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Volumn 89, Issue , 2014, Pages 101-133

Transcription regulation in the third domain

Author keywords

Archaea; Environmental stress; Gene expression; Transcription; Transcription regulation

Indexed keywords

ACETIC ACID; AMINO ACID; ARCHAEAL PROTEIN; CARBON MONOXIDE; DTXR PROTEIN; FERRIC UPTAKE REGULATOR; GLPR PROTEIN; HEAT SHOCK PROTEIN; METAL; METHANOL; SUGAR; SULFUR; TRMB PROTEIN; UNCLASSIFIED DRUG;

EID: 84905995552     PISSN: 00652164     EISSN: None     Source Type: Book Series    
DOI: 10.1016/B978-0-12-800259-9.00003-2     Document Type: Chapter
Times cited : (21)

References (161)
  • 2
    • 0033485460 scopus 로고    scopus 로고
    • DNA-binding proteins and evolution of transcription regulation in the Archaea
    • Aravind L., Koonin E.V. DNA-binding proteins and evolution of transcription regulation in the Archaea. Nucleic Acids Research 1999, 27:4658-4670.
    • (1999) Nucleic Acids Research , vol.27 , pp. 4658-4670
    • Aravind, L.1    Koonin, E.V.2
  • 3
    • 0034077514 scopus 로고    scopus 로고
    • Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors
    • Baliga N.S., Goo Y.A., Ng W.V., Hood L., Daniels C.J., DasSarma S. Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors. Molecular Microbiology 2000, 36:1184-1185.
    • (2000) Molecular Microbiology , vol.36 , pp. 1184-1185
    • Baliga, N.S.1    Goo, Y.A.2    Ng, W.V.3    Hood, L.4    Daniels, C.J.5    DasSarma, S.6
  • 4
    • 0033823109 scopus 로고    scopus 로고
    • The orientation of DNA in an archaeal transcription initiation complex
    • Bartlett M.S., Thomm M., Geiduschek E.P. The orientation of DNA in an archaeal transcription initiation complex. Nature Structural Biology 2000, 7:782-785.
    • (2000) Nature Structural Biology , vol.7 , pp. 782-785
    • Bartlett, M.S.1    Thomm, M.2    Geiduschek, E.P.3
  • 6
    • 20344396840 scopus 로고    scopus 로고
    • Archaeal transcriptional regulation-Variation on a bacterial theme?
    • Bell S.D. Archaeal transcriptional regulation-Variation on a bacterial theme?. Trends in Microbiology 2005, 13:262-265.
    • (2005) Trends in Microbiology , vol.13 , pp. 262-265
    • Bell, S.D.1
  • 7
    • 0033400812 scopus 로고    scopus 로고
    • Transcriptional regulation of an archaeal operon in vivo and in vitro
    • Bell S.D., Cairns S.S., Robson R.L., Jackson S.P. Transcriptional regulation of an archaeal operon in vivo and in vitro. Molecular Cell 1999, 4:971-982.
    • (1999) Molecular Cell , vol.4 , pp. 971-982
    • Bell, S.D.1    Cairns, S.S.2    Robson, R.L.3    Jackson, S.P.4
  • 9
    • 49749085907 scopus 로고    scopus 로고
    • The order Thermococcales
    • Springer, New York, M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.)
    • Bertoldo C., Antranikian G. The order Thermococcales. The prokaryotes 2006, 69-81. Springer, New York. M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.).
    • (2006) The prokaryotes , pp. 69-81
    • Bertoldo, C.1    Antranikian, G.2
  • 10
    • 0034796321 scopus 로고    scopus 로고
    • Archaeal catabolite repression: A gene regulatory paradigm
    • Bini E., Blum P. Archaeal catabolite repression: A gene regulatory paradigm. Advances in Applied Microbiology 2001, 50:339-366.
    • (2001) Advances in Applied Microbiology , vol.50 , pp. 339-366
    • Bini, E.1    Blum, P.2
  • 11
    • 70350150787 scopus 로고    scopus 로고
    • Regulation of putative methyl-sulphide methyltransferases in Methanosarcina acetivorans C2A
    • Bose A., Kulkarni G., Metcalf W.W. Regulation of putative methyl-sulphide methyltransferases in Methanosarcina acetivorans C2A. Molecular Microbiology 2009, 74:227-238.
    • (2009) Molecular Microbiology , vol.74 , pp. 227-238
    • Bose, A.1    Kulkarni, G.2    Metcalf, W.W.3
  • 12
    • 37749010878 scopus 로고    scopus 로고
    • Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2A
    • Bose A., Metcalf W.W. Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2A. Molecular Microbiology 2007, 37:649-661.
    • (2007) Molecular Microbiology , vol.37 , pp. 649-661
    • Bose, A.1    Metcalf, W.W.2
  • 13
    • 0037119358 scopus 로고    scopus 로고
    • The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability
    • Brinkman A.B., Bell S.D., Lebbink R.J., de Vos W.M., van der Oost J. The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability. Journal of Biological Chemistry 2002, 277:29537-29549.
    • (2002) Journal of Biological Chemistry , vol.277 , pp. 29537-29549
    • Brinkman, A.B.1    Bell, S.D.2    Lebbink, R.J.3    de Vos, W.M.4    van der Oost, J.5
  • 15
    • 33745228417 scopus 로고    scopus 로고
    • The catalase and superoxide dismutase genes are transcriptionally up-regulated upon oxidative stress in the strictly anaerobic archaeon Methanosarcina barkeri
    • Brioukhanov A.L., Netrusov A.I., Eggen R.I.L. The catalase and superoxide dismutase genes are transcriptionally up-regulated upon oxidative stress in the strictly anaerobic archaeon Methanosarcina barkeri. Microbiology 2006, 152:1671-1677.
    • (2006) Microbiology , vol.152 , pp. 1671-1677
    • Brioukhanov, A.L.1    Netrusov, A.I.2    Eggen, R.I.L.3
  • 16
    • 79952613800 scopus 로고    scopus 로고
    • Genetic methods for Methanosarcina species
    • Academic Press, New York, (chapter 2), C.R. Amy, W.R. Stephen (Eds.)
    • Buan N., Kulkarni G., Metcalf W. Genetic methods for Methanosarcina species. Methods in enzymology 2011, 23-42. Academic Press, New York, (chapter 2). C.R. Amy, W.R. Stephen (Eds.).
    • (2011) Methods in enzymology , pp. 23-42
    • Buan, N.1    Kulkarni, G.2    Metcalf, W.3
  • 20
    • 0032899732 scopus 로고    scopus 로고
    • Function and regulation of glnA in the methanogenic archaeon Methanococcus maripaludis
    • Cohen-Kupiec R., Marx C.J., Leigh J.A. Function and regulation of glnA in the methanogenic archaeon Methanococcus maripaludis. Journal of Bacteriology 1999, 181:256-261.
    • (1999) Journal of Bacteriology , vol.181 , pp. 256-261
    • Cohen-Kupiec, R.1    Marx, C.J.2    Leigh, J.A.3
  • 21
    • 37049013315 scopus 로고    scopus 로고
    • Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: Coordinate action of TbpD and TfbA
    • Coker J.A., DasSarma S. Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: Coordinate action of TbpD and TfbA. BMC Genetics 2007, 8:61.
    • (2007) BMC Genetics , vol.8 , pp. 61
    • Coker, J.A.1    DasSarma, S.2
  • 22
    • 79952859902 scopus 로고    scopus 로고
    • C68 from the Sulfolobus islandicus plasmid-virus pSSVx is a novel member of the AbrB-like transcription factor family
    • Contursi P., D'Ambrosio K., Pirone L., Pedone E., Aucelli T., She Q., et al. C68 from the Sulfolobus islandicus plasmid-virus pSSVx is a novel member of the AbrB-like transcription factor family. Biochemical Journal 2011, 435:157-166.
    • (2011) Biochemical Journal , vol.435 , pp. 157-166
    • Contursi, P.1    D'Ambrosio, K.2    Pirone, L.3    Pedone, E.4    Aucelli, T.5    She, Q.6
  • 23
    • 84886288654 scopus 로고    scopus 로고
    • Host and viral transcriptional regulators in Sulfolobus: An overview
    • Contursi P., Fusco S., Limauro D., Fiorentino G. Host and viral transcriptional regulators in Sulfolobus: An overview. Extremophiles 2013, 17:881-895.
