-
1
-
-
0034077514
-
Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors?
-
Baliga, N. S., Y. A. Goo, W. V. Ng, L. Hood, C. J. Daniels, and S. DasSarma. 2000. Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors? Mol. Microbiol. 36:1184-1185.
-
(2000)
Mol. Microbiol
, vol.36
, pp. 1184-1185
-
-
Baliga, N.S.1
Goo, Y.A.2
Ng, W.V.3
Hood, L.4
Daniels, C.J.5
DasSarma, S.6
-
2
-
-
0033823109
-
The orientation of DNA in an archaeal transcription initiation complex
-
Bartlett, M. S., M. Thomm, and E. P. Geiduschek. 2000. The orientation of DNA in an archaeal transcription initiation complex. Nat. Struct. Biol. 7:782-785.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 782-785
-
-
Bartlett, M.S.1
Thomm, M.2
Geiduschek, E.P.3
-
3
-
-
1242339612
-
Topography of the euryarchaeal transcription initiation complex
-
Bartlett, M. S., M. Thomm, and E. P. Geiduschek. 2004. Topography of the euryarchaeal transcription initiation complex. J. Biol. Chem. 279:5894-5903.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 5894-5903
-
-
Bartlett, M.S.1
Thomm, M.2
Geiduschek, E.P.3
-
4
-
-
0034745386
-
The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition
-
Bell, S. D., A. B. Brinkman, J. van der Oost, and S. P. Jackson. 2001. The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition. EMBO Rep. 2:133-138.
-
(2001)
EMBO Rep
, vol.2
, pp. 133-138
-
-
Bell, S.D.1
Brinkman, A.B.2
van der Oost, J.3
Jackson, S.P.4
-
5
-
-
0034724913
-
The role of transcription factor B in transcription initiation and promoter clearance in the archaeon Sulfolobus acidocaldarius
-
Bell, S. D., and S. P. Jackson. 2000. The role of transcription factor B in transcription initiation and promoter clearance in the archaeon Sulfolobus acidocaldarius. J. Biol. Chem. 275:12934-12940.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 12934-12940
-
-
Bell, S.D.1
Jackson, S.P.2
-
6
-
-
0033598809
-
Orientation of the transcription preinitiation complex in archaea
-
Bell, S. D., P. L. Kosa, P. B. Sigler, and S. P. Jackson. 1999. Orientation of the transcription preinitiation complex in archaea. Proc. Natl. Acad. Sci. USA 96:13662-13667.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 13662-13667
-
-
Bell, S.D.1
Kosa, P.L.2
Sigler, P.B.3
Jackson, S.P.4
-
7
-
-
1142274214
-
Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 angstroms
-
Bushnell, D. A., K. D. Westover, R. E. Davis, and R. D. Kornberg. 2004. Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 angstroms. Science 303:983-988.
-
(2004)
Science
, vol.303
, pp. 983-988
-
-
Bushnell, D.A.1
Westover, K.D.2
Davis, R.E.3
Kornberg, R.D.4
-
8
-
-
0141992120
-
Binding of TFIIB to RNA polymerase II: Mapping the binding site for the TFIIB zinc ribbon domain within the preinitiation complex
-
Chen, H. T., and S. Hahn. 2003. Binding of TFIIB to RNA polymerase II: mapping the binding site for the TFIIB zinc ribbon domain within the preinitiation complex. Mol. Cell 12:437-447.
-
(2003)
Mol. Cell
, vol.12
, pp. 437-447
-
-
Chen, H.T.1
Hahn, S.2
-
9
-
-
0032779428
-
Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro
-
Darcy, T. J., W. Hausner, D. E. Awery, A. M. Edwards, M. Thomm, and J. N. Reeve. 1999. Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro. J. Bacteriol. 181:4424-4429.
