메뉴 건너뛰기




Volumn 5, Issue AUG, 2014, Pages

Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocytic host cells

Author keywords

Host pathogen interaction; Human cell lines; Label free quantitation; Proteomics; Staphylococcus aureus

Indexed keywords


EID: 84905651918     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2014.00392     Document Type: Article
Times cited : (36)

References (49)
  • 1
    • 0030158265 scopus 로고    scopus 로고
    • Staphylococcus aureus invasion of bovine mammary epithelial cells
    • doi: 10.3168/jds.S0022-0302(96)76454-8
    • Almeida, R. A., Matthews, K. R., Cifrian, E., Guidry, A. J., and Oliver, S. P. (1996). Staphylococcus aureus invasion of bovine mammary epithelial cells. J. Dairy Sci. 79, 1021-1026. doi: 10.3168/jds.S0022-0302(96)76454-8
    • (1996) J. Dairy Sci. , vol.79 , pp. 1021-1026
    • Almeida, R.A.1    Matthews, K.R.2    Cifrian, E.3    Guidry, A.J.4    Oliver, S.P.5
  • 2
    • 64249158831 scopus 로고    scopus 로고
    • Virulence factors of Staphylococcus aureus induce Erk-MAP kinase activation and c-Fos expression in S9 and 16HBE14o- human airway epithelial cells
    • doi: 10.1152/ajplung.90498.2008
    • Below, S., Konkel, A., Zeeck, C., Müller, C., Kohler, C., Engelmann, S., et al. (2009). Virulence factors of Staphylococcus aureus induce Erk-MAP kinase activation and c-Fos expression in S9 and 16HBE14o- human airway epithelial cells. Am. J. Physiol. Lung Cell. Mol. Physiol. 296, L470-L479. doi: 10.1152/ajplung.90498.2008
    • (2009) Am. J. Physiol. Lung Cell. Mol. Physiol. , vol.296
    • Below, S.1    Konkel, A.2    Zeeck, C.3    Müller, C.4    Kohler, C.5    Engelmann, S.6
  • 3
    • 84872268114 scopus 로고    scopus 로고
    • Proteomics approaches for the analysis of enriched microbial subpopulations and visualization of complex functional information
    • doi: 10.1016/j.copbio.2012.10.009
    • Bernhardt, J., Michalik, S., Wollscheid, B., Völker, U., and Schmidt, F. (2013). Proteomics approaches for the analysis of enriched microbial subpopulations and visualization of complex functional information. Curr. Opin. Biotechnol. 24, 112-119. doi: 10.1016/j.copbio.2012.10.009
    • (2013) Curr. Opin. Biotechnol. , vol.24 , pp. 112-119
    • Bernhardt, J.1    Michalik, S.2    Wollscheid, B.3    Völker, U.4    Schmidt, F.5
  • 4
    • 84905657544 scopus 로고    scopus 로고
    • MSstats: Protein Significance Analysis in LC-MS, SRM and DIA for Label-free or Label-based Proteomics Experiments.
    • R package version 2.0.1.
    • Choi, M., Chang, C. Y., and Vitek, O. (2013). MSstats: Protein Significance Analysis in LC-MS, SRM and DIA for Label-free or Label-based Proteomics Experiments. R package version 2.0.1.