    • (2013) Extremophiles , vol.17 , pp. 881-895
    • Contursi, P.1    Fusco, S.2    Limauro, D.3    Fiorentino, G.4
  • 25
    • 0035476428 scopus 로고    scopus 로고
    • A role for rubredoxin in oxidative stress protection in Desulfovibrio vulgaris: Catalytic electron transfer to rubrerythrin and two-iron superoxide reductase
    • Coulter E.D., Kurtz D.M. A role for rubredoxin in oxidative stress protection in Desulfovibrio vulgaris: Catalytic electron transfer to rubrerythrin and two-iron superoxide reductase. Archives of Biochemistry and Biophysics 2001, 394:76-86.
    • (2001) Archives of Biochemistry and Biophysics , vol.394 , pp. 76-86
    • Coulter, E.D.1    Kurtz, D.M.2
  • 26
    • 34249820791 scopus 로고    scopus 로고
    • Spontaneous trpY mutants and mutational analysis of the TrpY archaeal transcription regulator
    • Čuboňovà L., Sandman K., Karr E.A., Cochran A.J., Reeve J.N. Spontaneous trpY mutants and mutational analysis of the TrpY archaeal transcription regulator. Journal of Bacteriology 2007, 189:4338-4342.
    • (2007) Journal of Bacteriology , vol.189 , pp. 4338-4342
    • Čuboňovà, L.1    Sandman, K.2    Karr, E.A.3    Cochran, A.J.4    Reeve, J.N.5
  • 28
  • 29
    • 79953161982 scopus 로고    scopus 로고
    • Characterization of the specific interaction between archaeal FHA domain-containing protein and the promoter of a flagellar-like gene-cluster and its regulation by phosphorylation
    • Duan X., He Z.G. Characterization of the specific interaction between archaeal FHA domain-containing protein and the promoter of a flagellar-like gene-cluster and its regulation by phosphorylation. Biochemical and Biophysical Research Communications 2011, 407:242-247.
    • (2011) Biochemical and Biophysical Research Communications , vol.407 , pp. 242-247
    • Duan, X.1    He, Z.G.2
  • 30
    • 0034044849 scopus 로고    scopus 로고
    • Purification and characterization of Sa-Lrp, a DNA-binding protein from the extreme thermoacidophilic archaeon Sulfolobus acidocaldarius homologous to the bacterial global transcriptional regulator Lrp
    • Enoru-Eta J., Gigot D., Thia-Toong T.L., Glansdorff N., Charlier D. Purification and characterization of Sa-Lrp, a DNA-binding protein from the extreme thermoacidophilic archaeon Sulfolobus acidocaldarius homologous to the bacterial global transcriptional regulator Lrp. Journal of Bacteriology 2000, 182:3661-3672.
    • (2000) Journal of Bacteriology , vol.182 , pp. 3661-3672
    • Enoru-Eta, J.1    Gigot, D.2    Thia-Toong, T.L.3    Glansdorff, N.4    Charlier, D.5
  • 31
    • 33746048460 scopus 로고    scopus 로고
    • Molecular characterization of a conserved archaeal copper resistance (cop) gene cluster and its copper-responsive regulator in Sulfolobus solfataricus P2
    • Ettema T.J., Brinkman A.B., Lamers P.P., Kornet N.G., de Vos W.M., van der Oost J. Molecular characterization of a conserved archaeal copper resistance (cop) gene cluster and its copper-responsive regulator in Sulfolobus solfataricus P2. Microbiology 2006, 152:1969-1979.
    • (2006) Microbiology , vol.152 , pp. 1969-1979
    • Ettema, T.J.1    Brinkman, A.B.2    Lamers, P.P.3    Kornet, N.G.4    de Vos, W.M.5    van der Oost, J.6
  • 32
    • 0242418181 scopus 로고    scopus 로고
    • TRASH: A novel metal-binding domain predicted to be involved in heavy-metal sensing, trafficking and resistance
    • Ettema T.J., Huynen M.A., de Vos W.M., van der Oost J. TRASH: A novel metal-binding domain predicted to be involved in heavy-metal sensing, trafficking and resistance. Trends in Biochemical Sciences 2003, 28:170-173.
    • (2003) Trends in Biochemical Sciences , vol.28 , pp. 170-173
    • Ettema, T.J.1    Huynen, M.A.2    de Vos, W.M.3    van der Oost, J.4
  • 34
    • 84877340268 scopus 로고    scopus 로고
    • Tlys, a newly identified Sulfolobus spindle-shaped virus 1 transcript expressed in the lysogenic state, encodes a DNA-binding protein interacting at the promoters of the early genes
    • Fusco S., She Q., Bartolucci S., Contursi P. Tlys, a newly identified Sulfolobus spindle-shaped virus 1 transcript expressed in the lysogenic state, encodes a DNA-binding protein interacting at the promoters of the early genes. Journal of Virology 2013, 87:5926-5936.
    • (2013) Journal of Virology , vol.87 , pp. 5926-5936
    • Fusco, S.1    She, Q.2    Bartolucci, S.3    Contursi, P.4
  • 36
    • 47549110972 scopus 로고    scopus 로고
    • Carbon catabolite repression in bacteria: Many ways to make the most out of nutrients
    • Gorke B., Stulke J. Carbon catabolite repression in bacteria: Many ways to make the most out of nutrients. Nature Reviews. Microbiology 2008, 6:613-624.
    • (2008) Nature Reviews. Microbiology , vol.6 , pp. 613-624
    • Gorke, B.1    Stulke, J.2
  • 37
    • 79959298162 scopus 로고    scopus 로고
    • Recent advances in the understanding of archaeal transcription
    • Grohmann D., Werner F. Recent advances in the understanding of archaeal transcription. Current Opinion in Microbiology 2011, 14:328-334.
    • (2011) Current Opinion in Microbiology , vol.14 , pp. 328-334
    • Grohmann, D.1    Werner, F.2
  • 39
    • 69249132878 scopus 로고    scopus 로고
    • Structure, function, and targets of the transcriptional regulator SvtR from the hyperthermophilic archaeal virus SIRV1
    • Guilliere F., Peixeiro N., Kessler A., Raynal B., Desnoues N., Keller J., et al. Structure, function, and targets of the transcriptional regulator SvtR from the hyperthermophilic archaeal virus SIRV1. Journal of Biological Chemistry 2009, 284:22222-22237.
    • (2009) Journal of Biological Chemistry , vol.284 , pp. 22222-22237
    • Guilliere, F.1    Peixeiro, N.2    Kessler, A.3    Raynal, B.4    Desnoues, N.5    Keller, J.6
  • 40
    • 0035069457 scopus 로고    scopus 로고
    • Iron and metal regulation in bacteria
    • Hantke K. Iron and metal regulation in bacteria. Current Opinion in Microbiology 2001, 4:172-177.
    • (2001) Current Opinion in Microbiology , vol.4 , pp. 172-177
    • Hantke, K.1
  • 41
    • 0033061353 scopus 로고    scopus 로고
    • Coordinate transcriptional control in the hyperthermophilic archaeon Sulfolobus solfataricus
    • Haseltine C.A., Montalvo-Rodriguez R., Bini E., Carl A., Blum P. Coordinate transcriptional control in the hyperthermophilic archaeon Sulfolobus solfataricus. Journal of Bacteriology 1999, 181:3920-3927.
    • (1999) Journal of Bacteriology , vol.181 , pp. 3920-3927
    • Haseltine, C.A.1    Montalvo-Rodriguez, R.2    Bini, E.3    Carl, A.4    Blum, P.5
  • 42
    • 0030064025 scopus 로고    scopus 로고
    • The glucose effect and regulation of alpha-amylase synthesis in the hyperthermophilic archaeon Sulfolobus solfataricus
    • Haseltine C.A., Rolfsmeier M., Blum P. The glucose effect and regulation of alpha-amylase synthesis in the hyperthermophilic archaeon Sulfolobus solfataricus. Journal of Bacteriology 1996, 178:945-950.
    • (1996) Journal of Bacteriology , vol.178 , pp. 945-950
    • Haseltine, C.A.1    Rolfsmeier, M.2    Blum, P.3
  • 44
    • 4944254822 scopus 로고    scopus 로고
    • Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis
    • Hendrickson E.L., Kaul R., Zhou Y., Bovee D., Chapman P., Chung J., et al. Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis. Journal of Bacteriology 2004, 186:6956-6969.
