High-speed atomic force microscope combined with single-molecule fluorescence microscope

Review of Scientific Instruments

Volumn 84, Issue 7, 2013, Pages

  Fukuda, Shingo ^a   Uchihashi, Takayuki ^a   Iino, Ryota ^b   Okazaki, Yasutaka ^a   Yoshida, Masato ^a   Igarashi, Kiyohiko ^c   Ando, Toshio ^a  

^a KANAZAWA UNIVERSITY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN FILAMENT; CANTILEVER MOTION; COMBINED SYSTEM; CRYSTALLINE FIBERS; MICROSCOPY SYSTEMS; OPTICAL LEVER; SINGLE-MOLECULE FLUORESCENCES; TOTAL INTERNAL REFLECTION FLUORESCENCE MICROSCOPY;

ATOMIC FORCE MICROSCOPY; REFRACTIVE INDEX;

PROTEINS;

CHITINASE; MYOSIN V;

ARTICLE; ATOMIC FORCE MICROSCOPY; EQUIPMENT; FLUORESCENCE MICROSCOPY; LASER; METABOLISM; MOVEMENT (PHYSIOLOGY); TIME; DEVICES;

CHITINASE; LASERS; MICROSCOPY, ATOMIC FORCE; MICROSCOPY, FLUORESCENCE; MOVEMENT; MYOSIN TYPE V; TIME FACTORS;

EID: 84882257251     PISSN: 00346748     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4813280     Document Type: Article

References (47)