    • (2013)
    • Choi, M.1    Chang, C.Y.2    Vitek, O.3
  • 5
    • 0036259806 scopus 로고    scopus 로고
    • Expression of the biofilm-associated protein interferes with host protein receptors of Staphylococcus aureus and alters the infective process
    • doi: 10.1128/IAI.70.6.3180-3186.2002
    • Cucarella, C., Tormo, M. A., Knecht, E., Amorena, B., Lasa, I., Foster, T. J., et al. (2002). Expression of the biofilm-associated protein interferes with host protein receptors of Staphylococcus aureus and alters the infective process. Infect. Immun. 70, 3180-3186. doi: 10.1128/IAI.70.6.3180-3186.2002
    • (2002) Infect. Immun. , vol.70 , pp. 3180-3186
    • Cucarella, C.1    Tormo, M.A.2    Knecht, E.3    Amorena, B.4    Lasa, I.5    Foster, T.J.6
  • 6
    • 84899542544 scopus 로고    scopus 로고
    • Global gene expression of methicillin-resistant Staphylococcus aureus USA300 during human and mouse infection
    • doi: 10.1093/infdis/jit668
    • Date, S. V., Modrusan, Z., Lawrence, M., Morisaki, J. H., Toy, K., Shah, I. M., et al. (2014). Global gene expression of methicillin-resistant Staphylococcus aureus USA300 during human and mouse infection. J. Infect. Dis. 209, 1542-1550. doi: 10.1093/infdis/jit668
    • (2014) J. Infect. Dis. , vol.209 , pp. 1542-1550
    • Date, S.V.1    Modrusan, Z.2    Lawrence, M.3    Morisaki, J.H.4    Toy, K.5    Shah, I.M.6
  • 7
    • 81255127326 scopus 로고    scopus 로고
    • The alternative sigma factor B modulates virulence gene expression in a murine Staphylococcus aureus infection model but does not influence kidney gene expression pattern of the host
    • doi: 10.1016/j.ijmm.2011.09.013
    • Depke, M., Burian, M., Schäfer, T., Bröker, B. M., Ohlsen, K., and Völker, U. (2012). The alternative sigma factor B modulates virulence gene expression in a murine Staphylococcus aureus infection model but does not influence kidney gene expression pattern of the host. Int. J. Med. Microbiol. 302, 33-39. doi: 10.1016/j.ijmm.2011.09.013
    • (2012) Int. J. Med. Microbiol. , vol.302 , pp. 33-39
    • Depke, M.1    Burian, M.2    Schäfer, T.3    Bröker, B.M.4    Ohlsen, K.5    Völker, U.6
  • 8
    • 84892670670 scopus 로고    scopus 로고
    • Labeling of the pathogenic bacterium Staphylococcus aureus with gold or ferric oxide-core nanoparticles highlights new capabilities for investigation of host-pathogen interactions
    • doi: 10.1002/cyto.a.22425
    • Depke, M., Surmann, K., Hildebrandt, P., Jehmlich, N., Michalik, S., Stanca, S. E., et al. (2014). Labeling of the pathogenic bacterium Staphylococcus aureus with gold or ferric oxide-core nanoparticles highlights new capabilities for investigation of host-pathogen interactions. Cytometry A 85, 140-150. doi: 10.1002/cyto.a.22425
    • (2014) Cytometry A , vol.85 , pp. 140-150
    • Depke, M.1    Surmann, K.2    Hildebrandt, P.3    Jehmlich, N.4    Michalik, S.5    Stanca, S.E.6
  • 9
    • 84891758227 scopus 로고    scopus 로고
    • Metabolic footprint analysis uncovers strain specific overflow metabolism and D-isoleucine production of Staphylococcus aureus COL and HG001
    • doi: 10.1371/journal.pone.0081500
    • Dörries, K., and Lalk, M. (2013). Metabolic footprint analysis uncovers strain specific overflow metabolism and D-isoleucine production of Staphylococcus aureus COL and HG001. PLoS ONE 8:e81500. doi: 10.1371/journal.pone.0081500
    • (2013) PLoS ONE , vol.8
    • Dörries, K.1    Lalk, M.2
