Structure, function, and targets of the transcriptional regulator SvtR from the hyperthermophilic archaeal virus SIRV1

Journal of Biological Chemistry

Volumn 284, Issue 33, 2009, Pages 22222-22237

  Guillière, Florence ^a   Peixeiro, Nuno ^b   Kessler, Alexandra ^b   Raynal, Bertrand ^b   Desnoues, Nicole ^b   Keller, Jenny ^c   Delepierre, Muriel ^a   Prangishvili, David ^b   Sezonov, Guennadi ^b,d   Guijarro, J Iñaki ^a,b  

^a CNRS   (France)

^b INSTITUT PASTEUR   (France)

^c INSTITUTE FOR INTEGRATIVE BIOLOGY OF THE CELL I2BC   (France)

^d SORBONNE UNIVERSITÉ   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL; ELECTROPHORETIC MOBILITY SHIFT ASSAY; GENE CODING; HYPERTHERMOPHILIC; HYPERTHERMOPHILIC ARCHAEON; IN-VITRO; N-TERMINALS; PROTEIN BINDS; ROD-SHAPED; SEQUENCE SIMILARITY; SOLUTION STRUCTURES; STRUCTURAL PROTEINS; TRANSCRIPTIONAL REGULATOR;

BINDING ENERGY; BINDING SITES; ELECTROPHORETIC MOBILITY; NUCLEIC ACIDS; TARGETS;

TRANSCRIPTION;

REGULATOR PROTEIN; SULFOLOBUS VIRUS TRANSCRIPTION REGULATOR PROTEIN; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; BETA SHEET; BINDING SITE; CONTROLLED STUDY; GEL MOBILITY SHIFT ASSAY; HYPERTHERMOPHILIC ARCHAEON; IN VITRO STUDY; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN ANALYSIS; PROTEIN DNA BINDING; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN STRUCTURE; PROTEIN TARGETING; RUDIVIRIDAE; SEQUENCE HOMOLOGY; SULFOLOBUS; SULFOLOBUS ISLANDICUS; SULFOLOBUS ISLANDICUS ROD SHAPED VIRUS 1; TRANSCRIPTION REGULATION;

BASE SEQUENCE; BINDING SITES; CLONING, MOLECULAR; DIMERIZATION; GENE EXPRESSION REGULATION, VIRAL; MOLECULAR CONFORMATION; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; RUDIVIRIDAE; STRUCTURE-ACTIVITY RELATIONSHIP; SULFOLOBUS; TRANSCRIPTION, GENETIC; VIRAL PROTEINS;

ARCHAEA; BACTERIA (MICROORGANISMS); SULFOLOBUS; SULFOLOBUS ISLANDICUS;

EID: 69249132878     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.029850     Document Type: Article

References (72)

