메뉴 건너뛰기




Volumn 31, Issue 2, 1999, Pages 641-650

The DNA binding protein Tfx from Methanobacterium thermoautotrophicum: Structure, DNA binding properties and transcriptional regulation

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; MOLYBDENUM; OXIDOREDUCTASE;

EID: 0032956998     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1999.01204.x     Document Type: Article
Times cited : (33)

References (48)
  • 2
    • 0029043298 scopus 로고
    • Transcription: New insights from studies on Archaea
    • Baumann, P., Qureshi, S.A., and Jackson, S.P. (1995) Transcription: new insights from studies on Archaea. Trends Genet 11: 279-283.
    • (1995) Trends Genet , vol.11 , pp. 279-283
    • Baumann, P.1    Qureshi, S.A.2    Jackson, S.P.3
  • 3
    • 0024850365 scopus 로고
    • Primer extension analysis of RNA
    • Dahlberg, J.E., and Abelson, J.N. (eds). San Diego and London: Academic Press
    • Boorstein, W.R., and Craig, E.A. (1989) Primer extension analysis of RNA. In Methods in Enzymology, Vol. 180. Dahlberg, J.E., and Abelson, J.N. (eds). San Diego and London: Academic Press, pp. 347-369.
    • (1989) Methods in Enzymology , vol.180 , pp. 347-369
    • Boorstein, W.R.1    Craig, E.A.2
  • 4
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic Archaeon Methanococcus jannaschii
    • Bult, C.J., White, O., Olsen, G.J., Zhou, L, Fleischmann, R.D., Sutton, G.G., et al. (1996) Complete genome sequence of the methanogenic Archaeon Methanococcus jannaschii. Science 273: 1058-1073.
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1    White, O.2    Olsen, G.J.3    Zhou, L.4    Fleischmann, R.D.5    Sutton, G.G.6
  • 5
    • 0030844095 scopus 로고    scopus 로고
    • Cloning and identification of the Sulfolobus solfataricus Irp gene encoding an archaeal homologue of the eubacterial leucine-responsive global transcriptional regulator Lrp
    • Charlier, D., Roovers, M., Thia-Toong, T.-L., Durbecq, V., and Glansdorff, N. (1997) Cloning and identification of the Sulfolobus solfataricus Irp gene encoding an archaeal homologue of the eubacterial leucine-responsive global transcriptional regulator Lrp. Gene 201: 63-68.
    • (1997) Gene , vol.201 , pp. 63-68
    • Charlier, D.1    Roovers, M.2    Thia-Toong, T.-L.3    Durbecq, V.4    Glansdorff, N.5
  • 6
    • 0031948599 scopus 로고    scopus 로고
    • 2- and ammonium-grown cells of the archaeon Methanosarcina barkeri 227
    • 2- and ammonium-grown cells of the archaeon Methanosarcina barkeri 227. J Bacteriol 180: 2723-2728.
    • (1998) J Bacteriol , vol.180 , pp. 2723-2728
    • Chien, Y.1    Helmann, J.D.2    Zinder, S.H.3
  • 7
    • 0031019644 scopus 로고    scopus 로고
    • Transcriptional regulation in Archaea: In vivo demonstration of a repressor binding site in a methanogen
    • Cohen-Kupiec, R., Blank, C., and Leigh, J.A. (1997) Transcriptional regulation in Archaea: in vivo demonstration of a repressor binding site in a methanogen. Proc Natl Acad Sci USA 94: 1316-1320.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 1316-1320
    • Cohen-Kupiec, R.1    Blank, C.2    Leigh, J.A.3
  • 8
    • 0027169695 scopus 로고
    • Complete nucleotide sequence of an archaeal (Pyrococcus woesei) gene encoding a homolog of eukaryotic transcription factor IIB (TFIIB)
    • Creti, R., Londel, P., and Cammarano, P. (1993) Complete nucleotide sequence of an archaeal (Pyrococcus woesei) gene encoding a homolog of eukaryotic transcription factor IIB (TFIIB). Nucleic Acids Res 21: 2942.
    • (1993) Nucleic Acids Res , vol.21 , pp. 2942
    • Creti, R.1    Londel, P.2    Cammarano, P.3
  • 9
    • 0029879480 scopus 로고    scopus 로고
    • Characterization of the distal promoter element of halobacteria in vivo using saturation mutagenesis and selection
    • Danner, S., and Soppa, J. (1996) Characterization of the distal promoter element of halobacteria in vivo using saturation mutagenesis and selection. Mol Microbiol 19: 1265-1276.
