-
1
-
-
34247158257
-
Mechanism of RNA silencing by Hfq-binding small RNAs
-
DOI 10.1016/j.mib.2007.03.010, PII S1369527407000276, Cell Regulation (RNA Special Issue)
-
Aiba H. Mechanism of RNA silencing by Hfq-binding small RNAs Current Opinion in Microbiology 2007 10 2 134-139 DOI 10.1016/j.mib.2007.03.010, PII S1369527407000276, Cell Regulation (RNA Special Issue) Aiba, H. (2007) Mechanism of RNA silencing by Hfq-binding small RNAs. Curr Opin Microbiol 10: 134-139. (Pubitemid 46590050)
-
(2007)
Current Opinion in Microbiology
, vol.10
, Issue.2
, pp. 134-139
-
-
Aiba, H.1
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0004270170
-
-
New York: John Wiley & Sons
-
Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., and Struhl, K. (1992) Current Protocol in Molecular Biology. New York: John Wiley & Sons.
-
(1992)
Current Protocol in Molecular Biology
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
4
-
-
0343528013
-
Generation of dominant selectable markers for resistance to pseudomonic acid by cloning and mutagenesis of the ileS gene from the archaeon Methanosarcina barkeri Fusaro
-
DOI 10.1128/JB.182.9.2611-2618.2000
-
Boccazzi P. Zhang J.K. Metcalf W.W. Generation of dominant selectable markers for resistance to pseudomonic acid by cloning and mutagenesis of the ileS gene from the archaeon Methanosarcina barkeri Fusaro Journal of Bacteriology 2000 182 9 2611-2618 DOI 10.1128/JB.182.9.2611-2618.2000 Boccazzi, P., Zhang, J.K., and Metcalf, W.W. (2000) Generation of dominant selectable markers for resistance to pseudomonic acid by cloning and mutagenesis of the ileS gene from the archaeon Methanosarcina barkeri fusaro. J Bacteriol 182: 2611-2618. (Pubitemid 30212923)
-
(2000)
Journal of Bacteriology
, vol.182
, Issue.9
, pp. 2611-2618
-
-
Boccazzi, P.1
Zhang, J.K.2
Metcalf, W.W.3
-
5
-
-
37749010878
-
Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2A
-
Bose, A., and Metcalf, W.W. (2008) Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2A. Mol Microbiol 67: 649661.
-
(2008)
Mol Microbiol
, vol.67
, pp. 649-661
-
-
Bose, A.1
Metcalf, W.W.2
-
6
-
-
44349098671
-
Genetic analysis of the methanol- And methylamine-specific methyltransferase 2 genes of Methanosarcina acetivorans C2A
-
DOI 10.1128/JB.00117-08
-
Bose A. Pritchett M.A. Metcalf W.W. Genetic analysis of the methanol- and methylamine-specific methyltransferase 2 genes of Methanosarcina acetivorans C2A Journal of Bacteriology 2008 190 11 4017-4026 DOI 10.1128/JB.00117-08 Bose, A., Pritchett, M.A., and Metcalf, W.W. (2008) Genetic analysis of the methanol- and methylamine-specific methyltransferase 2 genes of Methanosarcina acetivorans C2A. J Bacteriol 190: 4017-4026. (Pubitemid 351732881)
-
(2008)
Journal of Bacteriology
, vol.190
, Issue.11
, pp. 4017-4026
-
-
Bose, A.1
Pritchett, M.A.2
Metcalf, W.W.3
-
7
-
-
0031799184
-
Clustered genes encoding the methyltransferases of methanogenesis from monomethylamine
-
Burke, S.A., Lo, S.L., and Krzycki, J.A. (1998) Clustered genes encoding the methyltransferases of methanogenesis from monomethylamine. J Bacteriol 180: 3432-3440.