  • 10
    • 84891442618 scopus 로고    scopus 로고
    • Metabolic host responses to infection by intracellular bacterial pathogens
    • doi: 10.3389/fcimb.2013.00024
    • Eisenreich, W., Heesemann, J., Rudel, T., and Goebel, W. (2013). Metabolic host responses to infection by intracellular bacterial pathogens. Front. Cell. Infect. Microbiol. 3:24. doi: 10.3389/fcimb.2013.00024
    • (2013) Front. Cell. Infect. Microbiol. , vol.3 , pp. 24
    • Eisenreich, W.1    Heesemann, J.2    Rudel, T.3    Goebel, W.4
  • 11
    • 84872371907 scopus 로고    scopus 로고
    • Comet: an open-source MS/MS sequence database search tool
    • doi: 10.1002/pmic.201200439
    • Eng, J. K., Jahan, T. A., and Hoopmann, M. R. (2013). Comet: an open-source MS/MS sequence database search tool. Proteomics 13, 22-24. doi: 10.1002/pmic.201200439
    • (2013) Proteomics , vol.13 , pp. 22-24
    • Eng, J.K.1    Jahan, T.A.2    Hoopmann, M.R.3
  • 12
    • 0027412209 scopus 로고
    • Expression of the cystic fibrosis transmembrane conductance regulator from a novel adeno-associated virus promoter
    • Flotte, T. R., Afione, S. A., Solow, R., Drumm, M. L., Markakis, D., Guggino, W. B., et al. (1993). Expression of the cystic fibrosis transmembrane conductance regulator from a novel adeno-associated virus promoter. J. Biol. Chem. 268, 3781-3790.
    • (1993) J. Biol. Chem. , vol.268 , pp. 3781-3790
    • Flotte, T.R.1    Afione, S.A.2    Solow, R.3    Drumm, M.L.4    Markakis, D.5    Guggino, W.B.6
  • 13
    • 34447567495 scopus 로고    scopus 로고
    • A global view of Staphylococcus aureus whole genome expression upon internalization in human epithelial cells
    • doi: 10.1186/1471-2164-8-171
    • Garzoni, C., Francois, P., Huyghe, A., Couzinet, S., Tapparel, C., Charbonnier, Y., et al. (2007). A global view of Staphylococcus aureus whole genome expression upon internalization in human epithelial cells. BMC Genomics 8:171. doi: 10.1186/1471-2164-8-171
    • (2007) BMC Genomics , vol.8 , pp. 171
    • Garzoni, C.1    Francois, P.2    Huyghe, A.3    Couzinet, S.4    Tapparel, C.5    Charbonnier, Y.6
  • 14
    • 60349085142 scopus 로고    scopus 로고
    • Staphylococcus aureus: new evidence for intracellular persistence
    • doi: 10.1016/j.tim.2008.11.005
    • Garzoni, C., and Kelley, W. L. (2009). Staphylococcus aureus: new evidence for intracellular persistence. Trends Microbiol. 17, 59-65. doi: 10.1016/j.tim.2008.11.005
    • (2009) Trends Microbiol. , vol.17 , pp. 59-65
    • Garzoni, C.1    Kelley, W.L.2
  • 15
    • 84899644348 scopus 로고    scopus 로고
    • Staphylococcus aureus alpha-toxin mediates general and cell type-specific changes in metabolite concentrations of immortalized human airway epithelial cells
    • doi: 10.1371/journal.pone.0094818
    • Gierok, P., Harms, M., Richter, E., Hildebrandt, J. P., Lalk, M., Mostertz, J., et al. (2014). Staphylococcus aureus alpha-toxin mediates general and cell type-specific changes in metabolite concentrations of immortalized human airway epithelial cells. PLoS ONE 9:e94818. doi: 10.1371/journal.pone.0094818
    • (2014) PLoS ONE , vol.9
    • Gierok, P.1    Harms, M.2    Richter, E.3    Hildebrandt, J.P.4    Lalk, M.5    Mostertz, J.6
  • 16
    • 84891604619 scopus 로고    scopus 로고
    • Both terminal oxidases contribute to fitness and virulence during organ-specific Staphylococcus aureus colonization.
    • e00976-e00913, doi: 10.1128/mBio.00976-13.