    • (1996) Mol Microbiol , vol.19 , pp. 1265-1276
    • Danner, S.1    Soppa, J.2
  • 10
    • 0024999332 scopus 로고
    • Improved detection of helix-turn-helix DNA-binding motifs in protein sequences
    • Dodd, J.B., and Egan, J.B. (1990) Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res 18: 5019-5026.
    • (1990) Nucleic Acids Res , vol.18 , pp. 5019-5026
    • Dodd, J.B.1    Egan, J.B.2
  • 11
    • 0029796977 scopus 로고    scopus 로고
    • Analysis of two-component signal transduction systems involved in transcriptional regulation
    • Hakenbeck, R., and Stock, J.B. (1996) Analysis of two-component signal transduction systems involved in transcriptional regulation. Methods Enzymol 273: 281-300.
    • (1996) Methods Enzymol , vol.273 , pp. 281-300
    • Hakenbeck, R.1    Stock, J.B.2
  • 12
    • 0020959710 scopus 로고
    • Studies on transformation of Escherichia coli with plasmids
    • Hanahan, D. (1983) Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166: 557-580.
    • (1983) J Mol Biol , vol.166 , pp. 557-580
    • Hanahan, D.1
  • 13
    • 0029860589 scopus 로고    scopus 로고
    • Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase
    • Hausner, W., Wettach, J., Hethke, C., and Thomm, M. (1996) Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase. J Biol Chem 271: 30144-30148.
    • (1996) J Biol Chem , vol.271 , pp. 30144-30148
    • Hausner, W.1    Wettach, J.2    Hethke, C.3    Thomm, M.4
  • 14
    • 0029583885 scopus 로고
    • The tungsten formylmethanofuran dehydrogenase from Methanobacterium thermoautotrophicum contains sequence motifs characteristic for enzymes containing molybdopterin dinucleotide
    • Hochheimer, A., Schmitz, R.A., Thauer, R.K., and Hedderich, R. (1995) The tungsten formylmethanofuran dehydrogenase from Methanobacterium thermoautotrophicum contains sequence motifs characteristic for enzymes containing molybdopterin dinucleotide. Eur J Biochem 234: 910-920.
    • (1995) Eur J Biochem , vol.234 , pp. 910-920
    • Hochheimer, A.1    Schmitz, R.A.2    Thauer, R.K.3    Hedderich, R.4
  • 15
    • 0029989411 scopus 로고    scopus 로고
    • The molybdenum formylmethanofuran dehydrogenase operon and the tungsten formylmethanofuran dehydrogenase operon from Methanobacterium thermoautotrophicum: Structures and transcriptional regulation
    • Hochheimer, A., Linder, D., Thauer, R.K., and Hedderich, R. (1996) The molybdenum formylmethanofuran dehydrogenase operon and the tungsten formylmethanofuran dehydrogenase operon from Methanobacterium thermoautotrophicum: structures and transcriptional regulation. Eur J Biochem 242: 156-162.
    • (1996) Eur J Biochem , vol.242 , pp. 156-162
    • Hochheimer, A.1    Linder, D.2    Thauer, R.K.3    Hedderich, R.4
  • 16
    • 0031664705 scopus 로고    scopus 로고
    • The formylmethanofuran dehydrogenase isoenzymes in Methanobacterium wolfei and M. thermoautotrophicum. Induction of the molybdenum isoenzyme by molybdate and constitutive synthesis of the tungsten isoenzyme
    • Hochheimer, A., Hedderich, R., and Thauer, R.K. (1998) The formylmethanofuran dehydrogenase isoenzymes in Methanobacterium wolfei and M. thermoautotrophicum. Induction of the molybdenum isoenzyme by molybdate and constitutive synthesis of the tungsten isoenzyme. Arch Microbiol 170: 389-394.
    • (1998) Arch Microbiol , vol.170 , pp. 389-394
    • Hochheimer, A.1    Hedderich, R.2    Thauer, R.K.3
  • 17
    • 0023131532 scopus 로고
    • Purification and use of Methanobacterium wolfei pseudomurein endopeptidase for lysis of Methanobacterium thermoautotrophicum
    • Kiener, A., König, H., Winter, J., and Leisinger, T. (1987) Purification and use of Methanobacterium wolfei pseudomurein endopeptidase for lysis of Methanobacterium thermoautotrophicum. J Bacteriol 169: 1010-1016.
