High-speed AFM imaging

Current Opinion in Structural Biology

Volumn 28, Issue 1, 2014, Pages 63-68

  Ando, Toshio ^a,b  

^a KANAZAWA UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ANISOTROPY; ATOMIC FORCE MICROSCOPE; ATOMIC FORCE MICROSCOPY; CAMERA; DIODE; FEEDBACK SYSTEM; HIGH SPEED ATOMIC FORCE MICROSCOPY; IMAGE ANALYSIS; IMAGE PROCESSING; IMAGING SYSTEM; MOLECULAR DYNAMICS; POLARIZATION; PROCESS DESIGN; PROTEIN CONFORMATION; PROTEIN DNA INTERACTION; PROTEIN PURIFICATION; REVIEW; CHEMISTRY; PROCEDURES;

PROTEIN;

MICROSCOPY, ATOMIC FORCE; PROTEINS;

EID: 84905833890     PISSN: 0959440X     EISSN: 1879033X     Source Type: Journal    
DOI: 10.1016/j.sbi.2014.07.011     Document Type: Review

References (45)

1. Joo H., Balci H., Ishitsuka Y., Buranachai C., Ha T. Advances in single-molecule fluorescence methods for molecular biology. Annu Rev Biochem 2008, 77:51-76.
2. Moerner W.E. New directions in single-molecule imaging and analysis. Proc Natl Acad Sci U S A 2007, 104:12596-12601.
3. Neuman K.C., Block S.M. Optical trapping. Rev Sci Instrum 2004, 75:2787-2809.
4. Huang B., Bates M., Zhuang X. Super-resolution fluorescence microscopy. Annu Rev Biochem 2009, 78:993-1016.
5. Vianni M.B., Pietrasanta L.I., Thompson J.B., Chand A., Gebeshuber I.C., Kindt J.H., Richter M., Hansma H.G., Hansma P.K. Probing protein-protein interactions in real time. Nat Struct Biol Mol Biol 2000, 7:644-647.
6. Ando T., Kodera N., Takai E., Maruyama D., Saito K., Toda A. A high-speed atomic force microscope for studying biological macromolecules. Proc Natl Acad Sci U S A 2001, 98:12468-12472.
7. Ando T., Uchihashi T., Fukuma T. High-speed atomic force microscopy for nano-visualization of dynamic biomolecular processes. Prog Surf Sci 2008, 83:337-437.
8. Ando T., Uchihashi T., Kodera N. High-speed AFM and applications to biomolecular systems. Annu Rev Biophys 2013, 42:393-414.
9. Ando T. High-speed atomic force microscopy coming of age. Nanotechnology 2012, 23:062001.
10. Ando T., Uchihashi T., Scheuring S. Filming biomolecular processes by high-speed atomic force microscopy. Chem Rev 2014, 114:3120-3188.
11. Yamashita H., Taoka A., Uchihashi T., Asano T., Ando T., Fukumori Y. Single molecule imaging on living bacterial cell surface by high-speed AFM. J Mol Biol 2012, 422:300-309.
12. Colom A., Casuso I., Rico F., Scheuring S. A hybrid high-speed atomic force-optical microscope for visualizing single membrane proteins on eukaryotic cells. Nat Commun 2013, 4:2155.
13. Watanabe H., Uchihashi T., Kobashi T., Shibata M., Nishiyama J., Yasuda R., Ando T. Wide-area scanner for high-speed atomic force microscopy. Rev Sci Instrum 2013, 84:053702.
14. Uchihashi T., Kodera N., Ando T. Guide to video recording of structure dynamics and dynamic processes of proteins by high-speed atomic force microscopy. Nat Protoc 2012, 7:1193-1206.
15. Shibata M., Uchihashi T., Yamashita H., Kandori H., Ando T. Structural changes in bacteriorhodopsin in response to alternate illumination observed by high-speed atomic force microscopy. Angew Chem Int Ed 2011, 50:4410-4413.
16. Shibata M., Yamashita H., Uchihashi T., Kandori H., Ando T. High-speed atomic force microscopy shows dynamic molecular processes in photo-activated bacteriorhodopsin. Nat Nanotechnol 2010, 5:208-212.
17. Yamashita H., Inoue K., Shibata M., Uchihashi T., Sasaki J., Kandori H., Ando T. Role of trimer-trimer interaction of bacteriorhodopsin studied by optical spectroscopy and high-speed atomic force microscopy. J Struct Biol 2013, 184:2-11.
18. 1-ATPase. Science 2011, 333:755-758.
19. 4 receptor/channel. PLoS Biol 2009, 7:e1000103.
20. 2+-pump captured. FEBS J 2011, 278:3025-3031.
21. Suzuki Y., Goetze T.A., Stroebel D., Balasuriya D., Yoshimura S.H., Henderson R.M., Paoletti P., Takeyasu K., Edwardson J.M. Visualization of structural changes accompanying activation of N-methyl-d-aspartate (NMDA) receptors using fast-scan atomic force microscopy imaging. J Biol Chem 2013, 288:778-784.
22. Yokokawa M., Carnally S.M., Henderson R.M., Takeyasu K., Edwardson J.M. Acid-sensing ion channel (ASIC) 1a undergoes a height transition in response to acidification. FEBS Lett 2010, 584:3107-3110.
23. Sugimoto S., Yamanaka K., Nishikori S., Miyagi A., Ando T., Ogura T. AAA+ chaperone ClpX regurates dynamics of prokaryotic cytoskeletal protein FtsZ. J Biol Chem 2010, 285:6648-6657.
