-
1
-
-
0029043298
-
Transcription: new insights from studies on Archaea
-
Baumann P., Qureshi S.A., and Jackson S.P. Transcription: new insights from studies on Archaea. Trends Genet. 11 (1995) 279-283
-
(1995)
Trends Genet.
, vol.11
, pp. 279-283
-
-
Baumann, P.1
Qureshi, S.A.2
Jackson, S.P.3
-
4
-
-
33645771210
-
Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA
-
Grigorova I.L., Phleger N.J., Mutalik V.K., and Gross C.A. Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA. Proc. Natl Acad. Sci. USA 103 (2006) 5332-5337
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 5332-5337
-
-
Grigorova, I.L.1
Phleger, N.J.2
Mutalik, V.K.3
Gross, C.A.4
-
5
-
-
0032489504
-
Protein-protein contacts that activate and repress prokaryotic transcription
-
Hochschild A., and Dove S.L. Protein-protein contacts that activate and repress prokaryotic transcription. Cell 92 (1998) 597-600
-
(1998)
Cell
, vol.92
, pp. 597-600
-
-
Hochschild, A.1
Dove, S.L.2
-
6
-
-
33747881750
-
The general transcription machinery and general cofactors
-
Thomas M.C., and Chiang C.M. The general transcription machinery and general cofactors. Crit. Rev. Biochem. Mol. Biol. 41 (2006) 105-178
-
(2006)
Crit. Rev. Biochem. Mol. Biol.
, vol.41
, pp. 105-178
-
-
Thomas, M.C.1
Chiang, C.M.2
-
7
-
-
0034724953
-
Architecture of RNA polymerase II and implications for the transcription mechanism
-
Cramer P., Bushnell D.A., Fu J., Gnatt A.L., Maier-Davis B., Thompson N.E., et al. Architecture of RNA polymerase II and implications for the transcription mechanism. Science 288 (2000) 640-649
-
(2000)
Science
, vol.288
, pp. 640-649
-
-
Cramer, P.1
Bushnell, D.A.2
Fu, J.3
Gnatt, A.L.4
Maier-Davis, B.5
Thompson, N.E.6
-
9
-
-
20344386725
-
Archaeal transcription and its regulators
-
Geiduschek E.P., and Ouhammouch M. Archaeal transcription and its regulators. Mol. Microbiol. 56 (2005) 1397-1407
-
(2005)
Mol. Microbiol.
, vol.56
, pp. 1397-1407
-
-
Geiduschek, E.P.1
Ouhammouch, M.2
-
10
-
-
0035067057
-
Mechanism and regulation of transcription in archaea
-
Bell S.D., and Jackson S.P. Mechanism and regulation of transcription in archaea. Curr. Opin. Microbiol. 4 (2001) 208-213
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 208-213
-
-
Bell, S.D.1
Jackson, S.P.2
-
11
-
-
24344504002
-
Direct modulation of RNA polymerase core functions by basal transcription factors
-
Werner F., and Weinzierl R.O. Direct modulation of RNA polymerase core functions by basal transcription factors. Mol. Cell Biol. 25 (2005) 8344-8355
-
(2005)
Mol. Cell Biol.
, vol.25
, pp. 8344-8355
-
-
Werner, F.1
Weinzierl, R.O.2
-
12
-
-
0035116309
-
TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEalpha
-
Hanzelka B.L., Darcy T.J., and Reeve J.N. TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEalpha. J. Bacteriol. 183 (2001) 1813-1818
-
(2001)
J. Bacteriol.
, vol.183
, pp. 1813-1818
-
-
Hanzelka, B.L.1
Darcy, T.J.2
Reeve, J.N.3
-
13
-
-
0034745386
-
The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition
-
Bell S.D., Brinkman A.B., van der Oost J., and Jackson S.P. The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition. EMBO Rep. 2 (2001) 133-138
-
(2001)
EMBO Rep.
, vol.2
, pp. 133-138
-
-
Bell, S.D.1
Brinkman, A.B.2
van der Oost, J.3
Jackson, S.P.4
-
14
-
-
8744235102
-
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
-
Baliga N.S., Bonneau R., Facciotti M.T., Pan M., Glusman G., Deutsch E.W., et al. Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Res. 14 (2004) 2221-2234
-
(2004)
Genome Res.