    • (1987) J Bacteriol , vol.169 , pp. 1010-1016
    • Kiener, A.1    König, H.2    Winter, J.3    Leisinger, T.4
  • 18
    • 0031562901 scopus 로고    scopus 로고
    • The 2.1-Å crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II) B core/TATA-box
    • Kosa, P.F., Ghosh, G., DeDecker, B.S., and Sigler, P.B. (1997) The 2.1-Å crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II) B core/TATA-box. Proc Natl Acad Sci USA 94: 6042-6047.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 6042-6047
    • Kosa, P.F.1    Ghosh, G.2    DeDecker, B.S.3    Sigler, P.B.4
  • 19
    • 0032546745 scopus 로고    scopus 로고
    • The transcriptional activator GvpE for the halobacterial gas vesicle genes resembles a basic region leucine-zipper regulatory protein
    • Krueger, K., Hermann, T., Armbruster, V., and Pfeifer, F. (1998) The transcriptional activator GvpE for the halobacterial gas vesicle genes resembles a basic region leucine-zipper regulatory protein. J Mol Biol 279: 761-771.
    • (1998) J Mol Biol , vol.279 , pp. 761-771
    • Krueger, K.1    Hermann, T.2    Armbruster, V.3    Pfeifer, F.4
  • 20
    • 0028983409 scopus 로고
    • Transcription in archaea: Similarity to that in eucarya
    • Langer, D., Hain, J., Thuriaux, P., and Zillig, W. (1995) Transcription in archaea: similarity to that in eucarya. Proc Natl Acad Sci USA 92: 5768-5772.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 5768-5772
    • Langer, D.1    Hain, J.2    Thuriaux, P.3    Zillig, W.4
  • 21
    • 0028176170 scopus 로고
    • Transcription factor HD in the Archaea: Sequence in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes
    • Marsh, T.L., Reich, C.I., Whitelock, R.B., and Olsen, G.J. (1994) Transcription factor HD in the Archaea: sequence in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes. Proc Natl Acad Sci USA 91: 4180-4184.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 4180-4184
    • Marsh, T.L.1    Reich, C.I.2    Whitelock, R.B.3    Olsen, G.J.4
  • 22
    • 0028921122 scopus 로고
    • Structure and function of DNA-binding proteins
    • Nelson, H.C.M. (1995) Structure and function of DNA-binding proteins. Curr Opin Genet Dev 5: 180-189.
    • (1995) Curr Opin Genet Dev , vol.5 , pp. 180-189
    • Nelson, H.C.M.1
  • 23
    • 0030248496 scopus 로고    scopus 로고
    • Core promoters and transcriptional control
    • Novina, C.D., and Roy, A.L. (1996) Core promoters and transcriptional control. Trends Genet 12: 351-355.
    • (1996) Trends Genet , vol.12 , pp. 351-355
    • Novina, C.D.1    Roy, A.L.2
  • 24
    • 0026754364 scopus 로고
    • TFIIB, and evolutionary link between the transcription machineries of archaebacteria and eukaryotes
    • Ouzounis, C., and Sander, C. (1992) TFIIB, and evolutionary link between the transcription machineries of archaebacteria and eukaryotes. Cell 71: 189-190.
    • (1992) Cell , vol.71 , pp. 189-190
    • Ouzounis, C.1    Sander, C.2
  • 25
    • 0028908091 scopus 로고
    • In vivo definition of an archaeal promoter
    • Palmer, J.P., and Daniels, J.D. (1995) In vivo definition of an archaeal promoter. J Bacteriol 177: 1844-1849.
    • (1995) J Bacteriol , vol.177 , pp. 1844-1849
    • Palmer, J.P.1    Daniels, J.D.2
  • 26
    • 0030960672 scopus 로고    scopus 로고
    • Transcriptional activation by recruitment
    • Ptashne, M., and Gann, A. (1997) Transcriptional activation by recruitment. Nature 386: 569-577.
    • (1997) Nature , vol.386 , pp. 569-577
    • Ptashne, M.1    Gann, A.2
  • 27
    • 0029006739 scopus 로고
    • Cloning and functional analysis of the TATA binding protein from Sulfolobus shibatae
    • Qureshi, S.A., Baumann, P., Rowlands, T., Khoo, B., and Jackson, S.P. (1995a) Cloning and functional analysis of the TATA binding protein from Sulfolobus shibatae. Nucleic Acids Res 23: 1775-1781.