    • (2004) Journal of Bacteriology , vol.186 , pp. 6956-6969
    • Hendrickson, E.L.1    Kaul, R.2    Zhou, Y.3    Bovee, D.4    Chapman, P.5    Chung, J.6
  • 47
    • 39149142997 scopus 로고    scopus 로고
    • The X-ray crystal structure of RNA polymerase from Archaea
    • Hirata A., Klein B.J., Murakami K.S. The X-ray crystal structure of RNA polymerase from Archaea. Nature 2008, 451:851-854.
    • (2008) Nature , vol.451 , pp. 851-854
    • Hirata, A.1    Klein, B.J.2    Murakami, K.S.3
  • 48
    • 4644342125 scopus 로고    scopus 로고
    • The role of cis-acting sequences governing catabolite repression control of lacS expression in the archaeon Sulfolobus solfataricus
    • Hoang V., Bini E., Dixit V., Drozda M., Blum P. The role of cis-acting sequences governing catabolite repression control of lacS expression in the archaeon Sulfolobus solfataricus. Genetics 2004, 167:1563-1572.
    • (2004) Genetics , vol.167 , pp. 1563-1572
    • Hoang, V.1    Bini, E.2    Dixit, V.3    Drozda, M.4    Blum, P.5
  • 49
    • 0031664705 scopus 로고    scopus 로고
    • The formylmethanofuran dehydrogenase isoenzymes in Methaobacterium wolfei and Methanobacterium thermoautotrophicum: Induction of the molybdenum isoenzyme by molybdate and constitutive synthesis of the tungsten isoenzyme
    • Hochheimer A., Hedderich R., Thauer R.K. The formylmethanofuran dehydrogenase isoenzymes in Methaobacterium wolfei and Methanobacterium thermoautotrophicum: Induction of the molybdenum isoenzyme by molybdate and constitutive synthesis of the tungsten isoenzyme. Archives of Microbiology 1998, 170:389-393.
    • (1998) Archives of Microbiology , vol.170 , pp. 389-393
    • Hochheimer, A.1    Hedderich, R.2    Thauer, R.K.3
  • 50
    • 0032956998 scopus 로고    scopus 로고
    • The DNA binding protein Tfx from Methanobacterium thermoautotrophicum: Structure, DNA binding properties and transcriptional regulation
    • Hochheimer A., Hedderich R., Thauer R.K. The DNA binding protein Tfx from Methanobacterium thermoautotrophicum: Structure, DNA binding properties and transcriptional regulation. Molecular Microbiology 1999, 31:641-650.
    • (1999) Molecular Microbiology , vol.31 , pp. 641-650
    • Hochheimer, A.1    Hedderich, R.2    Thauer, R.K.3
  • 51
    • 0029989411 scopus 로고    scopus 로고
    • The molybdenum formylmethanofuran dehydrogenase operon and the tungsten formylmethanofuran dehydrogenase operon from Methanobacterium thermoautotrophicum: Structures and transcriptional regulation
    • Hochheimer A., Linder D., Thauer R.K., Hedderich R. The molybdenum formylmethanofuran dehydrogenase operon and the tungsten formylmethanofuran dehydrogenase operon from Methanobacterium thermoautotrophicum: Structures and transcriptional regulation. European Journal of Biochemistry 1996, 242:156-162.
    • (1996) European Journal of Biochemistry , vol.242 , pp. 156-162
    • Hochheimer, A.1    Linder, D.2    Thauer, R.K.3    Hedderich, R.4
  • 52
    • 0029583885 scopus 로고
    • The tungsten formylmethanofuran dehydrogenase from Methanobacterium thermoautotrophicum contains sequence motifs characteristic for enzymes containing molybdopterin dinucleotide
    • Hochheimer A., Schmitz R.A., Thauer R.K., Hedderich R. The tungsten formylmethanofuran dehydrogenase from Methanobacterium thermoautotrophicum contains sequence motifs characteristic for enzymes containing molybdopterin dinucleotide. European Journal of Biochemistry 1995, 234:910-920.
    • (1995) European Journal of Biochemistry , vol.234 , pp. 910-920
    • Hochheimer, A.1    Schmitz, R.A.2    Thauer, R.K.3    Hedderich, R.4
  • 53
    • 3142767630 scopus 로고    scopus 로고
    • GvpE- and GvpD-mediated transcription regulation of the p-gvp genes encoding gas vesicles in Halobacterium salinarum
    • Hofacker A., Schmitz K.M., Cichonczyk A., Sartorius-Neef S., Pfeifer F. GvpE- and GvpD-mediated transcription regulation of the p-gvp genes encoding gas vesicles in Halobacterium salinarum. Microbiology 2004, 150:1829-1838.
    • (2004) Microbiology , vol.150 , pp. 1829-1838
    • Hofacker, A.1    Schmitz, K.M.2    Cichonczyk, A.3    Sartorius-Neef, S.4    Pfeifer, F.5
  • 54
    • 84877602025 scopus 로고    scopus 로고
    • Assessment of the oxidant tolerance of Methanosarcina acetivorans
    • Horne A.J., Lessner D.J. Assessment of the oxidant tolerance of Methanosarcina acetivorans. FEMS Microbiology Letters 2013, 343:13-19.
    • (2013) FEMS Microbiology Letters , vol.343 , pp. 13-19
    • Horne, A.J.1    Lessner, D.J.2
  • 55
    • 84880125786 scopus 로고    scopus 로고
    • Redox-sensitive DNA binding by homodimeric Methanosarcina acetivorans MsvR is modulated by cysteine residues
    • Isom C.E., Turner J.L., Lessner D.J., Karr E.A. Redox-sensitive DNA binding by homodimeric Methanosarcina acetivorans MsvR is modulated by cysteine residues. BMC Microbiology 2013, 13:163.
    • (2013) BMC Microbiology , vol.13 , pp. 163
    • Isom, C.E.1    Turner, J.L.2    Lessner, D.J.3    Karr, E.A.4
  • 56
    • 84862754646 scopus 로고    scopus 로고
    • The archaellum: An old motility structure with a new name
    • Jarrell K.F., Albers S.V. The archaellum: An old motility structure with a new name. Trends in Microbiology 2012, 20:307-312.
    • (2012) Trends in Microbiology , vol.20 , pp. 307-312
    • Jarrell, K.F.1    Albers, S.V.2
  • 57
    • 84893519174 scopus 로고    scopus 로고
    • Expression of a bacterial catalase in a strictly anaerobic methanogen significantly increases tolerance to hydrogen peroxide but not oxygen
    • Jennings M.E., Schaff C.W., Horne A.J., Lessner F.H., Lessner D.J. Expression of a bacterial catalase in a strictly anaerobic methanogen significantly increases tolerance to hydrogen peroxide but not oxygen. Microbiology 2014, 160:270-278.
    • (2014) Microbiology , vol.160 , pp. 270-278
    • Jennings, M.E.1    Schaff, C.W.2    Horne, A.J.3    Lessner, F.H.4    Lessner, D.J.5
  • 59
    • 36348974664 scopus 로고    scopus 로고
    • A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes
    • Kanai T., Akerboom J., Takedomi S., van de Werken H.J., Blombach F., van der Oost J., et al. A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes. Journal of Biological Chemistry 2007, 282:33659-33670.
    • (2007) Journal of Biological Chemistry , vol.282 , pp. 33659-33670
    • Kanai, T.1    Akerboom, J.2    Takedomi, S.3    van de Werken, H.J.4    Blombach, F.5    van der Oost, J.6
  • 60
    • 78049425692 scopus 로고    scopus 로고
    • The methanogen-specific transcription factor MsvR regulates the fpaA-rlp-rub oxidative stress operon adjacent to msvR in Methanothermobacter thermautotrophicus
    • Karr E.A. The methanogen-specific transcription factor MsvR regulates the fpaA-rlp-rub oxidative stress operon adjacent to msvR in Methanothermobacter thermautotrophicus. Journal of Bacteriology 2010, 192:5914-5922.
    • (2010) Journal of Bacteriology , vol.192 , pp. 5914-5922
    • Karr, E.A.1
  • 61
    • 41549104237 scopus 로고    scopus 로고
    • TrpY regulation of trpB2 transcription in Methanothermobacter thermautotrophicus
    • Karr E.A., Sandman K., Lurz R., Reeve J.N. TrpY regulation of trpB2 transcription in Methanothermobacter thermautotrophicus. Journal of Bacteriology 2008, 190:2637-2641.