, vol.14
, pp. 2221-2234
-
-
Baliga, N.S.1
Bonneau, R.2
Facciotti, M.T.3
Pan, M.4
Glusman, G.5
Deutsch, E.W.6
-
15
-
-
0034077514
-
Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors?
-
Baliga N.S., Goo Y.A., Ng W.V., Hood L., Daniels C.J., and DasSarma S. Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors?. Mol. Microbiol. 36 (2000) 1184-1185
-
(2000)
Mol. Microbiol.
, vol.36
, pp. 1184-1185
-
-
Baliga, N.S.1
Goo, Y.A.2
Ng, W.V.3
Hood, L.4
Daniels, C.J.5
DasSarma, S.6
-
16
-
-
12944270421
-
Genome sequence of Halobacterium species NRC-1
-
Ng W.V., Kennedy S.P., Mahairas G.G., Berquist B., Pan M., Shukla H.D., et al. Genome sequence of Halobacterium species NRC-1. Proc. Natl Acad. Sci. USA 97 (2000) 12176-12181
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 12176-12181
-
-
Ng, W.V.1
Kennedy, S.P.2
Mahairas, G.G.3
Berquist, B.4
Pan, M.5
Shukla, H.D.6
-
17
-
-
2442679707
-
Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1
-
Goo Y.A., Yi E.C., Baliga N.S., Tao W.A., Pan M., Aebersold R., et al. Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Mol. Cell Proteom. 2 (2003) 506-524
-
(2003)
Mol. Cell Proteom.
, vol.2
, pp. 506-524
-
-
Goo, Y.A.1
Yi, E.C.2
Baliga, N.S.3
Tao, W.A.4
Pan, M.5
Aebersold, R.6
-
18
-
-
0032779428
-
Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro
-
Darcy T.J., Hausner W., Awery D.E., Edwards A.M., Thomm M., and Reeve J.N. Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro. J. Bacteriol. 181 (1999) 4424-4429
-
(1999)
J. Bacteriol.
, vol.181
, pp. 4424-4429
-
-
Darcy, T.J.1
Hausner, W.2
Awery, D.E.3
Edwards, A.M.4
Thomm, M.5
Reeve, J.N.6
-
19
-
-
0027437625
-
Purification and characterization of a general transcription factor, aTFB, from the archaeon Methanococcus thermolithotrophicus
-
Hausner W., and Thomm M. Purification and characterization of a general transcription factor, aTFB, from the archaeon Methanococcus thermolithotrophicus. J. Biol. Chem. 268 (1993) 24047-24052
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 24047-24052
-
-
Hausner, W.1
Thomm, M.2
-
20
-
-
28844477575
-
Archaeal RNA polymerase is sensitive to intrinsic termination directed by transcribed and remote sequences
-
Santangelo T.J., and Reeve J.N. Archaeal RNA polymerase is sensitive to intrinsic termination directed by transcribed and remote sequences. J. Mol. Biol. 355 (2006) 196-210
-
(2006)
J. Mol. Biol.
, vol.355
, pp. 196-210
-
-
Santangelo, T.J.1
Reeve, J.N.2
-
21
-
-
0028798017
-
Functional interaction of yeast and human TATA-binding proteins with an archaeal RNA polymerase and promoter
-
Wettach J., Gohl H.P., Tschochner H., and Thomm M. Functional interaction of yeast and human TATA-binding proteins with an archaeal RNA polymerase and promoter. Proc. Natl Acad. Sci. USA 92 (1995) 472-476
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 472-476
-
-
Wettach, J.1
Gohl, H.P.2
Tschochner, H.3
Thomm, M.4
-
22
-
-
0030974754
-
Factor requirements for transcription in the Archaeon Sulfolobus shibatae
-
Qureshi S.A., Bell S.D., and Jackson S.P. Factor requirements for transcription in the Archaeon Sulfolobus shibatae. EMBO J. 16 (1997) 2927-2936
-
(1997)
EMBO J.
