K., Gillum N., Boyd J., Schmid A. The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon. BMC Genomics 2012, 13:351.
-
(2012)
BMC Genomics
, vol.13
, pp. 351
-
-
Sharma, K.1
Gillum, N.2
Boyd, J.3
Schmid, A.4
-
136
-
-
0037393082
-
Heat shock response by the hyperthermophilic archaeon Pyrococcus furiosus
-
Shockley K.R., Ward D.E., Chhabra S.R., Conners S.B., Montero C.I., Kelly R.M. Heat shock response by the hyperthermophilic archaeon Pyrococcus furiosus. Applied and Environmental Microbiology 2003, 69:2365-2371.
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 2365-2371
-
-
Shockley, K.R.1
Ward, D.E.2
Chhabra, S.R.3
Conners, S.B.4
Montero, C.I.5
Kelly, R.M.6
-
137
-
-
15644383855
-
Complete genome sequence of Methanobacterium thermoautotrophicum δH: Functional analysis and comparative genomics
-
Smith D.R., Doucette-Stamm L.A., Deloughery C., Lee H., Dubois J., Aldredge T., et al. Complete genome sequence of Methanobacterium thermoautotrophicum δH: Functional analysis and comparative genomics. Journal of Bacteriology 1997, 179:7135-7155.
-
(1997)
Journal of Bacteriology
, vol.179
, pp. 7135-7155
-
-
Smith, D.R.1
Doucette-Stamm, L.A.2
Deloughery, C.3
Lee, H.4
Dubois, J.5
Aldredge, T.6
-
138
-
-
0033052407
-
Transcription initiation in Archaea: Facts, factors and future aspects
-
Soppa J. Transcription initiation in Archaea: Facts, factors and future aspects. Molecular Microbiology 1999, 31:1295-1305.
-
(1999)
Molecular Microbiology
, vol.31
, pp. 1295-1305
-
-
Soppa, J.1
-
140
-
-
0028149973
-
Iron, DtxR, and the regulation of diphtheria toxin expression
-
Tao X., Schiering N., Zeng H., Ringe D., Murphy J. Iron, DtxR, and the regulation of diphtheria toxin expression. Molecular Microbiology 1994, 14:191-197.
-
(1994)
Molecular Microbiology
, vol.14
, pp. 191-197
-
-
Tao, X.1
Schiering, N.2
Zeng, H.3
Ringe, D.4
Murphy, J.5
-
141
-
-
76949083613
-
Interaction of transcription activator GvpE with TATA-box-binding proteins of Halobacterium salinarum
-
Teufel K., Pfeifer F. Interaction of transcription activator GvpE with TATA-box-binding proteins of Halobacterium salinarum. Archives of Microbiology 2010, 192:143-149.
-
(2010)
Archives of Microbiology
, vol.192
, pp. 143-149
-
-
Teufel, K.1
Pfeifer, F.2
-
142
-
-
0031973963
-
Heat shock inducibility of an archaeal TATA-like promoter is controlled by adjacent sequence elements
-
Thompson D., Daniels C.J. Heat shock inducibility of an archaeal TATA-like promoter is controlled by adjacent sequence elements. Molecular Microbiology 1998, 27:541-551.
-
(1998)
Molecular Microbiology
, vol.27
, pp. 541-551
-
-
Thompson, D.1
Daniels, C.J.2
-
143
-
-
84885909649
-
Protein-DNA binding dynamics predict transcriptional response to nutrients in archaea
-
Todor H., Sharma K., Pittman A.M.C., Schmid A.K. Protein-DNA binding dynamics predict transcriptional response to nutrients in archaea. Nucleic Acids Research 2013, 41:8546-8558.
-
(2013)
Nucleic Acids Research
, vol.41
, pp. 8546-8558
-
-
Todor, H.1
Sharma, K.2
Pittman, A.M.C.3
Schmid, A.K.4
-
144
-
-
33745015058
-
Identification of a glycolytic regulon in the archaea Pyrococcus and Thermococcus
-
van de Werken H.J., Verhees C.H., Akerboom J., de Vos W.M., van der Oost J. Identification of a glycolytic regulon in the archaea Pyrococcus and Thermococcus. FEMS Microbiology Letters 2006, 260:69-76.