    • Götz, F., and Mayer, S. (2013). Both terminal oxidases contribute to fitness and virulence during organ-specific Staphylococcus aureus colonization. MBio 4,e00976-e00913. doi: 10.1128/mBio.00976-13
    • (2013) MBio , vol.4
    • Götz, F.1    Mayer, S.2
  • 17
    • 0017710978 scopus 로고
    • Characteristics of a human cell line transformed by DNA from human adenovirus type 5
    • doi: 10.1099/0022-1317-36-1-59
    • Graham, F. L., Smiley, J., Russell, W. C., and Nairn, R. (1977). Characteristics of a human cell line transformed by DNA from human adenovirus type 5. J. Gen. Virol. 36, 59-74. doi: 10.1099/0022-1317-36-1-59
    • (1977) J. Gen. Virol. , vol.36 , pp. 59-74
    • Graham, F.L.1    Smiley, J.2    Russell, W.C.3    Nairn, R.4
  • 18
    • 33748427901 scopus 로고    scopus 로고
    • Staphylococcus aureus induces caspase-independent cell death in human peritoneal mesothelial cells
    • doi: 10.1038/sj.ki.5001710
    • Haslinger-Löffler, B., Wagner, B., Brück, M., Strangfeld, K., Grundmeier, M., Fischer, U., et al. (2006). Staphylococcus aureus induces caspase-independent cell death in human peritoneal mesothelial cells. Kidney Int. 70, 1089-1098. doi: 10.1038/sj.ki.5001710
    • (2006) Kidney Int. , vol.70 , pp. 1089-1098
    • Haslinger-Löffler, B.1    Wagner, B.2    Brück, M.3    Strangfeld, K.4    Grundmeier, M.5    Fischer, U.6
  • 19
    • 84876560030 scopus 로고    scopus 로고
    • MetaboLights-an open-access general-purpose repository for metabolomics studies and associated meta-data
    • doi: 10.1093/nar/gks1004
    • Haug, K., Salek, R. M., Conesa, P., Hastings, J., de Matos, P., Rijnbeek, M., et al. (2013). MetaboLights-an open-access general-purpose repository for metabolomics studies and associated meta-data. Nucleic Acids Res. 41, D781-D786. doi: 10.1093/nar/gks1004
    • (2013) Nucleic Acids Res. , vol.41
    • Haug, K.1    Salek, R.M.2    Conesa, P.3    Hastings, J.4    de Matos, P.5    Rijnbeek, M.6
  • 20
    • 77952700194 scopus 로고    scopus 로고
    • Repair of global regulators in Staphylococcus aureus 8325 and comparative analysis with other clinical isolates
    • doi: 10.1128/IAI.00088-10
    • Herbert, S., Ziebandt, A. K., Ohlsen, K., Schafer, T., Hecker, M., Albrecht, D., et al. (2010). Repair of global regulators in Staphylococcus aureus 8325 and comparative analysis with other clinical isolates. Infect. Immun. 78, 2877-2889. doi: 10.1128/IAI.00088-10
    • (2010) Infect. Immun. , vol.78 , pp. 2877-2889
    • Herbert, S.1    Ziebandt, A.K.2    Ohlsen, K.3    Schafer, T.4    Hecker, M.5    Albrecht, D.6
  • 21
    • 84905648199 scopus 로고    scopus 로고
    • Staphylococcus aureus-hemolysin a disrupts cell-matrix adhesions in human airway epithelial cells.
    • doi: 10.1165/rcmb.2014-0082OC. [Epub ahead of print].
    • Hermann, I., Räth, S., Ziesemer, S., Volksdorf, T., Dress, R. J., Gutjahr, M., et al. (2014). Staphylococcus aureus-hemolysin a disrupts cell-matrix adhesions in human airway epithelial cells. Am. J. Respir. Cell Mol. Biol. doi: 10.1165/rcmb.2014-0082OC. [Epub ahead of print].