-
(1999)
J. Bacteriol
, vol.181
, pp. 4424-4429
-
-
Darcy, T.J.1
Hausner, W.2
Awery, D.E.3
Edwards, A.M.4
Thomm, M.5
Reeve, J.N.6
-
10
-
-
0027202710
-
Regulation of ribosomal RNA transcription by growth rate of the hyperthermophilic Archaeon, Pyrococcus furiosus
-
DiRuggiero, J., L. A. Achenbach, S. H. Brown, R. M. Kelly, and F. T. Robb. 1993. Regulation of ribosomal RNA transcription by growth rate of the hyperthermophilic Archaeon, Pyrococcus furiosus. FEMS Microbiol. Lett. 111:159-164.
-
(1993)
FEMS Microbiol. Lett
, vol.111
, pp. 159-164
-
-
DiRuggiero, J.1
Achenbach, L.A.2
Brown, S.H.3
Kelly, R.M.4
Robb, F.T.5
-
11
-
-
34248399625
-
General transcription factor specified global gene regulation in archaea
-
Facciotti, M. T., D. J. Reiss, M. Pan, A. Kaur, M. Vuthoori, R. Bonneau, P. Shannon, A. Srivastava, S. M. Donohoe, L. E. Hood, and N. S. Baliga. 2007. General transcription factor specified global gene regulation in archaea. Proc. Natl. Acad. Sci. USA 104:4630-4635.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 4630-4635
-
-
Facciotti, M.T.1
Reiss, D.J.2
Pan, M.3
Kaur, A.4
Vuthoori, M.5
Bonneau, R.6
Shannon, P.7
Srivastava, A.8
Donohoe, S.M.9
Hood, L.E.10
Baliga, N.S.11
-
12
-
-
1642540256
-
Photo-cross-linking of a purified preinitiation complex reveals central roles for the RNA polymerase II mobile clamp and TFIIE in initiation mechanisms
-
Forget, D., M. F. Langelier, C. Therien, V. Trinh, and B. Coulombe. 2004. Photo-cross-linking of a purified preinitiation complex reveals central roles for the RNA polymerase II mobile clamp and TFIIE in initiation mechanisms. Mol. Cell. Biol. 24:1122-1131.
-
(2004)
Mol. Cell. Biol
, vol.24
, pp. 1122-1131
-
-
Forget, D.1
Langelier, M.F.2
Therien, C.3
Trinh, V.4
Coulombe, B.5
-
13
-
-
37249018447
-
-
Grünberg, S., M. S. Bartlett, S. Naji, and M. Thomm. 5 October 2007, posting date. Transcription factor E is a part of transcription elongation complexes. J. Biol. Chem. doi:10.1074/jbc.M707371200.
-
Grünberg, S., M. S. Bartlett, S. Naji, and M. Thomm. 5 October 2007, posting date. Transcription factor E is a part of transcription elongation complexes. J. Biol. Chem. doi:10.1074/jbc.M707371200.
-
-
-
-
14
-
-
0035116309
-
TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEα
-
Hanzeika, B. L., T. J. Darcy, and J. N. Reeve. 2001. TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEα. J. Bacteriol. 183:1813-1818.
-
(2001)
J. Bacteriol
, vol.183
, pp. 1813-1818
-
-
Hanzeika, B.L.1
Darcy, T.J.2
Reeve, J.N.3
-
15
-
-
0029860589
-
Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase
-
Hausner, W., J. Wettach, C. Hethke, and M. Thomm. 1996. Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase. J. Biol. Chem. 271:30144-30148.
-
(1996)
J. Biol. Chem
, vol.271
, pp. 30144-30148
-
-
Hausner, W.1
Wettach, J.2
Hethke, C.3
Thomm, M.4
-
16
-
-
0029906412
-
A cell-free transcription system for the hyperthermophilic archaeon Pyrococcus furiosus
-
Hethke, C., A. C. Geerling, W. Hausner, W. M. de Vos, and M. Thomm. 1996. A cell-free transcription system for the hyperthermophilic archaeon Pyrococcus furiosus. Nucleic Acids Res. 24:2369-2376.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 2369-2376
-
-
Hethke, C.1
Geerling, A.C.2
Hausner, W.3
de Vos, W.M.4
Thomm, M.5
-
17
-
-
0033816775
-
Predicted highly expressed genes of diverse prokaryotic genomes
-
Karlin, S., and J. Mrazek. 2000. Predicted highly expressed genes of diverse prokaryotic genomes. J. Bacteriol. 182:5238-5250.