-
(1998)
J Bacteriol
, vol.180
, pp. 3432-3440
-
-
Burke, S.A.1
Lo, S.L.2
Krzycki, J.A.3
-
8
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
DOI 10.1093/nar/gkg500
-
Chenna R. Sugawara H. Koike T. Lopez R. Gibson T.J. Higgins D.G. Thompson J.D. Multiple sequence alignment with the Clustal series of programs Nucleic Acids Research 2003 31 13 3497-3500 DOI 10.1093/nar/gkg500 Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T.J., Higgins, D.G., and Thompson, J.D. (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31: 3497-3500. (Pubitemid 37442184)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
9
-
-
0017650042
-
Carbon monoxide oxidation by methanogenic bacteria
-
Daniels L. Fuchs G. Thauer R.K. Zeikus J.G. Carbon monoxide oxidation by methanogenic bacteria Journal of Bacteriology 1977 132 1 118-126 Daniels, L., Fuchs, G., Thauer, R.K., and Zeikus, J.G. (1977) Carbon monoxide oxidation by methanogenic Bacteria. J Bacteriol 132: 118-126. (Pubitemid 8194527)
-
(1977)
Journal of Bacteriology
, vol.132
, Issue.1
, pp. 118-126
-
-
Daniels, L.1
Fuchs, G.2
Thauer, R.K.3
Zeikus, J.G.4
-
10
-
-
0030596148
-
The crystal structure of a hyperthermophilic archaeal TATA-box binding protein
-
DOI 10.1006/jmbi.1996.0697
-
DeDecker B.S. O'Brien R. Fleming P.J. Geiger J.H. Jackson S.P. Sigler P.B. The crystal structure of a hyperthermophilic archaeal TATA-box binding protein Journal of Molecular Biology 1996 264 5 1072-1084 DOI 10.1006/jmbi.1996.0697 DeDecker, B.S., O'Brien, R., Fleming, P.J., Geiger, J.H., Jackson, S.P., and Sigler, P.B. (1996) The crystal structure of a hyperthermophilic archaeal TATA-box binding protein. J Mol Biol 264: 1072-1084. (Pubitemid 27019493)
-
(1996)
Journal of Molecular Biology
, vol.264
, Issue.5
, pp. 1072-1084
-
-
Dedecker, B.S.1
O'Brien, R.2
Fleming, P.J.3
Geiger, J.H.4
Jackson, S.P.5
Sigler, P.B.6
-
11
-
-
0035988323
-
The genome of Methanosarcina mazei: Evidence for lateral gene transfer between bacteria and archaea
-
Deppenmeier U. Johann A. Hartsch T. Merkl R. Schmitz R.A. Martinez-Arias R. Henne A. Wiezer A. Baumer S. Jacobi C. Bruggemann H. Lienard T. Christmann A. Bomeke M. Steckel S. Bhattacharyya A. Lykidis A. Overbeek R. Klenk H.-P. Gunsalus R.P. Fritz H.-J. Gottschalk G. The genome of Methanosarcina mazei: Evidence for lateral gene transfer between bacteria and archaea Journal of Molecular Microbiology and Biotechnology 2002 4 4 453-461 Deppenmeier, U., Johann, A., Hartsch, T., Merkl, R., Schmitz, R.A., Martinez-Arias, R., et al. (2002) The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea. J Mol Microbiol Biotechnol 4: 453-461. (Pubitemid 34784706)
-
(2002)
Journal of Molecular Microbiology and Biotechnology
, vol.4
, Issue.4
, pp. 453-461
-
-
Deppenmeier, U.1
Johann, A.2
Hartsch, T.3
Merkl, R.4
Schmitz, R.A.5
Martinez-Arias, R.6
Henne, A.7
Wiezer, A.8
Baumer, S.9
Jacobi, C.10
Bruggemann, H.11
Lienard, T.12
Christmann, A.13
Bomeke, M.14
Steckel, S.15
Bhattacharyya, A.16
Lykidis, A.17
Overbeek, R.18
Klenk, H.-P.19
Gunsalus, R.P.20
Fritz, H.-J.21
Gottschalk, G.22
more..
-
12
-
-
0024999332
-
Improved detection of helix-turn-helix DNA-binding motifs in protein sequences
-
Dodd I.B. Egan J.B. Improved detection of helix-turn-helix DNA-binding motifs in protein sequences Nucleic Acids Research 1990 18 17 5019-5026 Dodd, I.B., and Egan, J.B. (1990) Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res 18: 5019-5026. (Pubitemid 20270043)
-
(1990)
Nucleic Acids Research
, vol.18
, Issue.17
, pp. 5019-5026
-
-
Dodd, I.B.1
Egan, J.B.2
-
13
-
-
0036225678
-
The genome of M. acetivorans reveals extensive metabolic and physiological diversity
-
DOI 10.1101/gr.223902
-
Galagan J.E. Nusbaum C. Roy A. Endrizzi M.G. Macdonald P. Fitzhugh W. Calvo S. Engels R. Smirnov S. Atnoor D. Brown A. Allen N. Naylor J. Stange-Thomann N. Dearellano K. Johnson R. Linton L. McEwan P. McKernan K. Talamas J. Tirrell A. Ye W. Zimmer A. Barber R.D. Cann I. Graham D.E. Grahame D.A. Guss A.M. Hedderich R. Ingram-Smith C. Craig Kuettner H. Krzycki J.A. Leigh J.A. Li W. Liu J. Mukhopadhyay B. Reeve J.N. Smith K. Springer T.A. Umayam L.A. White O. White R.H. De Macario E.C. Ferry J.G. Jarrell K.F. Jing H. Macario A.J.L. Paulsen I. Pritchett M. Sowers K.R. Swanson R.V. Zinder S.H. Lander E. Metcalf W.W. Birren B. The genome of M. acetivorans reveals extensive metabolic and physiological diversity Genome Research 2002 12 4 532-542 DOI 10.1101/gr.223902 Galagan, J.E., Nusbaum, C., Roy, A., Endrizzi, M.G., Macdonald, P., FitzHugh, W., et al. (2002) The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res 12: 532-542. (Pubitemid 34308633)
-
(2002)
Genome Research
, vol.12
, Issue.4
, pp. 532-542
-
-
Galagan, J.E.1
Nusbaum, C.2
Roy, A.3
Endrizzi, M.G.4
Macdonald, P.5
Fitzhugh, W.6
Calvo, S.7
Engels, R.8
Smirnov, S.9
Atnoor, D.10
Brown, A.11
Allen, N.12
Naylor, J.13
Stange-Thomann, N.14
Dearellano, K.15
Johnson, R.16
Linton, L.17
McEwan, P.18
McKernan, K.19
Talamas, J.20
Tirrell, A.21
Ye, W.22
Zimmer, A.23
Barber, R.D.24
Cann, I.25
Graham, D.E.26
Grahame, D.A.27
Guss, A.M.28
Hedderich, R.29
Ingram-Smith, C.30
Craig Kuettner, H.31
Krzycki, J.A.32
Leigh, J.A.33
Li, W.34
Liu, J.35
Mukhopadhyay, B.36
Reeve, J.N.37
Smith, K.38
Springer, T.A.39
Umayam, L.A.40
White, O.41
White, R.H.42
De Macario, E.C.43
Ferry, J.G.44
Jarrell, K.F.45
Jing, H.46
Macario, A.J.L.47
Paulsen, I.48
Pritchett, M.49
Sowers, K.R.50
Swanson, R.V.51
Zinder, S.H.52
Lander, E.53
Metcalf, W.W.54
Birren, B.55
more..