    • (2008) Journal of Bacteriology , vol.190 , pp. 2637-2641
    • Karr, E.A.1    Sandman, K.2    Lurz, R.3    Reeve, J.N.4
  • 62
    • 40949088993 scopus 로고    scopus 로고
    • Comparative transcriptome analysis of responses of Methanothermobacter thermautotrophicus to different environmental stimuli
    • Kato S., Kosaka T., Watanabe K. Comparative transcriptome analysis of responses of Methanothermobacter thermautotrophicus to different environmental stimuli. Environmental Microbiology 2008, 10:893-905.
    • (2008) Environmental Microbiology , vol.10 , pp. 893-905
    • Kato, S.1    Kosaka, T.2    Watanabe, K.3
  • 63
  • 64
    • 13644264825 scopus 로고    scopus 로고
    • Oxidative stress response in an anaerobic hyperthermophilic archaeon: Presence of a functional peroxiredoxin in Pyrococcus horikoshii
    • Kawakami R., Sakuraba H., Kamohara S., Goda S., Kawarabayasi Y., Ohshima T. Oxidative stress response in an anaerobic hyperthermophilic archaeon: Presence of a functional peroxiredoxin in Pyrococcus horikoshii. Journal of Biochemistry (Tokyo) 2004, 136:541-547.
    • (2004) Journal of Biochemistry (Tokyo) , vol.136 , pp. 541-547
    • Kawakami, R.1    Sakuraba, H.2    Kamohara, S.3    Goda, S.4    Kawarabayasi, Y.5    Ohshima, T.6
  • 65
    • 77749297959 scopus 로고    scopus 로고
    • Genome-wide identification of targets for the archaeal heat shock regulator Phr by cell-free transcription of genomic DNA
    • Keese A.M., Schut G.J., Ouhammouch M., Adams M.W.W., Thomm M. Genome-wide identification of targets for the archaeal heat shock regulator Phr by cell-free transcription of genomic DNA. Journal of Bacteriology 2010, 192:1292-1298.
    • (2010) Journal of Bacteriology , vol.192 , pp. 1292-1298
    • Keese, A.M.1    Schut, G.J.2    Ouhammouch, M.3    Adams, M.W.W.4    Thomm, M.5
  • 66
    • 0031895257 scopus 로고    scopus 로고
    • The nif gene operon of the methanogenic archaeon Methanococcus maripaludis
    • Kessler P.S., Blank C., Leigh J.A. The nif gene operon of the methanogenic archaeon Methanococcus maripaludis. Journal of Bacteriology 1998, 180:1504-1511.
    • (1998) Journal of Bacteriology , vol.180 , pp. 1504-1511
    • Kessler, P.S.1    Blank, C.2    Leigh, J.A.3
  • 67
    • 0344289523 scopus 로고    scopus 로고
    • Genetics of nitrogen regulation in Methanococcus maripaludis
    • Kessler P.S., Leigh J.A. Genetics of nitrogen regulation in Methanococcus maripaludis. Genetics 1999, 152:1343-1351.
    • (1999) Genetics , vol.152 , pp. 1343-1351
    • Kessler, P.S.1    Leigh, J.A.2
  • 69
    • 0036193380 scopus 로고    scopus 로고
    • Structure-function relationship and regulation of two Bacillus subtilis DNA-binding proteins, HBsu and AbrB
    • Klein W., Marahiel M. Structure-function relationship and regulation of two Bacillus subtilis DNA-binding proteins, HBsu and AbrB. Journal of Molecular Microbiology and Biotechnology 2002, 4:323-329.
    • (2002) Journal of Molecular Microbiology and Biotechnology , vol.4 , pp. 323-329
    • Klein, W.1    Marahiel, M.2
  • 72
    • 84881286971 scopus 로고    scopus 로고
    • The three-dimensional structure of TrmB, a transcriptional regulator of dual function in the hyperthermophilic archaeon Pyrococcus furiosus in complex with sucrose
    • Krug M., Lee S.J., Boos W., Diederichs K., Welte W. The three-dimensional structure of TrmB, a transcriptional regulator of dual function in the hyperthermophilic archaeon Pyrococcus furiosus in complex with sucrose. Protein Science 2013, 22:800-808.
    • (2013) Protein Science , vol.22 , pp. 800-808
    • Krug, M.1    Lee, S.J.2    Boos, W.3    Diederichs, K.4    Welte, W.5
  • 73
    • 33744964881 scopus 로고    scopus 로고
    • Crystal structure of the sugar binding domain of the archaeal transcriptional regulator TrmB
    • Krug M., Lee S.J., Diederichs K., Boos W., Welte W. Crystal structure of the sugar binding domain of the archaeal transcriptional regulator TrmB. Journal of Biological Chemistry 2006, 281:10976-10982.
    • (2006) Journal of Biological Chemistry , vol.281 , pp. 10976-10982
    • Krug, M.1    Lee, S.J.2    Diederichs, K.3    Boos, W.4    Welte, W.5
  • 74
    • 0032546745 scopus 로고    scopus 로고
    • The transcriptional activator GvpE for the halobacterial gas vesicle genes resembles a basic region leucing-zipper regulatory protein
    • Kruger K., Hermann T., Armbruster V., Pfeifer F. The transcriptional activator GvpE for the halobacterial gas vesicle genes resembles a basic region leucing-zipper regulatory protein. Journal of Molecular Biology 1998, 279:761-771.
    • (1998) Journal of Molecular Biology , vol.279 , pp. 761-771
    • Kruger, K.1    Hermann, T.2    Armbruster, V.3    Pfeifer, F.4
  • 75
    • 0030816276 scopus 로고    scopus 로고
    • Characterization of two heat shock genes from Haloferax volcanii: A model system for transcription regulation in the Archaea
    • Kuo Y., Thompson D., St Jean A., Charlebois R.L., Daniel C. Characterization of two heat shock genes from Haloferax volcanii: A model system for transcription regulation in the Archaea. Journal of Bacteriology 1997, 179:6318-6324.
    • (1997) Journal of Bacteriology , vol.179 , pp. 6318-6324
    • Kuo, Y.1    Thompson, D.2    St Jean, A.3    Charlebois, R.L.4    Daniel, C.5
  • 77
    • 84875590805 scopus 로고    scopus 로고
    • The one-component system ArnR: A membrane-bound activator of the crenarchaeal archaellum
    • Lassak K., Peeters E., Wróbel S., Albers S.-V. The one-component system ArnR: A membrane-bound activator of the crenarchaeal archaellum. Molecular Microbiology 2013, 88:125-139.
    • (2013) Molecular Microbiology , vol.88 , pp. 125-139
    • Lassak, K.1    Peeters, E.2    Wróbel, S.3    Albers, S.-V.4
  • 78
    • 0037428467 scopus 로고    scopus 로고
    • TrmB, a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter from the hyperthermophilic archaeon Thermococcus litoralis
    • Lee S.J., Engelmann A., Horlacher R., Qu Q., Vierke G., Hebbeln C., et al. TrmB, a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter from the hyperthermophilic archaeon Thermococcus litoralis. Journal of Biological Chemistry 2003, 278:983-990.
    • (2003) Journal of Biological Chemistry , vol.278 , pp. 983-990
    • Lee, S.J.1    Engelmann, A.2    Horlacher, R.3    Qu, Q.4    Vierke, G.5    Hebbeln, C.6
  • 79
    • 25144461083 scopus 로고    scopus 로고
    • TrmB, a sugar sensing regulator of ABC transporter genes in Pyrococcus furiosus exhibits dual promoter specificity and is controlled by different inducers
    • Lee S.-J., Moulakakis C., Koning S.M., Hausner W., Thomm M., Boos W. TrmB, a sugar sensing regulator of ABC transporter genes in Pyrococcus furiosus exhibits dual promoter specificity and is controlled by different inducers. Molecular Microbiology 2005, 57:1797-1807.
    • (2005) Molecular Microbiology , vol.57 , pp. 1797-1807
    • Lee, S.-J.1    Moulakakis, C.2    Koning, S.M.3    Hausner, W.4    Thomm, M.5    Boos, W.6
  • 80
    • 49749153798 scopus 로고    scopus 로고
    • The role of TrmB and TrmB-like transcriptional regulators for sugar transport and metabolism in the hyperthermophilic archaeon Pyrococcus furiosus
    • Lee S.J., Surma M., Hausner W., Thomm M., Boos W. The role of TrmB and TrmB-like transcriptional regulators for sugar transport and metabolism in the hyperthermophilic archaeon Pyrococcus furiosus. Archives of Microbiology 2008, 190:247-256.