    • (2014) Am. J. Respir. Cell Mol. Biol.
    • Hermann, I.1    Räth, S.2    Ziesemer, S.3    Volksdorf, T.4    Dress, R.J.5    Gutjahr, M.6
  • 22
    • 0029556249 scopus 로고
    • Internalization of Staphylococcus aureus by cultured osteoblasts
    • doi: 10.1006/mpat.1995.0075
    • Hudson, M. C., Ramp, W. K., Nicholson, N. C., Williams, A. S., and Nousiainen, M. T. (1995). Internalization of Staphylococcus aureus by cultured osteoblasts. Microb. Pathog. 19, 409-419. doi: 10.1006/mpat.1995.0075
    • (1995) Microb. Pathog. , vol.19 , pp. 409-419
    • Hudson, M.C.1    Ramp, W.K.2    Nicholson, N.C.3    Williams, A.S.4    Nousiainen, M.T.5
  • 23
    • 78649937122 scopus 로고    scopus 로고
    • The morphometrical analysis on the ultrastructure of A549 cells
    • Jiang, R. D., Shen, H., and Piao, Y. J. (2010). The morphometrical analysis on the ultrastructure of A549 cells. Rom. J. Morphol. Embryol. 51, 663-667.
    • (2010) Rom. J. Morphol. Embryol. , vol.51 , pp. 663-667
    • Jiang, R.D.1    Shen, H.2    Piao, Y.J.3
  • 24
    • 4644258164 scopus 로고    scopus 로고
    • Sigma factor B and RsbU are required for virulence in Staphylococcus aureus-induced arthritis and sepsis
    • doi: 10.1128/IAI.72.10.6106-6111.2004
    • Jonsson, I. M., Arvidson, S., Foster, S., and Tarkowski, A. (2004). Sigma factor B and RsbU are required for virulence in Staphylococcus aureus-induced arthritis and sepsis. Infect. Immun. 72, 6106-6111. doi: 10.1128/IAI.72.10.6106-6111.2004
    • (2004) Infect. Immun. , vol.72 , pp. 6106-6111
    • Jonsson, I.M.1    Arvidson, S.2    Foster, S.3    Tarkowski, A.4
  • 25
    • 84893720330 scopus 로고    scopus 로고
    • Small colony variants (SCVs) of Staphylococcus aureus-a bacterial survival strategy
    • doi: 10.1016/j.meegid.2013.05.016
    • Kahl, B. C. (2014). Small colony variants (SCVs) of Staphylococcus aureus-a bacterial survival strategy. Infect. Genet. Evol. 21, 515-522. doi: 10.1016/j.meegid.2013.05.016
    • (2014) Infect. Genet. Evol. , vol.21 , pp. 515-522
    • Kahl, B.C.1
  • 26
    • 79952117670 scopus 로고    scopus 로고
    • Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline
    • doi: 10.1007/978-1-60761-977-2_12
    • Keller, A., and Shteynberg, D. (2011). Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline. Methods Mol. Biol. 694, 169-189. doi: 10.1007/978-1-60761-977-2_12
    • (2011) Methods Mol. Biol. , vol.694 , pp. 169-189
    • Keller, A.1    Shteynberg, D.2
  • 27
    • 0034526172 scopus 로고    scopus 로고
    • VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL
    • doi: 10.1093/bioinformatics/16.11.1048
    • Kersey, P., Hermjakob, H., and Apweiler, R. (2000). VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL. Bioinformatics 16, 1048-1049. doi: 10.1093/bioinformatics/16.11.1048
    • (2000) Bioinformatics , vol.16 , pp. 1048-1049
    • Kersey, P.1    Hermjakob, H.2    Apweiler, R.3
  • 28
    • 33947366516 scopus 로고    scopus 로고
    • Development and validation of a spectral library searching method for peptide identification from MS/MS
    • doi: 10.1002/pmic.200600625