-
14
-
-
0036796467
-
CDART: Protein homology by domain architecture
-
DOI 10.1101/gr.278202
-
Geer L.Y. Domrachev M. Lipman D.J. Bryant S.H. CDART: Protein homology by domain architecture Genome Research 2002 12 10 1619-1623 DOI 10.1101/gr.278202 Geer, L.Y., Domrachev, M., Lipman, D.J., and Bryant, S.H. (2002) CDART: protein homology by domain architecture. Genome Res 12: 1619-1623. (Pubitemid 35175101)
-
(2002)
Genome Research
, vol.12
, Issue.10
, pp. 1619-1623
-
-
Geer, L.Y.1
Domrachev, M.2
Lipman, D.J.3
Bryant, S.H.4
-
15
-
-
0035980239
-
Zincthiolate intermediate in catalysis of methyl group transfer in Methanosarcina barkeri
-
Gencic, S., LeClerc, G.M., Goriatova, N., Peariso, K., Penner-Hahn, J.E., and Grahame, D.A. (2001) Zincthiolate intermediate in catalysis of methyl group transfer in Methanosarcina barkeri. Biochemistry 40: 13068-13078.
-
(2001)
Biochemistry
, vol.40
, pp. 13068-13078
-
-
Gencic, S.1
Leclerc, G.M.2
Goriatova, N.3
Peariso, K.4
Penner-Hahn, J.E.5
Grahame, D.A.6
-
16
-
-
57449120302
-
New methods for tightly regulated gene expression and highly efficient insertion of foreign genes for Methanosarcina species
-
Guss, A.M., Rother, M., Zhang, J.K., Kulkami, G., and Metcalf, W.W. (2008) New methods for tightly regulated gene expression and highly efficient insertion of foreign genes for Methanosarcina species. Archaea 2: 193-203.
-
(2008)
Archaea
, vol.2
, pp. 193-203
-
-
Guss, A.M.1
Rother, M.2
Zhang, J.K.3
Kulkami, G.4
Metcalf, W.W.5
-
17
-
-
0022640621
-
Methyl chloride: Naturally occurring toxicant and C-1 growth substrate
-
Hartmans S. Schmuckle A. Cook A.M. Leisinger T. Methyl chloride: Naturally occurring toxicant and C-1 growth substrate Journal of General Microbiology 1986 132 4 1139-1142 Hartmans, S., Schmukle, A., Cook, A.M., and Leisinger, T. (1986) Methyl chloride: naturally occurring toxicant and C-1 growth substrate. J General Microbiol 132: 1139-1142. (Pubitemid 16115620)
-
(1986)
Journal of General Microbiology
, vol.132
, Issue.4
, pp. 1139-1142
-
-
Hartmans, S.1
Schmuckle, A.2
Cook, A.M.3
Leisinger, T.4
-
18
-
-
0024556150
-
Engineering hybrid genes without the use of restriction enzymes: Gene splicing by overlap extension
-
Horton, R.M., Hunt, H.D., Ho, S.N., Pullen, J.K., and Pease, L.R. (1989) Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. Gene 77: 61-68.
-
(1989)
Gene
, vol.77
, pp. 61-68
-
-
Horton, R.M.1
Hunt, H.D.2
Ho, S.N.3
Pullen, J.K.4
Pease, L.R.5
-
19
-
-
33750457352
-
Bacterial taxa that limit sulfur flux from the ocean
-
Howard, E.C., Henriksen, J.R., Buchan, A., Reisch, C.R., Burgmann, H., Welsh, R., et al. (2006) Bacterial taxa that limit sulfur flux from the ocean. Science 314: 649-652.
-
(2006)
Science
, vol.314
, pp. 649-652
-
-
Howard, E.C.1
Henriksen, J.R.2
Buchan, A.3
Reisch, C.R.4
Burgmann, H.5
Welsh, R.6
-
20
-
-
33750043437
-
Translation initiation and the fate of bacterial mRNAs
-
Kaberdin, V.R., and Blasi, U. (2006) Translation initiation and the fate of bacterial mRNAs. FEMS Microbiol Rev 30: 967-979.