    • (2008) Archives of Microbiology , vol.190 , pp. 247-256
    • Lee, S.J.1    Surma, M.2    Hausner, W.3    Thomm, M.4    Boos, W.5
  • 81
    • 34250026433 scopus 로고    scopus 로고
    • Differential signal transduction via TrmB, a sugar sensing transcriptional repressor of Pyrococcus furiosus
    • Lee S., Surma M., Seitz S., Hausner W., Thomm M., Boos W. Differential signal transduction via TrmB, a sugar sensing transcriptional repressor of Pyrococcus furiosus. Molecular Microbiology 2007, 64:1499-1505.
    • (2007) Molecular Microbiology , vol.64 , pp. 1499-1505
    • Lee, S.1    Surma, M.2    Seitz, S.3    Hausner, W.4    Thomm, M.5    Boos, W.6
  • 82
    • 34447328994 scopus 로고    scopus 로고
    • Characterization of the TrmB-like protein, PF0124, a TGM-recognizing global transcriptional regulator of the hyperthermophilic archaeon Pyrococcus furiosus
    • Lee S.J., Surma M., Seitz S., Hausner W., Thomm M., Boos W. Characterization of the TrmB-like protein, PF0124, a TGM-recognizing global transcriptional regulator of the hyperthermophilic archaeon Pyrococcus furiosus. Molecular Microbiology 2007, 65:305-318.
    • (2007) Molecular Microbiology , vol.65 , pp. 305-318
    • Lee, S.J.1    Surma, M.2    Seitz, S.3    Hausner, W.4    Thomm, M.5    Boos, W.6
  • 83
    • 79958073627 scopus 로고    scopus 로고
    • Model organisms for genetics in the domain Archaea: Methanogens, halophiles, Thermococcales and Sulfolobales
    • Leigh J.A., Albers S.V., Atomi H., Allers T. Model organisms for genetics in the domain Archaea: Methanogens, halophiles, Thermococcales and Sulfolobales. FEMS Microbiology Reviews 2011, 35:577-608.
    • (2011) FEMS Microbiology Reviews , vol.35 , pp. 577-608
    • Leigh, J.A.1    Albers, S.V.2    Atomi, H.3    Allers, T.4
  • 84
    • 84879088130 scopus 로고    scopus 로고
    • Allostery and the lac operon
    • Lewis M. Allostery and the lac operon. Journal of Molecular Biology 2013, 425:2309-2316.
    • (2013) Journal of Molecular Biology , vol.425 , pp. 2309-2316
    • Lewis, M.1
  • 85
    • 33847369414 scopus 로고    scopus 로고
    • Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol
    • Li L., Li Q., Rohlin L., Kim U., Salmon K., Rejtar T., et al. Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol. Journal of Proteome Research 2006, 6:759-771.
    • (2006) Journal of Proteome Research , vol.6 , pp. 759-771
    • Li, L.1    Li, Q.2    Rohlin, L.3    Kim, U.4    Salmon, K.5    Rejtar, T.6
  • 86
    • 34249023906 scopus 로고    scopus 로고
    • Diverse homologues of the archaeal repressor NrpR function similarly in nitrogen regulation
    • Lie T.J., Dodsworth J.A., Nickle D.C., Leigh J.A. Diverse homologues of the archaeal repressor NrpR function similarly in nitrogen regulation. FEMS Microbiology Letters 2007, 271:281-288.
    • (2007) FEMS Microbiology Letters , vol.271 , pp. 281-288
    • Lie, T.J.1    Dodsworth, J.A.2    Nickle, D.C.3    Leigh, J.A.4
  • 87
    • 0037221867 scopus 로고    scopus 로고
    • A novel repressor of nif and glnA expression in the methanogenic archaeon Methanococcus maripaludis
    • Lie T.J., Leigh J.A. A novel repressor of nif and glnA expression in the methanogenic archaeon Methanococcus maripaludis. Molecular Microbiology 2003, 47:235-246.
    • (2003) Molecular Microbiology , vol.47 , pp. 235-246
    • Lie, T.J.1    Leigh, J.A.2
  • 88
    • 35448939174 scopus 로고    scopus 로고
    • Genetic screen for regulatory mutations in Methanococcus maripaludis and its use in identification of induction-deficient mutants of the euryarchaeal repressor NrpR
    • Lie T.J., Leigh J.A. Genetic screen for regulatory mutations in Methanococcus maripaludis and its use in identification of induction-deficient mutants of the euryarchaeal repressor NrpR. Applied and Environmental Microbiology 2007, 73:6595-6600.
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 6595-6600
    • Lie, T.J.1    Leigh, J.A.2
  • 89
    • 14044255851 scopus 로고    scopus 로고
    • Regulation of nif expression in Methanococcus maripaludis: Roles of the euryarchaeal repressor NrpR, 2-oxoglutarate, and two operators
    • Lie T.J., Wood G.E., Leigh J.A. Regulation of nif expression in Methanococcus maripaludis: Roles of the euryarchaeal repressor NrpR, 2-oxoglutarate, and two operators. Journal of Biological Chemistry 2005, 280:5236-5241.
    • (2005) Journal of Biological Chemistry , vol.280 , pp. 5236-5241
    • Lie, T.J.1    Wood, G.E.2    Leigh, J.A.3
  • 90
    • 58149301541 scopus 로고    scopus 로고
    • SurR: A transcriptional activator and repressor controlling hydrogen and elemental sulphur metabolism in Pyrococcus furiosus
    • Lipscomb G.L., Annette M.K., Darin M.C., Gerrit J.S., Michael T., Michael W.W.A., et al. SurR: A transcriptional activator and repressor controlling hydrogen and elemental sulphur metabolism in Pyrococcus furiosus. Molecular Microbiology 2009, 71:332-349.
    • (2009) Molecular Microbiology , vol.71 , pp. 332-349
    • Lipscomb, G.L.1    Annette, M.K.2    Darin, M.C.3    Gerrit, J.S.4    Michael, T.5    Michael, W.W.A.6
  • 91
    • 79953288906 scopus 로고    scopus 로고
    • Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: Construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases
    • Lipscomb G.L., Stirrett K., Schut G.J., Yang F., Jenney F.E., Scott R.A., et al. Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: Construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases. Applied and Environmental Microbiology 2011, 77:2232-2238.
    • (2011) Applied and Environmental Microbiology , vol.77 , pp. 2232-2238
    • Lipscomb, G.L.1    Stirrett, K.2    Schut, G.J.3    Yang, F.4    Jenney, F.E.5    Scott, R.A.6
  • 92
    • 84863581057 scopus 로고    scopus 로고
    • Identification and characterization of MtoA: A decaheme c-Type cytochrome of the neutrophilic Fe(II)-oxidizing bacterium Sideroxydans lithotrophicus ES-1
    • Liu J., Wang Z., Belchik S.M., Edwards M.J., Liu C., Kennedy D.W., et al. Identification and characterization of MtoA: A decaheme c-Type cytochrome of the neutrophilic Fe(II)-oxidizing bacterium Sideroxydans lithotrophicus ES-1. Frontiers in Microbiology 2012, 3:37.
    • (2012) Frontiers in Microbiology , vol.3 , pp. 37
    • Liu, J.1    Wang, Z.2    Belchik, S.M.3    Edwards, M.J.4    Liu, C.5    Kennedy, D.W.6
  • 93
    • 84858183302 scopus 로고    scopus 로고
    • Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae
    • Ljungdahl P.O., Daignan-Fornier B. Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae. Genetics 2012, 190:885-929.
    • (2012) Genetics , vol.190 , pp. 885-929
    • Ljungdahl, P.O.1    Daignan-Fornier, B.2
  • 94
    • 47649125318 scopus 로고    scopus 로고
    • Tuning gene expression to changing environments: From rapid responses to evolutionary adaptation
    • Lopez-Maury L., Marguerat S., Bahler J. Tuning gene expression to changing environments: From rapid responses to evolutionary adaptation. Nature Reviews. Genetics 2008, 9:583-593.
    • (2008) Nature Reviews. Genetics , vol.9 , pp. 583-593
    • Lopez-Maury, L.1    Marguerat, S.2    Bahler, J.3
  • 95
    • 65449146651 scopus 로고    scopus 로고
    • The Fur iron regulator-like protein is cryptic in the hyperthermophilic archaeonThermococcus kodakaraensis
    • Louvel H., Kanai T., Atomi H., Reeve J.N. The Fur iron regulator-like protein is cryptic in the hyperthermophilic archaeonThermococcus kodakaraensis. FEMS Microbiology Letters 2009, 295:117-128.