    • Lam, H., Deutsch, E. W., Eddes, J. S., Eng, J. K., King, N., Stein, S. E., et al. (2007). Development and validation of a spectral library searching method for peptide identification from MS/MS. Proteomics 7, 655-667. doi: 10.1002/pmic.200600625
    • (2007) Proteomics , vol.7 , pp. 655-667
    • Lam, H.1    Deutsch, E.W.2    Eddes, J.S.3    Eng, J.K.4    King, N.5    Stein, S.E.6
  • 29
    • 62449093979 scopus 로고    scopus 로고
    • The H35A mutated alpha-toxin interferes with cytotoxicity of staphylococcal alpha-toxin
    • doi: 10.1128/IAI.00920-08
    • Liang, X., Yan, M., and Ji, Y. (2009). The H35A mutated alpha-toxin interferes with cytotoxicity of staphylococcal alpha-toxin. Infect. Immun. 77, 977-983. doi: 10.1128/IAI.00920-08
    • (2009) Infect. Immun. , vol.77 , pp. 977-983
    • Liang, X.1    Yan, M.2    Ji, Y.3
  • 30
    • 0017275417 scopus 로고
    • A continuous tumor-cell line from a human lung carcinoma with properties of type II alveolar epithelial cells
    • doi: 10.1002/ijc.2910170110
    • Lieber, M., Smith, B., Szakal, A., Nelson-Rees, W., and Todaro, G. (1976). A continuous tumor-cell line from a human lung carcinoma with properties of type II alveolar epithelial cells. Int. J. Cancer 17, 62-70. doi: 10.1002/ijc.2910170110
    • (1976) Int. J. Cancer , vol.17 , pp. 62-70
    • Lieber, M.1    Smith, B.2    Szakal, A.3    Nelson-Rees, W.4    Todaro, G.5
  • 31
    • 0032551901 scopus 로고    scopus 로고
    • Staphylococcus aureus infections
    • doi: 10.1056/NEJM199808203390806
    • Lowy, F. D. (1998). Staphylococcus aureus infections. N. Engl. J. Med. 339, 520-532. doi: 10.1056/NEJM199808203390806
    • (1998) N. Engl. J. Med. , vol.339 , pp. 520-532
    • Lowy, F.D.1
  • 32
    • 84865545434 scopus 로고    scopus 로고
    • Efficacy of tetracycline encapsulated O-carboxymethyl chitosan nanoparticles against intracellular infections of Staphylococcus aureus
    • doi: 10.1016/j.ijbiomac.2012.06.009
    • Maya, S., Indulekha, S., Sukhithasri, V., Smitha, K. T., Nair, S. V., Jayakumar, R., et al. (2012). Efficacy of tetracycline encapsulated O-carboxymethyl chitosan nanoparticles against intracellular infections of Staphylococcus aureus. Int. J. Biol. Macromol. 51, 392-399. doi: 10.1016/j.ijbiomac.2012.06.009
    • (2012) Int. J. Biol. Macromol. , vol.51 , pp. 392-399
    • Maya, S.1    Indulekha, S.2    Sukhithasri, V.3    Smitha, K.T.4    Nair, S.V.5    Jayakumar, R.6
  • 33
    • 80052508991 scopus 로고    scopus 로고
    • Mapping of interactions between human macrophages and Staphylococcus aureus reveals an involvement of MAP kinase signaling in the host defense
    • doi: 10.1021/pr200224x
    • Miller, M., Dreisbach, A., Otto, A., Becher, D., Bernhardt, J., Hecker, M., et al. (2011). Mapping of interactions between human macrophages and Staphylococcus aureus reveals an involvement of MAP kinase signaling in the host defense. J. Proteome Res. 10, 4018-4032. doi: 10.1021/pr200224x
    • (2011) J. Proteome Res. , vol.10 , pp. 4018-4032
    • Miller, M.1    Dreisbach, A.2    Otto, A.3    Becher, D.4    Bernhardt, J.5    Hecker, M.6
  • 34
    • 0037725380 scopus 로고    scopus 로고
    • Construction of the mobilizable plasmid pMV158GFP, a derivative of pMV158 that carries the gene encoding the green fluorescent protein
    • doi: 10.1016/S0147-619X(03)00020-9