-
(2006)
FEMS Microbiol Rev
, vol.30
, pp. 967-979
-
-
Kaberdin, V.R.1
Blasi, U.2
-
21
-
-
0024123419
-
Dimethyl sulfide production and marine phytoplankton: The importance of species composition and cell size
-
Keller, M.D. (1988) Dimethyl sulfide production and marine phytoplankton: the importance of species composition and cell size. Biol Oceanogr 6: 375-382.
-
(1988)
Biol Oceanogr
, vol.6
, pp. 375-382
-
-
Keller, M.D.1
-
22
-
-
0036239341
-
The role of zinc in the methylation of the coenzyme M thiol group in methanol:coenzyme M methyltransferase from Methanosarcina barker
-
Kruer, M., Haumann, M., Meyer-Klaucke, W., Thauer, R.K., and Dau, H. (2002) The role of zinc in the methylation of the coenzyme M thiol group in methanol:coenzyme M methyltransferase from Methanosarcina barker. Eur J Biochem 269: 2117-2123.
-
(2002)
Eur J Biochem
, vol.269
, pp. 2117-2123
-
-
Kruer, M.1
Haumann, M.2
Meyer-Klaucke, W.3
Thauer, R.K.4
Dau, H.5
-
23
-
-
0020059140
-
Comparison of unitrophic and mixotrophic substrate metabolism by acetate-adapted strain of Methanosarcina barkeri
-
Krzycki, J.A., Wolkin, R.H., and Zeikus, J.G. (1982) Comparison of unitrophic and mixotrophic substrate metabolism by acetate-adapted strain of Methanosarcina barkeri. J Bacteriol 149: 247-254.
-
(1982)
J Bacteriol
, vol.149
, pp. 247-254
-
-
Krzycki, J.A.1
Wolkin, R.H.2
Zeikus, J.G.3
-
24
-
-
33845187184
-
2 to methane in CO-grown Methanosarcina acetivorans revealed by proteomics
-
DOI 10.1073/pnas.0608833103
-
2 to methane in CO-grown Methanosarcina acetivorans revealed by proteomics Proceedings of the National Academy of Sciences of the United States of America 2006 103 47 17921-17926 DOI 10.1073/pnas.0608833103 Lessner, D.J., Li, L., Li, Q., Rejtar, T., Andreev, V.P., Reichten, M., et al. (2006) An unconventional pathway for reduction of C02 to methane in CO-grown Methanosarcina acetivorans revealed by proteomics. Proc Natl Acad Sci USA 103: 17921-17926. (Pubitemid 44852261)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.47
, pp. 17921-17926
-
-
Lessner, D.J.1
Li, L.2
Li, Q.3
Rejtar, T.4
Andreev, V.P.5
Reichlen, M.6
Hill, K.7
Moran, J.J.8
Karger, B.L.9
Ferry, J.G.10
-
25
-
-
0032519353
-
GeneMark.hmm: New solutions for gene finding
-
Lukashin, A.V., and Borodovsky, M. (1998) GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res 26: 1107-1115.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
26
-
-
0028855425
-
Methanogenic conversion of 3-S-methylmercaptopropionate to 3-mercaptopropionate
-
van der Maarel, M., Jansen, M., and Hansen, T.A. (1995) Methanogenic conversion of 3-S-methylmercaptopropionate to 3-mercaptopropionate. Appl Environ Microbiol 61: 48-51.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 48-51
-
-
Van Der Maarel, M.1
Jansen, M.2
Hansen, T.A.3
-
27
-
-
0035169120
-
T and development of functional gene probes to detect halomethane-degrading bacteria
-
DOI 10.1128/AEM.67.1.307-316.2001
-
T and development of functional gene probes to detect halomethane-degrading bacteria Applied and Environmental Microbiology 2001 67 1 307-316 DOI 10.1128/AEM.67.1.307-316.2001 McAnulla, C., Woodall, C.A., McDonald, L.R., Studer, A., Vuilleumier, S., Leisinger, T., and Murrell, J.C. (2001) Chloromethane utilization gene cluster from Hyphomicrobium chloromethanicum strain CM2(T) and development of functional gene probes to detect halomethane-degrading Bacteria. Appl Environ Microbiol 67: 307-316. (Pubitemid 32045664)
-
(2001)
Applied and Environmental Microbiology
, vol.67
, Issue.1
, pp. 307-316
-
-
McAnulla, C.1
Woodall, C.A.2
McDonald, I.R.3
Studer, A.4
Vuilleumier, S.5
Leisinger, T.6
Murrell, J.C.7
-
28
-
-
33751081532
-
The Methanosarcina barkeri genome: Comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes
-
DOI 10.1128/JB.00810-06
-
Maeder D.L. Anderson I. Brettin T.S. Bruce D.C. Gilna P. Han C.S. Lapidus A. Metcalf W.W. Saunders E. Tapia R. Sowers K.R. The Methanosarcina barkeri genome: Comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes Journal of Bacteriology 2006 188 22 7922-7931 DOI 10.1128/JB.00810-06 Maeder, D.L., Anderson, L, Brettin, T.S., Bruce, D.C., Gilna, P., Han, C.S., et al. (2006) The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes. J Bacteriol 188: 7922-7931. (Pubitemid 44764528)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.22
, pp. 7922-7931
-
-
Maeder, D.L.1
Anderson, I.2
Brettin, T.S.3
Bruce, D.C.4
Gilna, P.5
Han, C.S.6
Lapidus, A.7
Metcalf, W.W.8
Saunders, E.9
Tapia, R.10
Sowers, K.R.11
-
29
-
-
33846033400
-
CDD: A conserved domain database for interactive domain family analysis
-
DOI 10.1093/nar/gkl951
-