-
(2000)
J. Bacteriol
, vol.182
, pp. 5238-5250
-
-
Karlin, S.1
Mrazek, J.2
-
18
-
-
18844433039
-
Predicted highly expressed genes in archaeal genomes
-
Karlin, S., J. Mrazek, J. Ma, and L. Brocchieri. 2005. Predicted highly expressed genes in archaeal genomes. Proc. Natl. Acad. Sci. USA 102:7303-7308.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 7303-7308
-
-
Karlin, S.1
Mrazek, J.2
Ma, J.3
Brocchieri, L.4
-
19
-
-
0031866196
-
Functional and structural organization of Brf, the TFIIB-related component of the RNA polymerase III transcription initiation complex
-
Kassavetis, G. A., A. Kumar, E. Ramirez, and E. P. Geiduschek. 1998. Functional and structural organization of Brf, the TFIIB-related component of the RNA polymerase III transcription initiation complex. Mol. Cell. Biol. 18:5587-5599.
-
(1998)
Mol. Cell. Biol
, vol.18
, pp. 5587-5599
-
-
Kassavetis, G.A.1
Kumar, A.2
Ramirez, E.3
Geiduschek, E.P.4
-
20
-
-
0034981038
-
Preparation of components of archaeal transcription preinitiation complex
-
Korkhin, Y., O. Littlefield, P. J. Nelson, S. D. Bell, and P. B. Sigler. 2001. Preparation of components of archaeal transcription preinitiation complex. Methods Enzymol. 334:227-239.
-
(2001)
Methods Enzymol
, vol.334
, pp. 227-239
-
-
Korkhin, Y.1
Littlefield, O.2
Nelson, P.J.3
Bell, S.D.4
Sigler, P.B.5
-
21
-
-
0028983409
-
Transcription in archaea: Similarity to that in eucarya
-
Langer, D., J. Hain, P. Thuriaux, and W. Zillig. 1995. Transcription in archaea: similarity to that in eucarya. Proc. Natl. Acad. Sci. USA 92:5768-5772.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 5768-5772
-
-
Langer, D.1
Hain, J.2
Thuriaux, P.3
Zillig, W.4
-
22
-
-
0033598826
-
The structural basis for the oriented assembly of a TBP/TFB/promoter complex
-
Littlefield, O., Y. Korkhin, and P. B. Sigler. 1999. The structural basis for the oriented assembly of a TBP/TFB/promoter complex. Proc. Natl. Acad. Sci. USA 96:13668-13673.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 13668-13673
-
-
Littlefield, O.1
Korkhin, Y.2
Sigler, P.B.3
-
23
-
-
0028176170
-
Transcription factor IID in the archaea: Sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes
-
Marsh, T. L., C. I. Reich, R. B. Whitelock, and G. J. Olsen. 1994. Transcription factor IID in the archaea: sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes. Proc. Natl. Acad. Sci. USA 91:4180-4184.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 4180-4184
-
-
Marsh, T.L.1
Reich, C.I.2
Whitelock, R.B.3
Olsen, G.J.4
-
24
-
-
33745842952
-
A DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex
-
Miller, G., and S. Hahn. 2006. A DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex. Nat. Struct. Mol. Biol. 13:603-610.
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 603-610
-
-
Miller, G.1
Hahn, S.2
-
25
-
-
34249652975
-
The RPB7 orthologue E′ is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation
-
Naji, S., S. Grünberg, and M. Thomm. 2007. The RPB7 orthologue E′ is required for transcriptional activity of a reconstituted archaeal core enzyme at low temperatures and stimulates open complex formation. J. Biol. Chem. 282:11047-11057.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 11047-11057
-
-
Naji, S.1
Grünberg, S.2
Thomm, M.3
-
26
-
-
0028908091
-
In vivo definition of an archaeal promoter
-
Palmer, J. R., and C. J. Daniels. 1995. In vivo definition of an archaeal promoter. J. Bacteriol. 177:1844-1849.