, vol.16
, pp. 2927-2936
-
-
Qureshi, S.A.1
Bell, S.D.2
Jackson, S.P.3
-
23
-
-
8444239349
-
Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1
-
Atomi H., Fukui T., Kanai T., Morikawa M., and Imanaka T. Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1. Archaea 1 (2004) 263-267
-
(2004)
Archaea
, vol.1
, pp. 263-267
-
-
Atomi, H.1
Fukui, T.2
Kanai, T.3
Morikawa, M.4
Imanaka, T.5
-
24
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
Haft D.H., Selengut J., Mongodin E.F., and Nelson K.E. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput. Biol. 1 (2005) e60
-
(2005)
PLoS Comput. Biol.
, vol.1
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
25
-
-
29344450201
-
Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA
-
Yamamoto T., Matsuda T., Inoue T., Matsumura H., Morikawa M., Kanaya S., and Kai Y. Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA. Protein Sci. 15 (2006) 152-161
-
(2006)
Protein Sci.
, vol.15
, pp. 152-161
-
-
Yamamoto, T.1
Matsuda, T.2
Inoue, T.3
Matsumura, H.4
Morikawa, M.5
Kanaya, S.6
Kai, Y.7
-
26
-
-
0032785656
-
Isolation of TBP-interacting protein (TIP) from a hyperthermophilic archaeon that inhibits the binding of TBP to TATA-DNA
-
Matsuda T., Morikawa M., Haruki M., Higashibata H., Imanaka T., and Kanaya S. Isolation of TBP-interacting protein (TIP) from a hyperthermophilic archaeon that inhibits the binding of TBP to TATA-DNA. FEBS Letters 457 (1999) 38-42
-
(1999)
FEBS Letters
, vol.457
, pp. 38-42
-
-
Matsuda, T.1
Morikawa, M.2
Haruki, M.3
Higashibata, H.4
Imanaka, T.5
Kanaya, S.6
-
27
-
-
0035380375
-
Interaction of TIP26 from a hyperthermophilic archaeon with TFB/TBP/DNA ternary complex
-
Matsuda T., Fujikawa M., Haruki M., Tang X.F., Ezaki S., Imanaka T., et al. Interaction of TIP26 from a hyperthermophilic archaeon with TFB/TBP/DNA ternary complex. Extremophiles 5 (2001) 177-182
-
(2001)
Extremophiles
, vol.5
, pp. 177-182
-
-
Matsuda, T.1
Fujikawa, M.2
Haruki, M.3
Tang, X.F.4
Ezaki, S.5
Imanaka, T.6
-
28
-
-
0032577337
-
The effects of salt on the TATA binding protein-DNA interaction from a hyperthermophilic archaeon
-
O'Brien R., DeDecker B., Fleming K.G., Sigler P.B., and Ladbury J.E. The effects of salt on the TATA binding protein-DNA interaction from a hyperthermophilic archaeon. J. Mol. Biol. 279 (1998) 117-125
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 117-125
-
-
O'Brien, R.1
DeDecker, B.2
Fleming, K.G.3
Sigler, P.B.4
Ladbury, J.E.5
-
29
-
-
26944492656
-
A core promoter element downstream of the TATA box that is recognized by TFIIB
-
Deng W., and Roberts S.G. A core promoter element downstream of the TATA box that is recognized by TFIIB. Genes Dev. 19 (2005) 2418-2423
-
(2005)
Genes Dev.