    • (2009) FEMS Microbiology Letters , vol.295 , pp. 117-128
    • Louvel, H.1    Kanai, T.2    Atomi, H.3    Reeve, J.N.4
  • 96
    • 44349164550 scopus 로고    scopus 로고
    • Dissection of the regulatory mechanism of a heat-shock responsive promoter in Haloarchaea: A new paradigm for general transcription factor directed archaeal gene regulation
    • Lu Q., Han J., Zhou L., Coker J.A., DasSarma P., DasSarma S., et al. Dissection of the regulatory mechanism of a heat-shock responsive promoter in Haloarchaea: A new paradigm for general transcription factor directed archaeal gene regulation. Nucleic Acids Research 2008, 36:3031-3042.
    • (2008) Nucleic Acids Research , vol.36 , pp. 3031-3042
    • Lu, Q.1    Han, J.2    Zhou, L.3    Coker, J.A.4    DasSarma, P.5    DasSarma, S.6
  • 97
    • 33749858625 scopus 로고    scopus 로고
    • Regulation of expression of the arabinose and glucose transporter genes in the thermophilic archaeon Sulfolobus solfataricus
    • Lubelska J.M., Jonuscheit M., Schleper C., Albers S.V., Driessen A.J. Regulation of expression of the arabinose and glucose transporter genes in the thermophilic archaeon Sulfolobus solfataricus. Extremophiles 2006, 10:383-391.
    • (2006) Extremophiles , vol.10 , pp. 383-391
    • Lubelska, J.M.1    Jonuscheit, M.2    Schleper, C.3    Albers, S.V.4    Driessen, A.J.5
  • 98
    • 0035190269 scopus 로고    scopus 로고
    • Rubrerythrin and rubredoxin oxidoreductase in Desulfovibrio vulgaris: A novel oxidative stress protection system
    • Lumppio H.L., Shenvi N.V., Summers A.O., Voordouw G., Kurtz D.M. Rubrerythrin and rubredoxin oxidoreductase in Desulfovibrio vulgaris: A novel oxidative stress protection system. Journal of Bacteriology 2001, 183:101-108.
    • (2001) Journal of Bacteriology , vol.183 , pp. 101-108
    • Lumppio, H.L.1    Shenvi, N.V.2    Summers, A.O.3    Voordouw, G.4    Kurtz, D.M.5
  • 99
    • 37549061018 scopus 로고    scopus 로고
    • Archaeal transcription: Function of an alternative transcription factor B from Pyrococcus furiosus
    • Micorescu M., Grunberg S., Franke A., Cramer P., Thomm M., Bartlett M. Archaeal transcription: Function of an alternative transcription factor B from Pyrococcus furiosus. Journal of Bacteriology 2008, 190:157-167.
    • (2008) Journal of Bacteriology , vol.190 , pp. 157-167
    • Micorescu, M.1    Grunberg, S.2    Franke, A.3    Cramer, P.4    Thomm, M.5    Bartlett, M.6
  • 100
    • 0031016808 scopus 로고    scopus 로고
    • Hydrogen regulation of growth, growth yields, and methane gene transcription in Methanobacterium thermoautotrophicum δH
    • Morgan R.M., Pihl T.D., Nölling J., Reeve J.N. Hydrogen regulation of growth, growth yields, and methane gene transcription in Methanobacterium thermoautotrophicum δH. Journal of Bacteriology 1997, 179:889-898.
    • (1997) Journal of Bacteriology , vol.179 , pp. 889-898
    • Morgan, R.M.1    Pihl, T.D.2    Nölling, J.3    Reeve, J.N.4
  • 101
  • 102
    • 0029066823 scopus 로고
    • Organization and growth phase-dependent transcription of methane genes in two regions of the Methnobacterium thermoautrophicum genome
    • Nölling J., Pihl T.D., Vriesema A., Reeve J.N. Organization and growth phase-dependent transcription of methane genes in two regions of the Methnobacterium thermoautrophicum genome. Journal of Bacteriology 1995, 177:2460-2468.
    • (1995) Journal of Bacteriology , vol.177 , pp. 2460-2468
    • Nölling, J.1    Pihl, T.D.2    Vriesema, A.3    Reeve, J.N.4
  • 103
    • 35148829988 scopus 로고    scopus 로고
    • A structural code for discriminating between transcription signals revealed by the feast/famine regulatory protein DM1 in complex with ligands
    • Okamura H., Yokoyama K., Koike H., Yamada M., Shimowasa A., Kabasawa M., et al. A structural code for discriminating between transcription signals revealed by the feast/famine regulatory protein DM1 in complex with ligands. Structure 2007, 15:1325-1338.
    • (2007) Structure , vol.15 , pp. 1325-1338
    • Okamura, H.1    Yokoyama, K.2    Koike, H.3    Yamada, M.4    Shimowasa, A.5    Kabasawa, M.6
  • 104
    • 34547531511 scopus 로고    scopus 로고
    • The order halobacteriales
    • Springer, New York, M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.)
    • Oren A. The order halobacteriales. The prokaryotes 2006, 113-164. Springer, New York. M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.).
    • (2006) The prokaryotes , pp. 113-164
    • Oren, A.1
  • 106
    • 0035863076 scopus 로고    scopus 로고
    • A thermostable platform for transcriptional regulation: The DNA-binding properties of two Lrp homologs from the hyperthermophilic archaeon Methanococcus jannaschii
    • Ouhammouch M., Geiduschek E.P. A thermostable platform for transcriptional regulation: The DNA-binding properties of two Lrp homologs from the hyperthermophilic archaeon Methanococcus jannaschii. EMBO Journal 2001, 20:146-155.
    • (2001) EMBO Journal , vol.20 , pp. 146-155
    • Ouhammouch, M.1    Geiduschek, E.P.2
  • 107
    • 66949142420 scopus 로고    scopus 로고
    • The crenarchaeal DNA damage-inducible transcription factor B paralogue TFB3 is a general activator of transcription
    • Paytubi S., White M.F. The crenarchaeal DNA damage-inducible transcription factor B paralogue TFB3 is a general activator of transcription. Molecular Microbiology 2009, 72:1487-1499.
    • (2009) Molecular Microbiology , vol.72 , pp. 1487-1499
    • Paytubi, S.1    White, M.F.2
  • 108
    • 79251535005 scopus 로고    scopus 로고
    • The Lrp family of transcription regulators in Archaea
    • Peeters E., Charlier D. The Lrp family of transcription regulators in Archaea. Archaea 2010, 2010:750457.
    • (2010) Archaea , vol.2010 , pp. 750457
    • Peeters, E.1    Charlier, D.2
  • 110
    • 84871952729 scopus 로고    scopus 로고
    • Structure and function of AvtR, a novel transcriptional regulator from a hyperthermophilic archaeal lipothrixvirus
    • Peixeiro N., Keller J., Collinet B., Leulliot N., Campanacci V., Cortez D., et al. Structure and function of AvtR, a novel transcriptional regulator from a hyperthermophilic archaeal lipothrixvirus. Journal of Virology 2013, 87:124-136.
    • (2013) Journal of Virology , vol.87 , pp. 124-136
    • Peixeiro, N.1    Keller, J.2    Collinet, B.3    Leulliot, N.4    Campanacci, V.5    Cortez, D.6
  • 111
    • 79551483054 scopus 로고    scopus 로고
    • Archaeal promoter architecture and mechanism of gene activation
    • Peng N., Ao X., Liang Y.X., She Q. Archaeal promoter architecture and mechanism of gene activation. Biochemical Society Transactions 2011, 39:99-103.
    • (2011) Biochemical Society Transactions , vol.39 , pp. 99-103
    • Peng, N.1    Ao, X.2    Liang, Y.X.3    She, Q.4
  • 112
    • 24944453275 scopus 로고    scopus 로고
    • Structural determinants of metal selectivity in prokaryotic metal-responsive transcriptional regulators
    • Pennella M.A., Giedroc D.P. Structural determinants of metal selectivity in prokaryotic metal-responsive transcriptional regulators. BioMetals 2005, 18:413-428.
    • (2005) BioMetals , vol.18 , pp. 413-428
    • Pennella, M.A.1    Giedroc, D.P.2
  • 113
    • 77952805130 scopus 로고    scopus 로고
    • Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin
    • Perez-Rueda E., Janga S.C. Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin. Molecular and Biological Evolution 2010, 27:1449-1459.