-
(2006)
FEMS Microbiology Letters
, vol.260
, pp. 69-76
-
-
van de Werken, H.J.1
Verhees, C.H.2
Akerboom, J.3
de Vos, W.M.4
van der Oost, J.5
-
145
-
-
84886257275
-
Sa-Lrp from Sulfolobus acidocaldarius is a versatile, glutamine-responsive, and architectural transcriptional regulator
-
Vassart A., Van Wolferen M., Orell A., Hong Y., Peeters E., Albers S.-V., et al. Sa-Lrp from Sulfolobus acidocaldarius is a versatile, glutamine-responsive, and architectural transcriptional regulator. MicrobiologyOpen 2013, 2:75-93.
-
(2013)
MicrobiologyOpen
, vol.2
, pp. 75-93
-
-
Vassart, A.1
Van Wolferen, M.2
Orell, A.3
Hong, Y.4
Peeters, E.5
Albers, S.-V.6
-
146
-
-
0037414803
-
A novel archaeal transcriptional regulator of heat shock response
-
Vierke G., Engelmann A., Hebbeln C., Thomm M. A novel archaeal transcriptional regulator of heat shock response. Journal of Biological Chemistry 2003, 278:18-26.
-
(2003)
Journal of Biological Chemistry
, vol.278
, pp. 18-26
-
-
Vierke, G.1
Engelmann, A.2
Hebbeln, C.3
Thomm, M.4
-
147
-
-
67349109113
-
Response to excess copper in the hyperthermophile Sulfolobus solfataricus strain 98/2
-
Villafane A.A., Voskoboynik Y., Cuebas M., Ruhl I., Bini E. Response to excess copper in the hyperthermophile Sulfolobus solfataricus strain 98/2. Biochemical and Biophysical Research Communications 2009, 385:67-71.
-
(2009)
Biochemical and Biophysical Research Communications
, vol.385
, pp. 67-71
-
-
Villafane, A.A.1
Voskoboynik, Y.2
Cuebas, M.3
Ruhl, I.4
Bini, E.5
-
148
-
-
80053444741
-
CopR of Sulfolobus solfataricus represents a novel class of archaeal-specific copper-responsive activators of transcription
-
Villafane A., Voskoboynik Y., Ruhl I., Sannino D., Maezato Y., Blum P., et al. CopR of Sulfolobus solfataricus represents a novel class of archaeal-specific copper-responsive activators of transcription. Microbiology 2011, 157:2808-2817.
-
(2011)
Microbiology
, vol.157
, pp. 2808-2817
-
-
Villafane, A.1
Voskoboynik, Y.2
Ruhl, I.3
Sannino, D.4
Maezato, Y.5
Blum, P.6
-
149
-
-
49749117821
-
Insights into the NrpR regulon in Methanosarcina mazei Go1
-
Weidenbach K., Ehlers C., Kock J., Ehrenreich A., Schmitz R.A. Insights into the NrpR regulon in Methanosarcina mazei Go1. Archives of Microbiology 2008, 190:319-332.
-
(2008)
Archives of Microbiology
, vol.190
, pp. 319-332
-
-
Weidenbach, K.1
Ehlers, C.2
Kock, J.3
Ehrenreich, A.4
Schmitz, R.A.5
-
150
-
-
79952113624
-
NrpRII mediates contacts between NrpRI and general transcription factors in the archaeon Methanosarcina mazei Go1
-
Weidenbach K., Ehlers C., Kock J., Schmitz R.A. NrpRII mediates contacts between NrpRI and general transcription factors in the archaeon Methanosarcina mazei Go1. The FEBS Journal 2010, 277:4398-4411.
-
(2010)
The FEBS Journal
, vol.277
, pp. 4398-4411
-
-
Weidenbach, K.1
Ehlers, C.2
Kock, J.3
Schmitz, R.A.4
-
152
-
-
35148814913
-
The methanogenic bacteria
-
Springer, New York, M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.)
-
Whitman W.B., Bowen T.L., Boone D.R. The methanogenic bacteria. The prokaryotes 2006, 165-207. Springer, New York. M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.).
-
(2006)
The prokaryotes
, pp. 165-207
-
-
Whitman, W.B.1
Bowen, T.L.2
Boone, D.R.3
-
153
-
-
78149422245
-
Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR
-
Wisedchaisri G., Dranow D.M., Lie T.J., Bonanno J.B., Patskovsky Y., Ozyurt S.A., et al. Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR. Structure 2010, 18:1512-1521.