, vol.19
, pp. 2418-2423
-
-
Deng, W.1
Roberts, S.G.2
-
30
-
-
0031562901
-
The 2.1-Å crystal structure of an archaeal pre-initiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box
-
Kosa P.F., Ghosh G., DeDecker B.S., and Sigler P.B. The 2.1-Å crystal structure of an archaeal pre-initiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box. Proc. Natl Acad. Sci. USA 94 (1997) 6042-6047
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6042-6047
-
-
Kosa, P.F.1
Ghosh, G.2
DeDecker, B.S.3
Sigler, P.B.4
-
31
-
-
1142274214
-
Structural basis of transcription: an RNA polymerase II-TFIIB co-crystal at 4.5 Angstroms
-
Bushnell D.A., Westover K.D., Davis R.E., and Kornberg R.D. Structural basis of transcription: an RNA polymerase II-TFIIB co-crystal at 4.5 Angstroms. Science 303 (2004) 983-988
-
(2004)
Science
, vol.303
, pp. 983-988
-
-
Bushnell, D.A.1
Westover, K.D.2
Davis, R.E.3
Kornberg, R.D.4
-
32
-
-
0037123602
-
Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex
-
Murakami K.S., Masuda S., Campbell E.A., Muzzin O., and Darst S.A. Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science 296 (2002) 1285-1290
-
(2002)
Science
, vol.296
, pp. 1285-1290
-
-
Murakami, K.S.1
Masuda, S.2
Campbell, E.A.3
Muzzin, O.4
Darst, S.A.5
-
33
-
-
0037123659
-
Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 Å resolution
-
Murakami K.S., Masuda S., and Darst S.A. Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 Å resolution. Science 296 (2002) 1280-1284
-
(2002)
Science
, vol.296
, pp. 1280-1284
-
-
Murakami, K.S.1
Masuda, S.2
Darst, S.A.3
-
34
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution
-
Vassylyev D.G., Sekine S., Laptenko O., Lee J., Vassylyeva M.N., Borukhov S., and Yokoyama S. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution. Nature 417 (2002) 712-719
-
(2002)
Nature
, vol.417
, pp. 712-719
-
-
Vassylyev, D.G.1
Sekine, S.2
Laptenko, O.3
Lee, J.4
Vassylyeva, M.N.5
Borukhov, S.6
Yokoyama, S.7
-
35
-
-
33745832269
-
Region 3.2 of the sigma subunit contributes to the binding of the 3′-initiating nucleotide in the RNA polymerase active center and facilitates promoter clearance during initiation
-
Kulbachinskiy A., and Mustaev A. Region 3.2 of the sigma subunit contributes to the binding of the 3′-initiating nucleotide in the RNA polymerase active center and facilitates promoter clearance during initiation. J. Biol. Chem. 281 (2006) 18273-18276
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 18273-18276
-
-
Kulbachinskiy, A.1
Mustaev, A.2
-
36
-
-
33748947672
-
Crystal structure of an H/ACA box ribonucleoprotein particle
-
Li L., and Ye K. Crystal structure of an H/ACA box ribonucleoprotein particle. Nature 443 (2006) 302-307
-
(2006)
Nature
, vol.443
, pp. 302-307
-
-
Li, L.1
Ye, K.2
-
37
-
-
13544250517
-
Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes
-
Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., and Imanaka T. Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res. 15 (2005) 352-363
-
(2005)
Genome Res.
, vol.15
, pp. 352-363
-
-
Fukui, T.1
Atomi, H.2
Kanai, T.3
Matsumi, R.4
Fujiwara, S.5
Imanaka, T.6
-
38
-
-
33745015058
-
Identification of a glycolytic regulon in the archaea Pyrococcus and Thermococcus
-
van de Werken H.J., Verhees C.H., Akerboom J., de Vos W.M., and van der Oost J. Identification of a glycolytic regulon in the archaea Pyrococcus and Thermococcus. FEMS Microbiol. Letters 260 (2006) 69-76
-
(2006)
FEMS Microbiol. Letters
, vol.260
, pp. 69-76
-
-
van de Werken, H.J.1
Verhees, C.H.2
Akerboom, J.3
de Vos, W.M.4
van der Oost, J.5
-
39
-
-
0037215528
-
Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1
-
Sato T., Fukui T., Atomi H., and Imanaka T. Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J. Bacteriol. 185 (2003) 210-220
-
(2003)
J. Bacteriol.
, vol.185
, pp. 210-220
-
-
Sato, T.1
Fukui, T.2
Atomi, H.3
Imanaka, T.4
-
40
-
-
25144513854
-
Cyclic AMP receptor protein and RhaR synergistically activate transcription from the L-rhamnose-responsive rhaSR promoter in Escherichia coli
-
Wickstrum J.R., Santangelo T.J., and Egan S.M. Cyclic AMP receptor protein and RhaR synergistically activate transcription from the L-rhamnose-responsive rhaSR promoter in Escherichia coli. J. Bacteriol. 187 (2005) 6708-6718
-
(2005)
J. Bacteriol.
, vol.187
, pp. 6708-6718
-
-
Wickstrum, J.R.1
Santangelo, T.J.2
Egan, S.M.3
|