-
(1995)
J. Bacteriol
, vol.177
, pp. 1844-1849
-
-
Palmer, J.R.1
Daniels, C.J.2
-
27
-
-
0028019848
-
Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast
-
Pinto, I., W. H. Wu, J. G. Na, and M. Hampsey. 1994. Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast. J. Biol. Chem. 269:30569- 30573.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 30569-30573
-
-
Pinto, I.1
Wu, W.H.2
Na, J.G.3
Hampsey, M.4
-
28
-
-
0031990302
-
Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strength
-
Qureshi, S. A., and S. P. Jackson. 1998. Sequence-specific DNA binding by the S. shibatae TFIIB homolog, TFB, and its effect on promoter strength. Mol. Cell 1:389-400.
-
(1998)
Mol. Cell
, vol.1
, pp. 389-400
-
-
Qureshi, S.A.1
Jackson, S.P.2
-
29
-
-
0029042364
-
Molecular cloning of the transcription factor TFIIB homolog from Sulfolobus shibatae
-
Qureshi, S. A., B. Khoo, P. Baumann, and S. P. Jackson. 1995. Molecular cloning of the transcription factor TFIIB homolog from Sulfolobus shibatae. Proc. Natl. Acad. Sci. USA 92:6077-6081.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 6077-6081
-
-
Qureshi, S.A.1
Khoo, B.2
Baumann, P.3
Jackson, S.P.4
-
30
-
-
1642453651
-
Transcription factor B contacts promoter DNA near the transcription start site of the archaeal transcription initiation complex
-
Renfrow, M. B., N. Naryshkin, L. M. Lewis, H. T. Chen, R. H. Ebright, and R. A. Scott. 2004. Transcription factor B contacts promoter DNA near the transcription start site of the archaeal transcription initiation complex. J. Biol. Chem. 279:2825-2831.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 2825-2831
-
-
Renfrow, M.B.1
Naryshkin, N.2
Lewis, L.M.3
Chen, H.T.4
Ebright, R.H.5
Scott, R.A.6
-
31
-
-
0035142375
-
Genomic sequence of hyperthermophile, Pyrococcus furiosus: Implications for physiology and enzymology
-
Robb, F. T., D. L. Maeder, J. R. Brown, J. DiRuggiero, M. D. Stump, R. K. Yeh, R. B. Weiss, and D. M. Dunn. 2001. Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology. Methods Enzymol. 330:134-157.
-
(2001)
Methods Enzymol
, vol.330
, pp. 134-157
-
-
Robb, F.T.1
Maeder, D.L.2
Brown, J.R.3
DiRuggiero, J.4
Stump, M.D.5
Yeh, R.K.6
Weiss, R.B.7
Dunn, D.M.8
-
32
-
-
0028907529
-
rpoE, the gene encoding the second heat-shock sigma factor, sigma E, in Escherichia coli
-
Rouviere, P. E., A. De Las Penas, J. Mecsas, C. Z. Lu, K. E. Rudd, and C. A. Gross. 1995. rpoE, the gene encoding the second heat-shock sigma factor, sigma E, in Escherichia coli. EMBO J. 14:1032-1042.
-
(1995)
EMBO J
, vol.14
, pp. 1032-1042
-
-
Rouviere, P.E.1
De Las Penas, A.2
Mecsas, J.3
Lu, C.Z.4
Rudd, K.E.5
Gross, C.A.6
-
33
-
-
0028361219
-
The TATA-binding protein: A general transcription factor in eukaryotes and archaebacteria
-
Rowlands, T., P. Baumann, and S. P. Jackson. 1994. The TATA-binding protein: a general transcription factor in eukaryotes and archaebacteria. Science 264:1326-1329.