    • Nieto, C., and Espinosa, M. (2003). Construction of the mobilizable plasmid pMV158GFP, a derivative of pMV158 that carries the gene encoding the green fluorescent protein. Plasmid 49, 281-285. doi: 10.1016/S0147-619X(03)00020-9
    • (2003) Plasmid , vol.49 , pp. 281-285
    • Nieto, C.1    Espinosa, M.2
  • 35
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • doi: 10.1074/mcp.M200025-MCP200
    • Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., et al. (2002). Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386. doi: 10.1074/mcp.M200025-MCP200
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6
  • 36
    • 25644458211 scopus 로고    scopus 로고
    • The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
    • doi: 10.1093/nar/gki866
    • Overbeek, R., Begley, T., Butler, R. M., Choudhuri, J. V., Chuang, H. Y., Cohoon, M., et al. (2005). The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 33, 5691-5702. doi: 10.1093/nar/gki866
    • (2005) Nucleic Acids Res. , vol.33 , pp. 5691-5702
    • Overbeek, R.1    Begley, T.2    Butler, R.M.3    Choudhuri, J.V.4    Chuang, H.Y.5    Cohoon, M.6
  • 37
    • 84893754891 scopus 로고    scopus 로고
    • Activation of the alternative sigma factor SigB of Staphylococcus aureus following internalization by epithelial cells-an in vivo proteomics perspective
    • doi: 10.1016/j.ijmm.2013.11.014
    • Pförtner, H., Burian, M. S., Michalik, S., Depke, M., Hildebrandt, P., Dhople, V. M., et al. (2014). Activation of the alternative sigma factor SigB of Staphylococcus aureus following internalization by epithelial cells-an in vivo proteomics perspective. Int. J. Med. Microbiol. 304, 177-187. doi: 10.1016/j.ijmm.2013.11.014
    • (2014) Int. J. Med. Microbiol. , vol.304 , pp. 177-187
    • Pförtner, H.1    Burian, M.S.2    Michalik, S.3    Depke, M.4    Hildebrandt, P.5    Dhople, V.M.6
  • 38
    • 84879589516 scopus 로고    scopus 로고
    • A proteomics workflow for quantitative and time-resolved analysis of adaptation reactions of internalized bacteria
    • doi: 10.1016/j.ymeth.2013.04.009
    • Pförtner, H., Wagner, J., Surmann, K., Hildebrandt, P., Ernst, S., Bernhardt, J., et al. (2013). A proteomics workflow for quantitative and time-resolved analysis of adaptation reactions of internalized bacteria. Methods 61, 244-250. doi: 10.1016/j.ymeth.2013.04.009
    • (2013) Methods , vol.61 , pp. 244-250
    • Pförtner, H.1    Wagner, J.2    Surmann, K.3    Hildebrandt, P.4    Ernst, S.5    Bernhardt, J.6
  • 39
    • 84861178173 scopus 로고    scopus 로고
    • Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation
    • doi: 10.1074/mcp.M112.017707
    • Schilling, B., Rardin, M. J., Maclean, B. X., Zawadzka, A. M., Frewen, B. E., Cusack, M. P., et al. (2012). Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation. Mol. Cell. Proteomics 11, 202-214. doi: 10.1074/mcp.M112.017707
    • (2012) Mol. Cell. Proteomics , vol.11 , pp. 202-214
    • Schilling, B.1    Rardin, M.J.2    Maclean, B.X.3    Zawadzka, A.M.4    Frewen, B.E.5    Cusack, M.P.6
  • 40
    • 1842499791 scopus 로고    scopus 로고
    • Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry
    • doi: 10.1074/mcp.M300087-MCP200