Marchler-Bauer A. Anderson J.B. Derbyshire M.K. DeWeese-Scott C. Gonzales N.R. Gwadz M. Hao L. He S. Hurwitz D.I. Jackson J.D. Ke Z. Krylov D. Lanczycki C.J. Liebert C.A. Liu C. Lu F. Lu S. Marchler G.H. Mullokandov M. Song J.S. Thanki N. Yamashita R.A. Yin J.J. Zhang D. Bryant S.H. CDD: A conserved domain database for interactive domain family analysis Nucleic Acids Research 2007 35 SUPPL. 1 D237-D240 DOI 10.1093/nar/gkl951 Marchler-Bauer, A., Anderson, J.B., Derbyshire, M.K., DeWeese-Scott, C., Gonzales, N.R., Gwadz, M., et al. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res 35: D237D240. (Pubitemid 46056206)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Derbyshire, M.K.3
Deweese-Scott, C.4
Gonzales, N.R.5
Gwadz, M.6
Hao, L.7
He, S.8
Hurwitz, D.I.9
Jackson, J.D.10
Ke, Z.11
Krylov, D.12
Lanczycki, C.J.13
Liebert, C.A.14
Liu, C.15
Lu, F.16
Lu, S.17
Marchler, G.H.18
Mullokandov, M.19
Song, J.S.20
Thanki, N.21
Yamashita, R.A.22
Yin, J.J.23
Zhang, D.24
Bryant, S.H.25
more..
-
30
-
-
33644873697
-
The integrated microbial genomes (IMG) system
-
Markowitz, V.M., Korzeniewski, F., Palaniappan, K., Szeto, E., Werner, G., Padki, A., et al. (2006) The integrated microbial genomes (IMG) system. Nucleic Acids Res 34: D344-D348.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Markowitz, V.M.1
Korzeniewski, F.2
Palaniappan, K.3
Szeto, E.4
Werner, G.5
Padki, A.6
-
31
-
-
0029796392
-
Molecular, genetic, and biochemical characterization of the serC gene of Methanosarcina barkeri Fusaro
-
Metcalf W.W. Zhang J.-K. Shi X. Wolfe R.S. Molecular, genetic, and biochemical characterization of the serC gene of Methanosarcina barkeri Fusaro Journal of Bacteriology 1996 178 19 5797-5802 Metcalf, W.W., Zhang, J.K., Shi, X., and Wolfe, R.S. (1996) Molecular, genetic, and biochemical characterization of the serC gene of Methanosarcina barkeri Fusaro. J Bacteriol 178: 5797-5802.0 (Pubitemid 26327686)
-
(1996)
Journal of Bacteriology
, vol.178
, Issue.19
, pp. 5797-5802
-
-
Metcalf, W.W.1
Zhang, J.-K.2
Shi, X.3
Wolfe, R.S.4
-
32
-
-
0030900723
-
A genetic system for Archaea of the genus Methanosarcina: Liposome- Mediated transformation and construction of shuttle vectors
-
DOI 10.1073/pnas.94.6.2626
-
Metcalf, W.W., Zhang, J.K., Apolinario, E., Sowers, K.R., and Wolfe, R.S. (1997) A genetic system for Archaea of the genus Methanosarcina: liposome-mediated transformation and construction of shuttle vectors. Proc Natl Acad Sci USA 94: 2626-2631. (Pubitemid 27136926)
-
(1997)
Proceedings of the National Academy of Sciences of the United States of America
, vol.94
, Issue.6
, pp. 2626-2631
-
-
Metcalf, W.W.1
Zhang, J.K.2
Apolinario, E.3
Sowers, K.R.4
Wolfe, R.S.5
-
33
-
-
0345676547
-
An anaerobic, intrachamber incubator for growth of Methanosarcina spp. on methanol-containing solid media
-
Metcalf, W.W., Zhang, J.K., and Wolfe, R.S. (1998) An anaerobic, intrachamber incubator for growth of Methanosarcina spp. on methanol-containing solid media. Appl Environ Microbiol 64: 768-770.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 768-770
-
-
Metcalf, W.W.1
Zhang, J.K.2
Wolfe, R.S.3
-
34
-
-
38349120713
-
Methyl sulfide production by a novel carbon monoxide metabolism in Methanosarcina acetivorans
-
Moran, J.J., House, C.H., Vrentas, J.M., and Freeman, K.H. (2008) Methyl sulfide production by a novel carbon monoxide metabolism in Methanosarcina acetivorans. Appl Environ Microbiol 74: 540-542.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 540-542
-
-
Moran, J.J.1
House, C.H.2
Vrentas, J.M.3
Freeman, K.H.4
-
35
-
-
33846116032
-
New developments in the InterPro database
-
Mulder, N.J., Apweiler, R., Attwood, T.K., Bairoch, A., Bateman, A., Binns, D., et al. (2007) New developments in the InterPro database. Nucleic Acids Res 35: D224-D228.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
-
36
-
-
0028197639
-
Transfer of Methanolobus siciliae to the genus Methanosarcina, naming it Methanosarcina siciliae, and emendation of the genus Methanosarcina
-
Ni S. Woese C.R. Aldrich H.C. Boone D.R. Transfer of Methanolobus siciliae to the genus Methanosarcina, naming it Methanosarcina siciliae, and emendation of the genus Methanosarcina International Journal of Systematic Bacteriology 1994 44 2 357-359 Ni, S., Woese, C.R., Aldrich, H.C., and Boone, D.R. (1994) Transfer of Methanolobus siciliae to the genus Methanosarcina, naming it Methanosarcina siciliae, and emendation of the genus Methanosarcina. Int J Syst Bacteriol 44: 357359. (Pubitemid 24116308)
-
(1994)
International Journal of Systematic Bacteriology
, vol.44
, Issue.2
, pp. 357-359
-
-
Ni, S.1
Woese, C.R.2
Aldrich, H.C.3
Boone, D.R.4
-
37
-
-
0021252308
-
Association of hydrogen metabolism with unitrophic or mixotrophic growth of Methanosarcina barkeri on carbon monoxide
-
O'Brien, J.M., Wolkin, R.H., Moench, T.T., Morgan, J.B., and Zeikus, J.G. (1984) Association of hydrogen metabolism with unitrophic or mixotrophic growth of Methanosarcina barkeri on carbon monoxide. J Bacteriol 158: 373-375.