-
(2010)
Structure
, vol.18
, pp. 1512-1521
-
-
Wisedchaisri, G.1
Dranow, D.M.2
Lie, T.J.3
Bonanno, J.B.4
Patskovsky, Y.5
Ozyurt, S.A.6
-
154
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese C.R., Kandler O., Wheelis M.L. Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya. Proceedings of the National Academy of Sciences of the United States of America 1990, 87:4576-4579.
-
(1990)
Proceedings of the National Academy of Sciences of the United States of America
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
155
-
-
84930242847
-
The archaea: A personal overview of the formative years
-
Springer, New York, M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.)
-
Wolfe R.S. The archaea: A personal overview of the formative years. The prokaryotes 2006, 3-9. Springer, New York. M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.).
-
(2006)
The prokaryotes
, pp. 3-9
-
-
Wolfe, R.S.1
-
156
-
-
24944442512
-
Regulation of tryptophan operon expression in the archaeon Methanothermobacter thermoautotrophicus
-
Xie Y., Reeve J.N. Regulation of tryptophan operon expression in the archaeon Methanothermobacter thermoautotrophicus. Journal of Bacteriology 2005, 187:6419-6429.
-
(2005)
Journal of Bacteriology
, vol.187
, pp. 6419-6429
-
-
Xie, Y.1
Reeve, J.N.2
-
157
-
-
77956136587
-
SurR regulates hydrogen production in Pyrococcus furiosus by a sulfur-dependent redox switch
-
Yang H., Lipscomb G.L., Keese A.M., Schut G.J., Thomm M., Adams M.W.W., et al. SurR regulates hydrogen production in Pyrococcus furiosus by a sulfur-dependent redox switch. Molecular Microbiology 2010, 77:1111-1122.
-
(2010)
Molecular Microbiology
, vol.77
, pp. 1111-1122
-
-
Yang, H.1
Lipscomb, G.L.2
Keese, A.M.3
Schut, G.J.4
Thomm, M.5
Adams, M.W.W.6
-
158
-
-
36749036126
-
Feast/famine regulation by transcription factor FL11 for the survival of the hyperthermophilic archaeon Pyrococcus OT3
-
Yokoyama K., Ishijima S.A., Koike H., Kurihara C., Shimowasa A., Kabasawa M., et al. Feast/famine regulation by transcription factor FL11 for the survival of the hyperthermophilic archaeon Pyrococcus OT3. Structure 2007, 15:1542-1554.
-
(2007)
Structure
, vol.15
, pp. 1542-1554
-
-
Yokoyama, K.1
Ishijima, S.A.2
Koike, H.3
Kurihara, C.4
Shimowasa, A.5
Kabasawa, M.6
-
159
-
-
68049084862
-
The DNA-recognition mode shared by archaeal feast/famine-regulatory proteins revealed by the DNA-binding specificities of TvFL3, FL10, FL11 and Ss-LrpB
-
Yokoyama K., Nogami H., Kabasawa M., Ebihara S., Shimowasa A., Hashimoto K., et al. The DNA-recognition mode shared by archaeal feast/famine-regulatory proteins revealed by the DNA-binding specificities of TvFL3, FL10, FL11 and Ss-LrpB. Nucleic Acids Research 2009, 37:4407-4419.
-
(2009)
Nucleic Acids Research
, vol.37
, pp. 4407-4419
-
-
Yokoyama, K.1
Nogami, H.2
Kabasawa, M.3
Ebihara, S.4
Shimowasa, A.5
Hashimoto, K.6
-
160
-
-
84877973662
-
Regulation of iron metabolism by Pyrococcus furiosus
-
Zhu Y., Kumar S., Menon A.L., Scott R.A., Adams M.W.W. Regulation of iron metabolism by Pyrococcus furiosus. Journal of Bacteriology 2013, 195:2400-2407.
-
(2013)
Journal of Bacteriology
, vol.195
, pp. 2400-2407
-
-
Zhu, Y.1
Kumar, S.2
Menon, A.L.3
Scott, R.A.4
Adams, M.W.W.5
-
161
-
-
0041663975
-
Regulation of the expression of gas vesicle genes in Haloferax mediterranei: Interaction of the two regulatory proteins GvpD and GvpE
-
Zimmermann P., Pfeifer F. Regulation of the expression of gas vesicle genes in Haloferax mediterranei: Interaction of the two regulatory proteins GvpD and GvpE. Molecular Microbiology 2003, 49:783-794.
-
(2003)
Molecular Microbiology
, vol.49
, pp. 783-794
-
-
Zimmermann, P.1
Pfeifer, F.2
|