24. Noi K., Yamamoto D., Nishikori S., Arita-Morioka K., Ando T., Ogura T. High-speed atomic force microscopic observation of ATP-dependent rotation of the AAA+ chaperone p97. Structure 2013, 21:1992-2002.
25. Kodera N., Yamamoto D., Ishikawa R., Ando T. Video imaging of walking myosin V by high-speed atomic force microscopy. Nature 2010, 468:72-76.
26. Colom A., Casuso I., Boudier T., Scheuring S. High-speed atomic force microscopy: cooperative adhesion and dynamic equilibrium of junctional microdomain membrane proteins. J Mol Biol 2012, 423:249-256.
27. Casuso I., Khao J., Chami M., Paul-Gilloteaux P., Husain M., Duneau J.-P., Stahlberg H., Sturgis J.N., Scheuring S. Characterization of the motion of membrane proteins using high-speed atomic force microscopy. Nat Nanotechnol 2012, 7:525-529.
28. Yamamoto D., Uchihashi T., Kodera N., Ando T. Anisotropic diffusion of point defects in two-dimensional crystal of streptavidin observed by high-speed atomic force microscopy. Nanotechnology 2008, 19:384009.
29. Casuso I., Sens P., Rico F., Scheuring S. Experimental evidence for membrane-mediated protein-protein interaction. Biophys J 2010, 99:L47-L49.
30. Yamashita H., Voïtchovsky K., Uchihashi T., Antoranz Contera S., Ryan J.F., Ando T. Dynamics of bacteriorhodopsin 2D crystal observed by high-speed atomic force microscopy. J Struct Biol 2009, 167:153-158.
31. Milhiet P.-E., Yamamoto D., Berthoumieu O., Dosset P., Le Grimellec C., Verdier J.-M., Marchal S., Ando T. Deciphering the structure, growth and assembly of amyloid-like fibrils using high-speed atomic force microscopy. PLoS ONE 2010, 5:e13240.
32. Yilmaz N., Yamada T., Greimel P., Uchihashi T., Ando T., Kobayashi T. Real-time visualization of assembling of a sphingomyelin-specific toxin. Biophys J 2013, 105:1397-1405.
33. Miyagi A., Tsunaka Y., Uchihashi T., Mayanagi K., Hirose S., Morikawa K., Ando T. Visualization of intrinsically disordered regions of proteins by high-speed atomic force microscopy. Chem Phys Chem 2008, 9:1859-1866.
34. Hashimoto M., Kodera N., Tsunaka Y., Oda M., Tanimoto M., Ando T., Morikawa K., Tate S. Phosphorylation-coupled intramolecular dynamics of unstructured regions in chromatin remodeler FACT. Biophys J 2013, 104:2222-2234.
35. Suzuki A., Hori T., Nishino T., Usukura J., Miyagi A., Morikawa K., Fukagawa T. Spindle microtubules generate tension-dependent changes in the distribution of inner kinetochore proteins. J Cell Biol 2011, 193:125-140.
36. Igarashi K., Uchihashi T., Koivula A., Wada M., Kimura S., Okamoto T., Penttilä M., Ando T., Samejima M. Traffic jams reduce hydrolytic efficiency of cellulase on cellulose surface. Science 2011, 333:1279-1282.
37. Shlyakhtenko L.S., Lushnikov A.Y., Miyagi A., Lyubchenko Y.L. Specificity of binding of single-stranded DNA-binding protein to its target. Biochemistry 2012, 51:1500-1509.
38. Suzuki Y., Gilmore J.L., Yoshimura S.H., Henderson R.M., Lyubchenko Y.L., Takeyasu K. Visual analysis of concerted cleavage by type IIF restriction enzyme SfiI in subsecond time region. Biophys J 2011, 101:2992-2998.
39. Wickham S.F.J., Endo M., Katsuda Y., Hidaka K., Bath J., Sugiyama H., Turberfield A.J. Direct observation of stepwise movement of a synthetic molecular transporter. Nat Nanotechnol 2011, 6:166-169.
40. Miyagi A., Ando T., Lyubchenko Y.L. Dynamics of nucleosomes assessed with time-lapse high-speed atomic force microscopy. Biochemistry 2011, 50:7901-7908.
41. Braunsmann C., Schäffer T.E. High-speed atomic force microscopy for large scan sizes using small cantilevers. Nanotechnology 2010, 21:225705.
42. Fantner G.E., Barbero R.J., Gray D.S., Belcher A.M. Kinetics of antimicrobial peptide activity measured on individual bacterial cells using high-speed atomic force microscopy. Nat Nanotechnol 2010, 5:280-285.
43. Fukuda S., Uchihashi T., Iino R., Okazaki Y., Yoshida M., Igarashi K., Ando T. High-speed atomic force microscope combined with single-molecule fluorescence microscope. Rev Sci Instrum 2013, 84:073706.
44. Gerton J.M., Wade L.A., Lessard G.A., Ma Z., Quake S.R. Tip-enhanced fluorescence microscopy at 10 nanometer resolution. Phys Rev Lett 2004, 93:180801.
45. Hayazawa N., Inouye Y., Kawata S. Evanescent field excitation and measurement of dye fluorescence in a metallic probe near-field scanning optical microscope. J Microsc 1999, 194:472-476.