    • (1995) Nucleic Acids Res , vol.23 , pp. 1775-1781
    • Qureshi, S.A.1    Baumann, P.2    Rowlands, T.3    Khoo, B.4    Jackson, S.P.5
  • 28
    • 0029042364 scopus 로고
    • Molecular cloning of the transcription factor TFIIB homolog from Sulfolobus shibatae
    • Qureshi, S.A., Khoo, B., Baumann, P., and Jackson, S.P. (1995b) Molecular cloning of the transcription factor TFIIB homolog from Sulfolobus shibatae. Proc Natl Acad Sci USA 92: 6077-6081.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 6077-6081
    • Qureshi, S.A.1    Khoo, B.2    Baumann, P.3    Jackson, S.P.4
  • 29
    • 0030974754 scopus 로고    scopus 로고
    • Factor requirements for transcription in the Archaeon Sulfolobus shibatae
    • Qureshi, S.A., Bell, S.D., and Jackson, S.P. (1997) Factor requirements for transcription in the Archaeon Sulfolobus shibatae. EMBO J 16: 2927-2936.
    • (1997) EMBO J , vol.16 , pp. 2927-2936
    • Qureshi, S.A.1    Bell, S.D.2    Jackson, S.P.3
  • 30
    • 0031990302 scopus 로고    scopus 로고
    • Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strength
    • Qureshi, S.A., and Jackson, S.P. (1998) Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strength. Mol Cell 1: 389-400.
    • (1998) Mol Cell , vol.1 , pp. 389-400
    • Qureshi, S.A.1    Jackson, S.P.2
  • 31
    • 0026732105 scopus 로고
    • Molecular biology of methanogens
    • Reeve, J.N. (1992) Molecular biology of methanogens. Annu Rev Microbiol 46: 165-191.
    • (1992) Annu Rev Microbiol , vol.46 , pp. 165-191
    • Reeve, J.N.1
  • 32
    • 0031587824 scopus 로고    scopus 로고
    • Archaeal histones, nucleosomes, and transcription initiation
    • Reeve, J.N., Sandman, K., and Daniels, C.J. (1997) Archaeal histones, nucleosomes, and transcription initiation. Cell 89: 999-1002.
    • (1997) Cell , vol.89 , pp. 999-1002
    • Reeve, J.N.1    Sandman, K.2    Daniels, C.J.3
  • 33
    • 0025630439 scopus 로고
    • Mutational analysis of an archaebacterial promoter: Essential role of a TATA box for transcription efficiency and start-site selection in vitro
    • Reiter, W.-D., Hüdepohl, U., and Zillig, W. (1990) Mutational analysis of an archaebacterial promoter: essential role of a TATA box for transcription efficiency and start-site selection in vitro. Proc Natl Acad Sci USA 87: 9509-9513.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 9509-9513
    • Reiter, W.-D.1    Hüdepohl, U.2    Zillig, W.3
  • 34
    • 0028361219 scopus 로고
    • The TATA-binding protein: A general transcription factor in eukaryotes and archaebacteria
    • Rowlands, T., Baumann, P., and Jackson, S.P. (1994) The TATA-binding protein: a general transcription factor in eukaryotes and archaebacteria. Science 264: 1326-1329.
    • (1994) Science , vol.264 , pp. 1326-1329
    • Rowlands, T.1    Baumann, P.2    Jackson, S.P.3
  • 36
    • 0017681196 scopus 로고
    • DNA sequencing with chain terminating inhibitors
    • Sanger, F., Nicklen, S., and Coulson, A.R. (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467.
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 5463-5467
    • Sanger, F.1    Nicklen, S.2    Coulson, A.R.3
  • 38
    • 15644383855 scopus 로고    scopus 로고
    • Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: Functional analysis and comparative genomics
    • Smith, D.R., Doucette-Stamm, L.A., Deloughery, C., Lee, H., Dubois, J., Aldredge, T., et al. (1997) Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: functional analysis and comparative genomics. J Bacteriol 179: 7135-7155.