-
(1994)
Science
, vol.264
, pp. 1326-1329
-
-
Rowlands, T.1
Baumann, P.2
Jackson, S.P.3
-
34
-
-
33847118046
-
TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro
-
Santangelo, T. J., L. Cubonova, C. L. James, and J. N. Reeve. 2007. TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro. J. Mol. Biol. 367:344-357.
-
(2007)
J. Mol. Biol
, vol.367
, pp. 344-357
-
-
Santangelo, T.J.1
Cubonova, L.2
James, C.L.3
Reeve, J.N.4
-
35
-
-
0037494947
-
Whole-genome DNA microarray analysis of a hyperthermophile and an archaeon: Pyrococcus furiosus grown on carbohydrates or peptides
-
Schut, G. J., S. D. Brehm, S. Datta, and M. W. Adams. 2003. Whole-genome DNA microarray analysis of a hyperthermophile and an archaeon: Pyrococcus furiosus grown on carbohydrates or peptides. J. Bacteriol. 185:3935-3947.
-
(2003)
J. Bacteriol
, vol.185
, pp. 3935-3947
-
-
Schut, G.J.1
Brehm, S.D.2
Datta, S.3
Adams, M.W.4
-
36
-
-
0035212028
-
DNA microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus: Evidence for a new type of sulfur-reducing enzyme complex
-
Schut, G. J., J. Zhou, and M. W. Adams. 2001. DNA microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus: evidence for a new type of sulfur-reducing enzyme complex. J. Bacteriol. 183:7027-7036.
-
(2001)
J. Bacteriol
, vol.183
, pp. 7027-7036
-
-
Schut, G.J.1
Zhou, J.2
Adams, M.W.3
-
37
-
-
0037393082
-
Heat shock response by the hyperthermophilic archaeon Pyrococcus furiosus
-
Shockley, K. R., D. E. Ward, S. R. Chhabra, S. B. Conners, C. I. Montera, and R. M. Kelly. 2003. Heat shock response by the hyperthermophilic archaeon Pyrococcus furiosus. Appl. Environ Microbiol. 69:2365-2371.
-
(2003)
Appl. Environ Microbiol
, vol.69
, pp. 2365-2371
-
-
Shockley, K.R.1
Ward, D.E.2
Chhabra, S.R.3
Conners, S.B.4
Montera, C.I.5
Kelly, R.M.6
-
38
-
-
0042232576
-
Analysis of the open region and of DNA-protein contacts of archaeal RNA polymerase transcription complexes during transition from initiation to elongation
-
Spitalny, P., and M. Thomm. 2003. Analysis of the open region and of DNA-protein contacts of archaeal RNA polymerase transcription complexes during transition from initiation to elongation. J. Biol. Chem. 278:30497-30505.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 30497-30505
-
-
Spitalny, P.1
Thomm, M.2
-
39
-
-
0024283951
-
An archaebacterial promoter element for stable RNA genes with homology to the TATA box of higher eukaryotes
-
Thomm, M., and G. Wich. 1988. An archaebacterial promoter element for stable RNA genes with homology to the TATA box of higher eukaryotes. Nucleic Acids Res. 16:151-163.
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 151-163
-
-
Thomm, M.1
Wich, G.2
-
40
-
-
0037414803
-
A novel archaeal transcriptional regulator of heat shock response
-
Vierke, G., A. Engelmann, C. Hebbeln, and M. Thomm. 2003. A novel archaeal transcriptional regulator of heat shock response. J. Biol. Chem. 278:18-26.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 18-26
-
-
Vierke, G.1
Engelmann, A.2
Hebbeln, C.3
Thomm, M.4
-
41
-
-
24344504002
-
Direct modulation of RNA polymerase core functions by basal transcription factors
-
Werner, F., and R. O. Weinzierl. 2005. Direct modulation of RNA polymerase core functions by basal transcription factors. Mol. Cell Biol. 25:8344-8355.
-
(2005)
Mol. Cell Biol
, vol.25
, pp. 8344-8355
-
-
Werner, F.1
Weinzierl, R.O.2
|