1. Torsvik, T., and Dundas, I. D. (1974) Nature 248, 680-681
2. Prangishvili, D., Stedman, K., and Zillig, W. (2001) Trends Microbiol. 9, 39-43
3. Prangishvili, D., and Garrett, R. A. (2004) Biochem. Soc. Trans. 32, 204-208
4. Prangishvili, D., Forterre, P., and Garrett, R. A. (2006) Nat. Rev. Microbiol. 4, 837-848
5. Prangishvili, D., Garrett, R. A., and Koonin, E. V. (2006) Virus Res. 117, 52-67
6. Blum, H., Zillig, W., Mallok, S., Domdey, H., and Prangishvili, D. (2001) Virology 281, 6-9
7. Peng, X., Blum, H., She, Q., Mallok, S., Brügger, K., Garrett, R. A., Zillig, W., and Prangishvili, D. (2001) Virology 291, 226-234
8. Vestergaard, G., Shah, S. A., Bize, A., Reitberger, W., Reuter, M., Phan, H., Briegel, A., Rachel, R., Garrett, R. A., and Prangishvili, D. (2008) J. Bacteriol. 190, 6837-6845
9. Vestergaard, G., Häring, M., Peng, X., Rachel, R., Garrett, R. A., and Prangishvili, D. (2005) Virology 336, 83-92
10. Lawrence, C. M., Menon, S., Eilers, B. J., Bothner, B., Khayat, R., Douglas, T., and Young, M. J. (2009) J. Biol. Chem. 284, 12599-12603
11. Kessler, A., Brinkman, A. B., van der Oost, J., and Prangishvili, D. (2004) J. Bacteriol. 186, 7745-7753
12. Peng, X., Kessler, A., Phan, H., Garrett, R. A., and Prangishvili, D. (2004) Mol. Microbiol. 54, 366-375
13. Kessler, A., Sezonov, G., Guijarro, J. I., Desnoues, N., Rose, T., Delepierre, M., Bell, S. D., and Prangishvili, D. (2006) Nucleic Acids Res. 34, 4837-4845
14. Hirata, A., Klein, B. J., and Murakami, K. S. (2008) Nature 451, 851-854
15. Bell, S. D. (2005) Trends Microbiol. 13, 262-265
16. Arnold, H. P., Zillig, W., Ziese, U., Holz, I., Crosby, M., Utterback, T., Weidmann, J. F., Kristjanson, J. K., Klenk, H. P., Nelson, K. E., and Fraser, C. M. (2000) Virology 267, 252-266
17. Abella, M., Rodríguez, S., Paytubi, S., Campoy, S., White, M. F., and Barbé, J. (2007) Nucleic Acids Res. 35, 6788-6797
18. Qureshi, S. A., Bell, S. D., and Jackson, S. P. (1997) EMBO J. 16, 2927-2936
19. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 277-293
20. Johnson, B. A., and Blevins, R. A. (1994) J. Biomol. NMR 4, 603-614
21. Griesinger, C., Otting, G., Wüthrich, K., and Ernst, R. R. (1988) J. Am. Chem. Soc. 110, 7870-7872
22. Marion, D., and Bax, A. (1988) J. Magn. Reson. 80, 528-533
23. Kay, L. E., Keifer, P., and Saarinen, T. (1992) J. Am. Chem. Soc. 114, 10663-10665
24. Muhandiram, D. R., and Kay, L. E. (1994) J. Magn. Reson. 103, 203-216
25. Grzesiek, S., Anglister, J., and Bax, A. (1993) J. Magn. Reson. 101, 114-119
26. Logan, T. M., Olejniczak, E. T., Xu, R. X., and Fesik, S. W. (1993) J. Biomol. NMR 3, 225-231
27. Kay, L. E., Xu, G., Singer, A. U., Muhandiram, D. R., and Forman-Kay, J. D. (1993) J. Magn. Reson. 101, 333-337
28. Zhang, O., Kay, L. E., Olivier, J. P., and Forman-Kay, J. D. (1994) J. Biomol. NMR 4, 845-858
29. Yamazaki, T., Forman-Kay, J. D., and Kay, L. E. (1993) J. Am. Chem. Soc. 115, 11054-11055
30. Farrow, N. A., Muhandiram, R., Singer, A. U., Pascal, S. M., Kay, C. M., Gish, G., Shoelson, S. E., Pawson, T., Forman-Kay, J. D., and Kay, L. E. (1994) Biochemistry 33, 5984-6003
31. Mandel, A. M., Akke, M., and Palmer, A. G., 3rd. (1995) J. Mol. Biol. 246, 144-163
32. Palmer, A. G., Rance, M., and Wright, P. E. (1991) J. Am. Chem. Soc. 113, 4371-4380
33. Pelta, M. D., Barjat, H., Morris, G. A., and Davis, A. L. (1998) Magn. Reson. Chem. 36, 706-714
34. Jerschow, A., and Müller, N. (1997) J. Magn. Reson. 125, 372-375
35. Wilkins, D. K., Grimshaw, S. B., Receveur, V., Dobson, C. M., Jones, J. A., and Smith, L. J. (1999) Biochemistry 38, 16424-16431