    • (1997) J Bacteriol , vol.179 , pp. 7135-7155
    • Smith, D.R.1    Doucette-Stamm, L.A.2    Deloughery, C.3    Lee, H.4    Dubois, J.5    Aldredge, T.6
  • 39
    • 0030825661 scopus 로고    scopus 로고
    • The TATA-box-binding protein (TBP) of Halobacterium salinarum. Cloning of the tbp gene, heterologous production of TBP and folding of TBP into a native conformation
    • Soppa, J., and Link, T.A. (1997) The TATA-box-binding protein (TBP) of Halobacterium salinarum. Cloning of the tbp gene, heterologous production of TBP and folding of TBP into a native conformation. Eur J Biochem 249: 318-324.
    • (1997) Eur J Biochem , vol.249 , pp. 318-324
    • Soppa, J.1    Link, T.A.2
  • 40
    • 0027481122 scopus 로고
    • Antisense RNA mediates transcriptional processing in an archaebacterium, indicating a novel kind of RNase activity
    • Stolt, P., and Zillig, W. (1993) Antisense RNA mediates transcriptional processing in an archaebacterium, indicating a novel kind of RNase activity. Mol Microbiol 7: 875-882.
    • (1993) Mol Microbiol , vol.7 , pp. 875-882
    • Stolt, P.1    Zillig, W.2
  • 41
    • 0028175497 scopus 로고
    • Transcription of the halophage phi H repressor gene is abolished by transcription from an inversely oriented lytic promoter
    • Stolt, P., and Zillig, W. (1994) Transcription of the halophage phi H repressor gene is abolished by transcription from an inversely oriented lytic promoter. FEBS Lett 344: 125-128.
    • (1994) FEBS Lett , vol.344 , pp. 125-128
    • Stolt, P.1    Zillig, W.2
  • 42
    • 0000739582 scopus 로고    scopus 로고
    • Reactions with molecular hydrogen in microorganisms. Evidence for a purely organic hydrogenation catalyst
    • Thauer, R.K., Klein, A.R., and Hartmann, G.C. (1996) Reactions with molecular hydrogen in microorganisms. Evidence for a purely organic hydrogenation catalyst. Chem Rev 96: 3031-3042.
    • (1996) Chem Rev , vol.96 , pp. 3031-3042
    • Thauer, R.K.1    Klein, A.R.2    Hartmann, G.C.3
  • 43
    • 0029887361 scopus 로고    scopus 로고
    • Archaeal transcription factors and their role in transcription initiation
    • Thomm, M. (1996) Archaeal transcription factors and their role in transcription initiation. FEMS Microbiol Rev 18: 159-171
    • (1996) FEMS Microbiol Rev , vol.18 , pp. 159-171
    • Thomm, M.1
  • 44
    • 0031973963 scopus 로고    scopus 로고
    • Heat shock inducibility of an archaeal TATA-like promoter is controlled by adjacent sequence elements
    • Thompson, D.K., and Daniels, C.J. (1998) Heat shock inducibility of an archaeal TATA-like promoter is controlled by adjacent sequence elements. Mol Microbiol 27: 541-551.
    • (1998) Mol Microbiol , vol.27 , pp. 541-551
    • Thompson, D.K.1    Daniels, C.J.2
  • 45
    • 0028970090 scopus 로고
    • Structure and function of transcriptional activation domains
    • Triezenberg, S.J. (1995) Structure and function of transcriptional activation domains. Curr Opin Genet Dev 5: 190-196.
    • (1995) Curr Opin Genet Dev , vol.5 , pp. 190-196
    • Triezenberg, S.J.1
  • 46
    • 0030249382 scopus 로고    scopus 로고
    • TAFs mediate transcriptional activation and promoter selectivity
    • Verrijzer, C.P., and Tjian, R. (1996) TAFs mediate transcriptional activation and promoter selectivity. Trends Biochem Sci 21: 338-342.
    • (1996) Trends Biochem Sci , vol.21 , pp. 338-342
    • Verrijzer, C.P.1    Tjian, R.2
  • 47
    • 0030043986 scopus 로고    scopus 로고
    • Genetic and topological analysis of the bop promoter of Halobacterium halobium: Stimulation by DNA supercoiling and non-B-DNA structure
    • Yang, C.-F., Kim, J.-M., Molinari, E., and DasSarma, S. (1996) Genetic and topological analysis of the bop promoter of Halobacterium halobium: stimulation by DNA supercoiling and non-B-DNA structure. J Bacteriol 178: 840-845.
    • (1996) J Bacteriol , vol.178 , pp. 840-845
    • Yang, C.-F.1    Kim, J.-M.2    Molinari, E.3    DasSarma, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.