1. T. Ando, N. Kodera, E. Takai, D. Maruyama, K. Saito, and A. Toda, Proc. Natl. Acad. Sci. U.S.A. 98, 12468 (2001). 10.1073/pnas.211400898
2. N. Kodera, H. Yamashita, and T. Ando, Rev. Sci. Instrum. 76, 053708 (2005). 10.1063/1.1903123
3. T. Ando, T. Uchihashi, N. Kodera, A. Miyagi, R. Nakakita, H. Yamashita, and K. Matada, J. Surf. Sci. Nanotechnol. 3, 384 (2005). 10.1380/ejssnt.2005.384
4. M. B. Viani, T. E. Schäffer, G. T. Paloczi, L. I. Pietrasanta, B. L. Smith, J. B. Thompson, M. Richter, M. Rief, H. E. Gaub, K. W. Plaxco, A. N. Cleland, H. G. Hansma, and P. K. Hansma, Rev. Sci. Instrum. 70, 4300 (1999). 10.1063/1.1150069
5. G. E. Fantner, P. Hegarty, J. H. Kindt, G. Schitter, G. A. G. Cidade, and P. K. Hansma, Rev. Sci. Instrum. 76, 026118 (2005). 10.1063/1.1850651
6. G. Fantner, G. Schitter, J. H. Kindt, T. Ivanov, K. Ivanova, R. Patel, N. Holten-Andersen, J. Adams, P. J. Thurner, I. W. Rangelow, and P. K. Hansma, Ultramicroscopy 106, 881 (2006). 10.1016/j.ultramic.2006.01.015
7. N. Kodera, M. Sakashita, and T. Ando, Rev. Sci. Instrum. 77, 083704 (2006). 10.1063/1.2336113
8. T. Ando, T. Uchihashi, and T. Fukuma, Prog. Surf. Sci. 83, 337 (2008). 10.1016/j.progsurf.2008.09.001
9. T. Ando, Nanotechnology 23, 062001 (2012). 10.1088/0957-4484/23/6/062001
10. N. Kodera, D. Yamamoto, R. Ishikawa, and T. Ando, Nature (London) 468, 72 (2010). 10.1038/nature09450
11. T. Uchihashi, R. Iino, T. Ando, and H. Noji, Science 333, 755 (2011). 10.1126/science.1205510
12. M. Shibata, H. Yamashita, T. Uchihashi, H. Kandori, and T. Ando, Nat. Nanotechnol. 5, 208 (2010). 10.1038/nnano.2010.7
13. K. Igarashi, T. Uchihashi, A. Koivula, M. Wada, S. Kimura, T. Okamoto, M. Penttilä, T. Ando, and M. Samejima, Science 333, 1279 (2011). 10.1126/science.1208386
14. M. Yokokawa, C. Wada, T. Ando, N. Sakai, A. Yagi, S. H. Yoshimura, and K. Takeyasu, EMBO J. 25, 4567 (2006). 10.1038/sj.emboj.7601326
15. D. Yamamoto, T. Uchihashi, N. Kodera, and T. Ando, Nanotechnology 19, 384009 (2008). 10.1088/0957-4484/19/38/384009
16. I. Casuso, J. Khao, M. Chami, P. Paul-Gilloteaux, M. Husain, J. P. Duneau, H. Stahlberg, J. N. Sturgis, and S. Scheuring, Nat. Nanotechnol. 7, 525 (2012). 10.1038/nnano.2012.109
17. A. Colom, I. Casuso, T. Boudier, and S. Scheuring, J. Mol. Biol. 423, 249 (2012). 10.1016/j.jmb.2012.07.004
18. C. Stroh, H. Wang, R. Bash, B. Ashcroft, J. Nelson, H. Gruber, D. Lohr, S. M. Lindsay, and P. Hinterdorfer, Proc. Natl. Acad. Sci. U.S.A. 101, 12503 (2004). 10.1073/pnas.0403538101
19. P. Hinterdorfer and Y. F. Dufrêne, Nat. Methods 3, 347 (2006). 10.1038/nmeth871
20. Y. Sako and T. Yanagida, Nat. Rev. Mol. Cell Biol. 4, SS1 (2003). 10.1038/nrm1193
21. C. Joo, H. Balci, Y. Ishitsuka, C. Buranachai, and T. Ha, Annu. Rev. Biochem. 77, 51 (2008). 10.1146/annurev.biochem.77.070606.101543
22. H. Park, E. Toprak, and P. R. Selvin, Q. Rev. Biophys. 40, 87 (2007). 10.1017/S0033583507004611
23. B. Huang, M. Bates, and X. Zhuang, Annu. Rev. Biochem. 78, 993 (2009). 10.1146/annurev.biochem.77.061906.092014
24. C. A. J. Putman, H. G. Hansma, H. E. Gaub, and P. K. Hansma, Langmuir 8, 3014 (1992). 10.1021/la00048a027
25. H. Nakajima, Y. Kunioka, K. Nakano, K. Shimizu, M. Seto, and T. Ando, Biochem. Biophys. Res. Commun. 234, 178 (1997). 10.1006/bbrc.1997.6612
26. J. Gorelik, A. Shevchuk, and M. Ramalho, Proc. Natl. Acad. Sci. U.S.A. 99, 16018 (2002). 10.1073/pnas.252458399
27. A. B. Mathur, G. A. Truskey, and W. M. Reichert, Biophys. J. 78, 1725 (2000). 10.1016/S0006-3495(00)76724-5
28. S. Nishida, Y. Funabashi, and A. Ikai, Ultramicroscopy 91, 269 (2002). 10.1016/S0304-3991(02)00108-0
29. S. Hafizovic, D. Barrettino, T. Volden, J. Sedivy, K. Kirsten, O. Brand, and A. Hierlemann, Proc. Natl. Acad. Sci. U.S.A. 101, 17011 (2004). 10.1073/pnas.0405725101
30. R. Kassies, K. O. van der Werf, A. Lenferink, C. N. Hunter, J. D. Olsen, V. Subramaniam, and C. Otto, J. Microsc. 217, 109 (2005). 10.1111/j.0022-2720. 2005.01428.x
31. L. Peng, B. J. Stephens, K. Bonin, R. Cubicciotti, and M. Guthold, Microsc. Res. Tech. 70, 372 (2007). 10.1002/jemt.20421
32. H. Gumpp, S. W. Stahl, M. Strackharn, E. M. Puchner, and H. E. Gaub, Rev. Sci. Instrum. 80, 063704 (2009). 10.1063/1.3148224
33. M. Tokunaga, K. Kitamura, K. Saito, A. H. Iwane, and T. Yanagida, Biochem. Biophys. Res. Commun. 235, 47 (1997). 10.1006/bbrc.1997.6732
34. K. O. van der Werf, C. A. J. Putman, B. G. de Grooth, F. B. Segerink, E. H. Schipper, N. F. van Hulst, and J. Greve, Rev. Sci. Instrum. 64, 2892 (1993). 10.1063/1.1144378
35. K. Nakano, Rev. Sci. Instrum. 69, 1406 (1998). 10.1063/1.1148774
36. M. Hipp, H. Bielefeldt, J. Colchero, O. Marti, and J. Mlynek, Ultramicroscopy 42-44, 1498 (1992). 10.1016/0304-3991(92)90472-V
37. C. Neagu, K. O. van der Werf, C. A. J. Putman, Y. M. Kraan, B. G. de Grooth, N. F. van Hulst, and J. Greve, J. Struct. Biol. 112, 32 (1994). 10.1006/jsbi.1994.1004
38. T. Tachizaki, T. Muroya, O. Matsuda, Y. Sugawara, D. H. Hurley, and O. B. Wright, Rev. Sci. Instrum. 77, 043713 (2006). 10.1063/1.2194518
39. G. Schitter and A. Stemmer, IEEE Trans. Control Syst. Technol. 12, 449 (2004). 10.1109/TCST.2004.824290
40. T. Ando, T. Uchihashi, and N. Kodera, Jpn. J. Appl. Phys. 51, 08KA02 (2012). 10.1143/JJAP.51.08KA02
41. T. Fukuma, M. Kimura, K. Kobayashi, K. Matsushige, and H. Yamada, Rev. Sci. Instrum. 76, 053704 (2005). 10.1063/1.1896938
42. D. Yamamoto, T. Uchihashi, N. Kodera, H. Yamashita, S. Nishikori, T. Ogura, M. Shibata, and T. Ando, Methods Enzymol. 475, 541 (2010). 10.1016/S0076-6879(10)75020-5
43. T. Uchiyama, F. Katouno, N. Nikaidou, T. Nonaka, J. Sugiyama, and T. Watanabe, J. Biol. Chem. 276, 41343 (2001). 10.1074/jbc.M103610200
44. H. Watanabe, T. Uchihashi, T. Kobashi, M. Shibata, J. Nishiyama, R. Yasuda, and T. Ando, Rev. Sci. Instrum. 84, 053702 (2013). 10.1063/1.4803449
45. K. I. Willig, S. O. Rizzoli, V. Westphal, R. Jahn, and S. W. Hell, Nature (London) 440, 935 (2006). 10.1038/nature04592
46. M. J. Rust, M. Bates, and X. W. Zhuang, Nat. Methods 3, 793 (2006). 10.1038/nmeth929
47. E. Betzig, G. H. Patterson, R. Sougrat, O. W. Lindwasser, S. Olenych, J. S. Bonifacino, M. W. Davidson, J. Lippincott-Schwaetz, and H. F. Hess, Science 313, 1642 (2006). 10.1126/science.1127344