    • (2010) Molecular and Biological Evolution , vol.27 , pp. 1449-1459
    • Perez-Rueda, E.1    Janga, S.C.2
  • 115
    • 0027993193 scopus 로고
    • 5-methyletetrahydromethanopterin: Coenzyme M methyltransferase in Methanobacterium thermoautotrophicum δH
    • 5-methyletetrahydromethanopterin: Coenzyme M methyltransferase in Methanobacterium thermoautotrophicum δH. Journal of Bacteriology 1994, 176:6384-6391.
    • (1994) Journal of Bacteriology , vol.176 , pp. 6384-6391
    • Pihl, T.D.1    Sharma, S.2    Reeve, J.N.3
  • 116
    • 1642364959 scopus 로고    scopus 로고
    • Development of a markerless genetic exchange method for Methanosarcina acetivorans C2A and its use in construction of new genetic tools for methanogenic Archaea
    • Pritchett M.A., Zhang J.K., Metcalf W.W. Development of a markerless genetic exchange method for Methanosarcina acetivorans C2A and its use in construction of new genetic tools for methanogenic Archaea. Applied and Environmental Microbiology 2004, 70:1425-1433.
    • (2004) Applied and Environmental Microbiology , vol.70 , pp. 1425-1433
    • Pritchett, M.A.1    Zhang, J.K.2    Metcalf, W.W.3
  • 117
    • 78649355323 scopus 로고    scopus 로고
    • GlpR represses fructose and glucose metabolic enzymes at the level of transcription in the haloarchaeon Haloferax volcanii
    • Rawls K.S., Yacovone S.K., Maupin-Furlow J.A. GlpR represses fructose and glucose metabolic enzymes at the level of transcription in the haloarchaeon Haloferax volcanii. Journal of Bacteriology 2010, 192:6251-6260.
    • (2010) Journal of Bacteriology , vol.192 , pp. 6251-6260
    • Rawls, K.S.1    Yacovone, S.K.2    Maupin-Furlow, J.A.3
  • 118
    • 84865715263 scopus 로고    scopus 로고
    • MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivorans
    • e00189-12
    • Reichlen M.J., Vepachedu V.R., Murakami K.S., Ferry J.G. MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivorans. mBio 2012, 3:e00189-12.
    • (2012) mBio , vol.3
    • Reichlen, M.J.1    Vepachedu, V.R.2    Murakami, K.S.3    Ferry, J.G.4
  • 119
    • 84867092074 scopus 로고    scopus 로고
    • Regulation of archaella expression by the FHA and von Willebrand domain-containing proteins ArnA and ArnB in Sulfolobus acidocaldarius
    • Reimann J., Lassak K., Khadouma S., Ettema T.J., Yang N., Driessen A.J., et al. Regulation of archaella expression by the FHA and von Willebrand domain-containing proteins ArnA and ArnB in Sulfolobus acidocaldarius. Molecular Microbiology 2012, 86:24-36.
    • (2012) Molecular Microbiology , vol.86 , pp. 24-36
    • Reimann, J.1    Lassak, K.2    Khadouma, S.3    Ettema, T.J.4    Yang, N.5    Driessen, A.J.6
  • 120
    • 1642453651 scopus 로고    scopus 로고
    • Transcription factor B contacts promoter DNA near the transcription start site of the archaeal transcription initiation complex
    • Renfrow M.B., Naryshkin N., Lewis L.M., Chen H.T., Ebright R.H., Scott R.A. Transcription factor B contacts promoter DNA near the transcription start site of the archaeal transcription initiation complex. Journal of Biological Chemistry 2004, 279:2825-2831.
    • (2004) Journal of Biological Chemistry , vol.279 , pp. 2825-2831
    • Renfrow, M.B.1    Naryshkin, N.2    Lewis, L.M.3    Chen, H.T.4    Ebright, R.H.5    Scott, R.A.6
  • 123
    • 33847118046 scopus 로고    scopus 로고
    • TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro
    • Santangelo T.J., Čuboňová L., James C.L., Reeve J.N. TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro. Journal of Molecular Biology 2007, 367:344-357.
    • (2007) Journal of Molecular Biology , vol.367 , pp. 344-357
    • Santangelo, T.J.1    Čuboňová, L.2    James, C.L.3    Reeve, J.N.4
  • 124
    • 44249097297 scopus 로고    scopus 로고
    • Shuttle vector expression in Thermococcus kodakaraensis: Contributions of cis elements to protein synthesis in a hyperthermophilic archaeon
    • Santangelo T.J., Cubonova L.u., Reeve J.N. Shuttle vector expression in Thermococcus kodakaraensis: Contributions of cis elements to protein synthesis in a hyperthermophilic archaeon. Applied and Environmental Microbiology 2008, 74:3099-3104.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 3099-3104
    • Santangelo, T.J.1    Cubonova, L.2    Reeve, J.N.3
  • 125
    • 76649127737 scopus 로고    scopus 로고
    • Thermococcus kodakarensis genetics: TK1827-encoded beta-glycosidase, new positive-selection protocol, and targeted and repetitive deletion technology
    • Santangelo T.J., Cubonova L., Reeve J.N. Thermococcus kodakarensis genetics: TK1827-encoded beta-glycosidase, new positive-selection protocol, and targeted and repetitive deletion technology. Applied and Environmental Microbiology 2010, 76:1044-1052.
    • (2010) Applied and Environmental Microbiology , vol.76 , pp. 1044-1052
    • Santangelo, T.J.1    Cubonova, L.2    Reeve, J.N.3
  • 126
    • 28844477575 scopus 로고    scopus 로고
    • Archaeal RNA polymerase is sensitive to intrinsic termination directed by transcribed and remote sequences
    • Santangelo T.J., Reeve J.N. Archaeal RNA polymerase is sensitive to intrinsic termination directed by transcribed and remote sequences. Journal of Molecular Biology 2006, 355:196-210.
    • (2006) Journal of Molecular Biology , vol.355 , pp. 196-210
    • Santangelo, T.J.1    Reeve, J.N.2
  • 128
    • 34247270313 scopus 로고    scopus 로고
    • GvpD-induced breakdown of the transcriptional activator GvpE of halophilic archaea requires a functional p-loop and an arginine-rich region of GvpD
    • Scheuch S., Pfeifer F. GvpD-induced breakdown of the transcriptional activator GvpE of halophilic archaea requires a functional p-loop and an arginine-rich region of GvpD. Microbiology 2007, 153:947-958.
    • (2007) Microbiology , vol.153 , pp. 947-958
    • Scheuch, S.1    Pfeifer, F.2
  • 129
    • 0037337551 scopus 로고    scopus 로고
    • AraC protein: A love-hate relationship
    • Schleif R. AraC protein: A love-hate relationship. Bioessays 2003, 25:274-282.
    • (2003) Bioessays , vol.25 , pp. 274-282
    • Schleif, R.1
  • 130
    • 79954595668 scopus 로고    scopus 로고
    • Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon
    • Schmid A.K., Pan M., Sharma K., Baliga N.S. Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon. Nucleic Acids Research 2011, 39:2519-2533.
    • (2011) Nucleic Acids Research , vol.39 , pp. 2519-2533
    • Schmid, A.K.1    Pan, M.2    Sharma, K.3    Baliga, N.S.4
  • 131
    • 67650818533 scopus 로고    scopus 로고
    • A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability
    • Schmid A.K., Reiss D.J., Pan M., Koide T., Baliga N.S. A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability. Molecular Systems Biology 2009, 5:282.
    • (2009) Molecular Systems Biology , vol.5 , pp. 282
    • Schmid, A.K.1    Reiss, D.J.2    Pan, M.3    Koide, T.4    Baliga, N.S.5
  • 135
    • 84864333407 scopus 로고    scopus 로고
    • The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon
    • Sharma K., Gillum N., Boyd J., Schmid A. The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon. BMC Genomics 2012, 13:351.
    • (2012) BMC Genomics , vol.13 , pp. 351
    • Sharma, K.1    Gillum, N.2    Boyd, J.3    Schmid, A.4
  • 137
    • 15644383855 scopus 로고    scopus 로고
    • Complete genome sequence of Methanobacterium thermoautotrophicum δH: Functional analysis and comparative genomics
    • Smith D.R., Doucette-Stamm L.A., Deloughery C., Lee H., Dubois J., Aldredge T., et al. Complete genome sequence of Methanobacterium thermoautotrophicum δH: Functional analysis and comparative genomics. Journal of Bacteriology 1997, 179:7135-7155.