-
(1984)
J Bacteriol
, vol.158
, pp. 373-375
-
-
O'Brien, J.M.1
Wolkin, R.H.2
Moench, T.T.3
Morgan, J.B.4
Zeikus, J.G.5
-
38
-
-
65949098426
-
In vivo role of three fused corrinoid/methyl transfer proteins in Methanosarcina acetivorans
-
Oelgeschlager, E., and Rother, M. (2009a) In vivo role of three fused corrinoid/methyl transfer proteins in Methanosarcina acetivorans. Mol Microbiol 72: 1260-1272.
-
(2009)
Mol Microbiol
, vol.72
, pp. 1260-1272
-
-
Oelgeschlager, E.1
Rother, M.2
-
39
-
-
60349105130
-
Influence of carbon monoxide on metabolite formation in Methanosarcina acetivorans
-
Oelgeschlager, E., and Rother, M. (2009b) Influence of carbon monoxide on metabolite formation in Methanosarcina acetivorans. FEMS Microbiol Lett 292: 254-260.
-
(2009)
FEMS Microbiol Lett
, vol.292
, pp. 254-260
-
-
Oelgeschlager, E.1
Rother, M.2
-
40
-
-
1642364959
-
Development of a markeriess genetic exchange method for Methanosarcina acetivorans C2A and its use in construction of new genetic tools for methanogenic Archaea
-
Pritchett, M.A., Zhang, J.K., and Metcalf, W.W. (2004) Development of a markeriess genetic exchange method for Methanosarcina acetivorans C2A and its use in construction of new genetic tools for methanogenic Archaea. Appl Environ Microbiol 70: 1425-1433.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1425-1433
-
-
Pritchett, M.A.1
Zhang, J.K.2
Metcalf, W.W.3
-
41
-
-
0031990302
-
Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strength
-
Qureshi, S.A., and Jackson, S.P. (1998) Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strength. Mol Cell 1: 389-400.
-
(1998)
Mol Cell
, vol.1
, pp. 389-400
-
-
Qureshi, S.A.1
Jackson, S.P.2
-
42
-
-
0001180411
-
Measurement and osmotic significance of beta-dimethylsulfoniopropionate in marine macroalgae
-
Reed, R.H. (1983) Measurement and osmotic significance of beta-dimethylsulfoniopropionate in marine macroalgae. Mar Biol Lett 4: 173-181.
-
(1983)
Mar Biol Lett
, vol.4
, pp. 173-181
-
-
Reed, R.H.1
-
43
-
-
10044290566
-
Anaerobic growth of Methanosarcina acetivorans C2A on carbon monoxide: An unusual way of life for a methanogenic archaeon
-
DOI 10.1073/pnas.0407486101
-
Rother M. Metcalf W.W. Anaerobic growth of Methanosarcina acetivorans C2A on carbon monoxide: An unusual way of life for a methanogenic archaeon Proceedings of the National Academy of Sciences of the United States of America 2004 101 48 16929-16934 DOI 10.1073/pnas.0407486101 Rother, M., and Metcalf, W.W. (2004) Anaerobic growth of Methanosarcina acetivorans C2A on carbon monoxide: an unusual way of life for a methanogenic archaeon. Proc Natl Acad Sci USA 101: 16929-16934. (Pubitemid 39601341)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.48
, pp. 16929-16934
-
-
Rother, M.1
Metcalf, W.W.2
-
44
-
-
23644446168
-
Methanol-dependent gene expression demonstrates that methyl-coenzyme M reductase is essential in Methanosarcina acetivorans C2A and allows isolation of mutants with defects in regulation of the methanol utilization pathway
-
DOI 10.1128/JB.187.16.5552-5559.2005
-
Rother M. Boccazzi P. Bose A. Pritchett M.A. Metcalf W.W. Methanol-dependent gene expression demonstrates that methyl-coenzyme M reductase is essential in Methanosarcina acetivorans C2A and allows isolation of mutants with defects in regulation of the methanol utilization pathway Journal of Bacteriology 2005 187 16 5552-5559 DOI 10.1128/JB.187.16.5552-5559.2005 Rother, M., Boccazzi, P., Bose, A., Pritchett, M.A., and Metcalf, W.W. (2005) Methanol-dependent gene expression demonstrates that methyl-coenzyme M reductase is essential in Methanosarcina acetivorans C2A and allows isolation of mutants with defects in regulation of the methanol utilization pathway. J Bacteriol 187: 5552-5559. (Pubitemid 41134289)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.16
, pp. 5552-5559
-
-
Rother, M.1
Boccazzi, P.2
Bose, A.3
Pritchett, M.A.4
Metcalf, W.W.5
-
45
-
-
35348823295
-
Genetic and proteomic analyses of CO utilization by Methanosarcina acetivorans
-
Rother, M., Oelgeschlager, E., and Metcalf, W.M. (2007) Genetic and proteomic analyses of CO utilization by Methanosarcina acetivorans. Arch Microbiol 188: 463-472.