36. States, D. J., Haberkorn, R. A., and Ruben, D. J. (1982) J. Magn. Reson. 48, 286-292
37. Zwahlen, C., Legault, P., Vincent, S. J. F., Greenblatt, J., Konrat, R., and Kay, L. E. (1997) J. Am. Chem. Soc. 119, 6711-6721
38. Vuister, G. W., and Bax, A. (1993) J. Am. Chem. Soc. 115, 7772-7777
39. Grzesiek, S., Kuboniwa, H., Hinck, A. P., and Bax, A. (1995) J. Am. Chem. Soc. 117, 5312-5315
40. Nilges, M., Macias, M. J., O'Donoghue, S. I., and Oschkinat, H. (1997) J. Mol. Biol. 269, 408-422
41. Rieping, W., Habeck, M., Bardiaux, B., Bernard, A., Malliavin, T. E., and Nilges, M. (2007) Bioinformatics 23, 381-382
42. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. D Biol. Crystallogr. 54, 905-921
43. Linge, J. P., Habeck, M., Rieping, M., and Nilges, M. (2003) Prot. Struct. Funct. Genet. 50, 496-506
44. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
45. Hooft, R. W., Vriend, G., Sander, C., and Abola, E. E. (1996) Nature 381, 272
46. Koradi, R., Billeter, M., and Wüthrich, K. (1996) J. Mol. Graphics 14, 51-55
47. Demeler, B. (2005) in Modern Analytical Ultracentrifugation: Techniques and Methods (Scott, D. J., Harding, S. E., and Rowe, A. J., eds) pp. 210-229, Royal Society of Chemistry, UK
48. Brown, P. H., and Schuck, P. (2006) Biophys. J. 90, 4651-4661
49. Berjanskii, M. V., and Wishart, D. S. (2005) J. Am. Chem. Soc. 127, 14970-14971
50. Holm, L., and Sander, C. (1993) J. Mol. Biol. 233, 123-138
51. Shindyalov, I. N., and Bourne, P. E. (1998) Protein Eng. 11, 739-747
52. Gomis-Rüth, F. X., Solá, M., Acebo, P., Párraga, A., Guasch, A., Eritja, R., González, A., Espinosa, M., del Solar, G., and Coll, M. (1998) EMBO J. 17, 7404-7415
53. Schildbach, J. F., Karzai, A. W., Raumann, B. E., and Sauer, R. T. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 811-817
54. Schreiter, E. R., Sintchak, M. D., Guo, Y., Chivers, P. T., Sauer, R. T., and Drennan, C. L. (2003) Nat. Struct. Biol. 10, 794-799
55. Golovanov, A. P., Barillà, D., Golovanova, M., Hayes, F., and Lian, L. Y. (2003) Mol. Microbiol. 50, 1141-1153
56. Murayama, K., Orth, P., de la Hoz, A. B., Alonso, J. C., and Saenger, W. (2001) J. Mol. Biol. 314, 789-796
57. Popescu, A., Karpay, A., Israel, D. A., Peek, R. M. Jr., and Krezel, A. M. (2005) Proteins 59, 303-311
58. Garvie, C. W., and Phillips, S. E. (2000) Structure 8, 905-914
59. Mattison, K., Wilbur, J. S., So, M., and Brennan, R. G. (2006) J. Biol. Chem. 281, 37942-37951
60. Larson, J. D., Jenkins, J. L., Schuermann, J. P., Zhou, Y., Becker, D. F., and Tanner, J. J. (2006) Protein Sci. 15, 2630-2641
61. Lipps, G., Stegert, M., and Krauss, G. (2001) Nucleic Acids Res. 29, 904-913
62. Schreiter, E. R., and Drennan, C. L. (2007) Nat. Rev. Microbiol. 5, 710-720
63. Somers, W. S., and Phillips, S. E. (1992) Nature 359, 387-393
64. Zeeb, M., Lipps, G., Lilie, H., and Balbach, J. (2004) J. Mol. Biol. 336, 227-240
65. Lipps, G. (2004) Biochem. Soc. Trans. 32, 240-244
66. Berkner, S., and Lipps, G. (2007) J. Bacteriol. 189, 1711-1721
67. Weihofen, W. A., Cicek, A., Pratto, F., Alonso, J. C., and Saenger, W. (2006) Biochem. Soc. Trans. 34, 1450-1458
68. Schreiter, E. R., Wang, S. C., Zamble, D. B., and Drennan, C. L. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 13676-13681
69. Elcock, A. H. (1998) J. Mol. Biol. 284, 489-502
70. Robinson-Rechavi, M., Alibés, A., and Godzik, A. (2006) J. Mol. Biol. 356, 547-557
71. Peterson, S. N., Dahlquist, F. W., and Reich, N. O. (2007) J. Mol. Biol. 369, 1307-1317
72. Steinmetz, N. F., Bize, A., Findlay, K. C., Lomonossoff, G. P., Manchester, M., Evans, D. J., and Prangishvili, D. (2008) Adv. Funct. Materials 18, 3478-3486