    • (1997) Journal of Bacteriology , vol.179 , pp. 7135-7155
    • Smith, D.R.1    Doucette-Stamm, L.A.2    Deloughery, C.3    Lee, H.4    Dubois, J.5    Aldredge, T.6
  • 138
    • 0033052407 scopus 로고    scopus 로고
    • Transcription initiation in Archaea: Facts, factors and future aspects
    • Soppa J. Transcription initiation in Archaea: Facts, factors and future aspects. Molecular Microbiology 1999, 31:1295-1305.
    • (1999) Molecular Microbiology , vol.31 , pp. 1295-1305
    • Soppa, J.1
  • 141
    • 76949083613 scopus 로고    scopus 로고
    • Interaction of transcription activator GvpE with TATA-box-binding proteins of Halobacterium salinarum
    • Teufel K., Pfeifer F. Interaction of transcription activator GvpE with TATA-box-binding proteins of Halobacterium salinarum. Archives of Microbiology 2010, 192:143-149.
    • (2010) Archives of Microbiology , vol.192 , pp. 143-149
    • Teufel, K.1    Pfeifer, F.2
  • 142
    • 0031973963 scopus 로고    scopus 로고
    • Heat shock inducibility of an archaeal TATA-like promoter is controlled by adjacent sequence elements
    • Thompson D., Daniels C.J. Heat shock inducibility of an archaeal TATA-like promoter is controlled by adjacent sequence elements. Molecular Microbiology 1998, 27:541-551.
    • (1998) Molecular Microbiology , vol.27 , pp. 541-551
    • Thompson, D.1    Daniels, C.J.2
  • 143
    • 84885909649 scopus 로고    scopus 로고
    • Protein-DNA binding dynamics predict transcriptional response to nutrients in archaea
    • Todor H., Sharma K., Pittman A.M.C., Schmid A.K. Protein-DNA binding dynamics predict transcriptional response to nutrients in archaea. Nucleic Acids Research 2013, 41:8546-8558.
    • (2013) Nucleic Acids Research , vol.41 , pp. 8546-8558
    • Todor, H.1    Sharma, K.2    Pittman, A.M.C.3    Schmid, A.K.4
  • 145
    • 84886257275 scopus 로고    scopus 로고
    • Sa-Lrp from Sulfolobus acidocaldarius is a versatile, glutamine-responsive, and architectural transcriptional regulator
    • Vassart A., Van Wolferen M., Orell A., Hong Y., Peeters E., Albers S.-V., et al. Sa-Lrp from Sulfolobus acidocaldarius is a versatile, glutamine-responsive, and architectural transcriptional regulator. MicrobiologyOpen 2013, 2:75-93.
    • (2013) MicrobiologyOpen , vol.2 , pp. 75-93
    • Vassart, A.1    Van Wolferen, M.2    Orell, A.3    Hong, Y.4    Peeters, E.5    Albers, S.-V.6
  • 148
    • 80053444741 scopus 로고    scopus 로고
    • CopR of Sulfolobus solfataricus represents a novel class of archaeal-specific copper-responsive activators of transcription
    • Villafane A., Voskoboynik Y., Ruhl I., Sannino D., Maezato Y., Blum P., et al. CopR of Sulfolobus solfataricus represents a novel class of archaeal-specific copper-responsive activators of transcription. Microbiology 2011, 157:2808-2817.
    • (2011) Microbiology , vol.157 , pp. 2808-2817
    • Villafane, A.1    Voskoboynik, Y.2    Ruhl, I.3    Sannino, D.4    Maezato, Y.5    Blum, P.6
  • 150
    • 79952113624 scopus 로고    scopus 로고
    • NrpRII mediates contacts between NrpRI and general transcription factors in the archaeon Methanosarcina mazei Go1
    • Weidenbach K., Ehlers C., Kock J., Schmitz R.A. NrpRII mediates contacts between NrpRI and general transcription factors in the archaeon Methanosarcina mazei Go1. The FEBS Journal 2010, 277:4398-4411.
    • (2010) The FEBS Journal , vol.277 , pp. 4398-4411
    • Weidenbach, K.1    Ehlers, C.2    Kock, J.3    Schmitz, R.A.4
  • 152
    • 35148814913 scopus 로고    scopus 로고
    • The methanogenic bacteria
    • Springer, New York, M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.)
    • Whitman W.B., Bowen T.L., Boone D.R. The methanogenic bacteria. The prokaryotes 2006, 165-207. Springer, New York. M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.).
    • (2006) The prokaryotes , pp. 165-207
    • Whitman, W.B.1    Bowen, T.L.2    Boone, D.R.3
  • 153
    • 78149422245 scopus 로고    scopus 로고
    • Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR
    • Wisedchaisri G., Dranow D.M., Lie T.J., Bonanno J.B., Patskovsky Y., Ozyurt S.A., et al. Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR. Structure 2010, 18:1512-1521.
    • (2010) Structure , vol.18 , pp. 1512-1521
    • Wisedchaisri, G.1    Dranow, D.M.2    Lie, T.J.3    Bonanno, J.B.4    Patskovsky, Y.5    Ozyurt, S.A.6
  • 155
    • 84930242847 scopus 로고    scopus 로고
    • The archaea: A personal overview of the formative years
    • Springer, New York, M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.)
    • Wolfe R.S. The archaea: A personal overview of the formative years. The prokaryotes 2006, 3-9. Springer, New York. M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.).
    • (2006) The prokaryotes , pp. 3-9
    • Wolfe, R.S.1
  • 156
    • 24944442512 scopus 로고    scopus 로고
    • Regulation of tryptophan operon expression in the archaeon Methanothermobacter thermoautotrophicus
    • Xie Y., Reeve J.N. Regulation of tryptophan operon expression in the archaeon Methanothermobacter thermoautotrophicus. Journal of Bacteriology 2005, 187:6419-6429.
    • (2005) Journal of Bacteriology , vol.187 , pp. 6419-6429
    • Xie, Y.1    Reeve, J.N.2
  • 157
    • 77956136587 scopus 로고    scopus 로고
    • SurR regulates hydrogen production in Pyrococcus furiosus by a sulfur-dependent redox switch
    • Yang H., Lipscomb G.L., Keese A.M., Schut G.J., Thomm M., Adams M.W.W., et al. SurR regulates hydrogen production in Pyrococcus furiosus by a sulfur-dependent redox switch. Molecular Microbiology 2010, 77:1111-1122.
    • (2010) Molecular Microbiology , vol.77 , pp. 1111-1122
    • Yang, H.1    Lipscomb, G.L.2    Keese, A.M.3    Schut, G.J.4    Thomm, M.5    Adams, M.W.W.6
  • 158
    • 36749036126 scopus 로고    scopus 로고
    • Feast/famine regulation by transcription factor FL11 for the survival of the hyperthermophilic archaeon Pyrococcus OT3
    • Yokoyama K., Ishijima S.A., Koike H., Kurihara C., Shimowasa A., Kabasawa M., et al. Feast/famine regulation by transcription factor FL11 for the survival of the hyperthermophilic archaeon Pyrococcus OT3. Structure 2007, 15:1542-1554.
    • (2007) Structure , vol.15 , pp. 1542-1554
    • Yokoyama, K.1    Ishijima, S.A.2    Koike, H.3    Kurihara, C.4    Shimowasa, A.5    Kabasawa, M.6
  • 159
    • 68049084862 scopus 로고    scopus 로고
    • The DNA-recognition mode shared by archaeal feast/famine-regulatory proteins revealed by the DNA-binding specificities of TvFL3, FL10, FL11 and Ss-LrpB
    • Yokoyama K., Nogami H., Kabasawa M., Ebihara S., Shimowasa A., Hashimoto K., et al. The DNA-recognition mode shared by archaeal feast/famine-regulatory proteins revealed by the DNA-binding specificities of TvFL3, FL10, FL11 and Ss-LrpB. Nucleic Acids Research 2009, 37:4407-4419.
    • (2009) Nucleic Acids Research , vol.37 , pp. 4407-4419
    • Yokoyama, K.1    Nogami, H.2    Kabasawa, M.3    Ebihara, S.4    Shimowasa, A.5    Hashimoto, K.6
  • 161
    • 0041663975 scopus 로고    scopus 로고
    • Regulation of the expression of gas vesicle genes in Haloferax mediterranei: Interaction of the two regulatory proteins GvpD and GvpE
    • Zimmermann P., Pfeifer F. Regulation of the expression of gas vesicle genes in Haloferax mediterranei: Interaction of the two regulatory proteins GvpD and GvpE. Molecular Microbiology 2003, 49:783-794.
    • (2003) Molecular Microbiology , vol.49 , pp. 783-794
    • Zimmermann, P.1    Pfeifer, F.2


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