-
(2007)
Arch Microbiol
, vol.188
, pp. 463-472
-
-
Rother, M.1
Oelgeschlager, E.2
Metcalf, W.M.3
-
46
-
-
0030879503
-
Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Zinc dependence and thermodynamics of the methanol:cob(I)alamin methyltransferase reaction
-
Sauer K. Thauer R.K. Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Zinc dependence and thermodynamics of the methanol:cob(I)alamin methyltransferase reaction European Journal of Biochemistry 1997 249 1 280-285 Sauer, K., and Thauer, R.K. (1997) Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Zinc dependence and thermodynamics of the methanol :cob(l) alamin methyltransferase reaction. Eur J Biochem 249: 280-285. (Pubitemid 27432622)
-
(1997)
European Journal of Biochemistry
, vol.249
, Issue.1
, pp. 280-285
-
-
Sauer, K.1
Thauer, R.K.2
-
47
-
-
0031024751
-
Methanol:Coenzyme M methyltransferase from methanosarcina barkeri purification, properties and encoding genes of the corrinoid protein MT1
-
Sauer K. Harms U. Thauer R.K. Methanol:Coenzyme M methyltransferase from methanosarcina barkeri purification, properties and encoding genes of the corrinoid protein MT1 European Journal of Biochemistry 1997 243 3 670-677 Sauer, K., Harms, U., and Thauer, R.K. (1997) Methanol: coenzyme M methyltransferase from Methanosarcina barkeri. Purification, properties and encoding genes of the corrinoid protein MT1. Eur J Biochem 243: 670-677. (Pubitemid 27073433)
-
(1997)
European Journal of Biochemistry
, vol.243
, Issue.3
, pp. 670-677
-
-
Sauer, K.1
Harms, U.2
Thauer, R.K.3
-
48
-
-
0027433047
-
Transcriptional regulation of the carbon monoxide dehydrogenase gene (cdhA) in Methanosarcina thermophila
-
Sowers, K.R., Thai, T.T., and Gunsalus, R.P. (1993a) Transcriptional regulation of the carbon monoxide dehydrogenase gene (cdhA) in Methanosarcina thermophila. J Biol Chem 268: 23172-23178.
-
(1993)
J Biol Chem
, vol.268
, pp. 23172-23178
-
-
Sowers, K.R.1
Thai, T.T.2
Gunsalus, R.P.3
-
49
-
-
0027504911
-
Disaggregation of Methanosarcina spp. & growth as single cells at elevated osmolarity
-
Sowers, K.R., Boone, J.E., and Gunsalus, R.P. (1993b) Disaggregation of Methanosarcina spp. & growth as single cells at elevated osmolarity. Appl Environ Microbiol 59: 3832-3839.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 3832-3839
-
-
Sowers, K.R.1
Boone, J.E.2
Gunsalus, R.P.3
-
50
-
-
1842453716
-
Controlling mRNA stability and translation with small, noncoding RNAs
-
DOI 10.1016/j.mib.2004.02.015, PII S1369527404000281
-
Storz G. Opdyke J.A. Zhang A. Controlling mRNA stability and translation with small, noncoding RNAs Current Opinion in Microbiology 2004 7 2 140-144 DOI 10.1016/j.mib.2004.02.015, PII S1369527404000281 Storz, G., Opdyke, J.A., and Zhang, A. (2004) Controlling mRNA stability and translation with small, noncoding RNAs. Curr Opin Microbiol 7: 140-144. (Pubitemid 38447046)
-
(2004)
Current Opinion in Microbiology
, vol.7
, Issue.2
, pp. 140-144
-
-
Storz, G.1
Opdyke, J.A.2
Zhang, A.3
-
51
-
-
0033566374
-
4folate methyltransferase involved in chloromethane utilization by Methylobacteriurn sp. strain CM4
-
DOI 10.1046/j.1432-1327.1999.00629.x
-
4folate methyltransferase involved in chloromethane utilization by Methylobacteriurn sp. strain CM4 European Journal of Biochemistry 1999 264 1 242-249 DOI 10.1046/j.1432-1327.1999.00629.x Studer, A., Vuilleumier, S., and Leisinger, T. (1999) Properties of the methylcobalamin: H4folate methyltransferase involved in chloromethane utilization by Methylobacterium sp. strain CM4. Eur J Biochem 264: 242-249. (Pubitemid 29385888)
-
(1999)
European Journal of Biochemistry
, vol.264
, Issue.1
, pp. 242-249
-
-
Studer, A.1
Vuilleumier, S.2
Leisinger, T.3
-
52
-
-
0034826431
-
Chloromethane: Tetrahydrofolate methyl transfer by two proteins from Methylobacterium chloromethanicum strain CM4
-
DOI 10.1046/j.1432-1327.2001.02182.x
-
Studer A. Stupperich E. Vuilleumier S. Leisinger T. Chloromethane: Tetrahydrofolate methyl transfer by two proteins from Methylobacterium chloromethanicum strain CM4 European Journal of Biochemistry 2001 268 10 2931-2938 DOI 10.1046/j.1432-1327.2001.02182.x Studer, A., Stupperich, E., Vuilleumier, S., and Leisinger, T. (2001) Chloromethane:tetrahydrofolate methyl transfer by two proteins from Methylobacterium chloromethanicum strain CM4. Eur J Biochem 268: 2931-2938. (Pubitemid 32862977)
-
(2001)
European Journal of Biochemistry
, vol.268
, Issue.10
, pp. 2931-2938
-
-
Studer, A.1
Stupperich, E.2
Vuilleumier, S.3
Leisinger, T.4
-
53
-
-
0030785505
-
Methylthiol:coenzyme M methyltransferase from Methanosarcina barkeri, an enzyme of methanogenesis from dimethylsulfide and methylmercaptopropionate
-
Tallant, T.C., and Krzycki, J.A. (1997) Methylthiol:coenzyme M methyltransferase from Methanosarcina barkeri, an enzyme of methanogenesis from dimethylsulfide and methylmercaptopropionate. J Bacteriol 179: 6902-6911.
-
(1997)
J Bacteriol
, vol.179
, pp. 6902-6911
-
-
Tallant, T.C.1
Krzycki, J.A.2
-
54
-
-
0035830845
-
The MtsA Subunit of the Methylthiol:Coenzyme M Methyltransferase of Methanosarcina barkeri Catalyses Both Half-reactions of Corrinoid-dependent Dimethylsulfide: Coenzyme M Methyl Transfer
-
DOI 10.1074/jbc.M007514200
-
Tallant T.C. Paul L. Krzycki J.A. The MtsA Subunit of the Methylthiol:Coenzyme M Methyltransferase of Methanosarcina barkeri Catalyses Both Half-reactions of Corrinoid-dependent Dimethylsulfide: Coenzyme M Methyl Transfer Journal of Biological Chemistry 2001 276 6 4485-4493 DOI 10.1074/jbc.M007514200 Tallant, T.C., Paul, L., and Krzycki, J.A. (2001) The MtsA subunit of the methylthiol:coenzyme M methyltransferase of Methanosarcina barkeri catalyses both half-reactions of corrinoid-dependent dimethylsulfide:coenzyme M methyl transfer. J Biol Chem 276: 4485-4493. (Pubitemid 37371543)
-
(2001)
Journal of Biological Chemistry
, vol.276
, Issue.6
, pp. 4485-4493
-
-
Tallant, T.C.1
Paul, L.2
Krzycki, J.A.3
-
55
-
-
0022552850
-
Novel regulatory mutants of the phosphate regulon in Escherichia coli K-12
-
Wanner B.L. Novel regulatory mutants of the phosphate regulon in Escherichia coli K-12 Journal of Molecular Biology 1986 191 1 39-58 Wanner, B.L. (1986) Novel regulatory mutants of the phosphate regulon in Escherichia coli K-12. J Mol Biol 191: 39-58. (Pubitemid 16018456)
-
(1986)
Journal of Molecular Biology
, vol.191
, Issue.1
, pp. 39-58
-
-
Wanner, B.L.1
-
56
-
-
23044513880
-
Loss of the mtr Operon in Methanosarcina blocks growth on methanol, but not methanogenesis, and reveals an unknown methanogenic pathway
-
Welander, P.V., and Metcalf, W.W. (2005) Loss of the mtr Operon in Methanosarcina blocks growth on methanol, but not methanogenesis, and reveals an unknown methanogenic pathway. Proc Natl Acad Sci USA 102: 10664-10669.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 10664-10669
-
-
Welander, P.V.1
Metcalf, W.W.2
-
57
-
-
0000253782
-
Physiology and ecology of methanogens
-
Ferry, J.G. (ed.). New York: Chapman & Hall
-
Zinder, S.H. (1993) Physiology and ecology of methanogens. In Methanogenesis: Ecology, Physiology, Biochemistry and Genetics. Ferry, J.G. (ed.). New York: Chapman & Hall, pp. 128-206.
-
(1993)
Methanogenesis: Ecology, Physiology, Biochemistry and Genetics
, pp. 128-206
-
-
Zinder, S.H.1
|