    • Schirle, M., Heurtier, M. A., and Kuster, B. (2003). Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry. Mol. Cell. Proteomics 2, 1297-1305. doi: 10.1074/mcp.M300087-MCP200
    • (2003) Mol. Cell. Proteomics , vol.2 , pp. 1297-1305
    • Schirle, M.1    Heurtier, M.A.2    Kuster, B.3
  • 41
    • 77955119702 scopus 로고    scopus 로고
    • Time-resolved quantitative proteome profiling of host-pathogen interactions: the response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells
    • doi: 10.1002/pmic.201000045
    • Schmidt, F., Scharf, S. S., Hildebrandt, P., Burian, M., Bernhardt, J., Dhople, V., et al. (2010). Time-resolved quantitative proteome profiling of host-pathogen interactions: the response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells. Proteomics 10, 2801-2811. doi: 10.1002/pmic.201000045
    • (2010) Proteomics , vol.10 , pp. 2801-2811
    • Schmidt, F.1    Scharf, S.S.2    Hildebrandt, P.3    Burian, M.4    Bernhardt, J.5    Dhople, V.6
  • 42
    • 80053387432 scopus 로고    scopus 로고
    • iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates
    • doi: 10.1074/mcp.M111.007690
    • Shteynberg, D., Deutsch, E. W., Lam, H., Eng, J. K., Sun, Z., Tasman, N., et al. (2011). iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates. Mol. Cell. Proteomics 10, M111.007690. doi: 10.1074/mcp.M111.007690
    • (2011) Mol. Cell. Proteomics , vol.10
    • Shteynberg, D.1    Deutsch, E.W.2    Lam, H.3    Eng, J.K.4    Sun, Z.5    Tasman, N.6
  • 43
    • 9444241592 scopus 로고    scopus 로고
    • Fibronectin-binding protein acts as Staphylococcus aureus invasin via fibronectin bridging to integrin alpha5beta1
    • doi: 10.1046/j.1462-5822.1999.00011.x
    • Sinha, B., François, P. P., Nüsse, O., Foti, M., Hartford, O. M., Vaudaux, P., et al. (1999). Fibronectin-binding protein acts as Staphylococcus aureus invasin via fibronectin bridging to integrin alpha5beta1. Cell. Microbiol. 1, 101-117. doi: 10.1046/j.1462-5822.1999.00011.x
    • (1999) Cell. Microbiol. , vol.1 , pp. 101-117
    • Sinha, B.1    François, P.P.2    Nüsse, O.3    Foti, M.4    Hartford, O.M.5    Vaudaux, P.6
  • 44
    • 5044224344 scopus 로고    scopus 로고
    • Comprehensive analysis of metabolites in Corynebacterium glutamicum by gas chromatography/mass spectrometry
    • doi: 10.1515/BC.2004.111
    • Strelkov, S., Von Elstermann, M., and Schomburg, D. (2004). Comprehensive analysis of metabolites in Corynebacterium glutamicum by gas chromatography/mass spectrometry. Biol. Chem. 385, 853-861. doi: 10.1515/BC.2004.111
    • (2004) Biol. Chem. , vol.385 , pp. 853-861
    • Strelkov, S.1    Von Elstermann, M.2    Schomburg, D.3
  • 45
    • 79952079593 scopus 로고    scopus 로고
    • Staphylococcus aureus phenotype switching: an effective bacterial strategy to escape host immune response and establish a chronic infection
    • doi: 10.1002/emmm.201000115
    • Tuchscherr, L., Medina, E., Hussain, M., Völker, W., Heitmann, V., Niemann, S., et al. (2011). Staphylococcus aureus phenotype switching: an effective bacterial strategy to escape host immune response and establish a chronic infection. EMBO Mol. Med. 3, 129-141. doi: 10.1002/emmm.201000115
    • (2011) EMBO Mol. Med. , vol.3 , pp. 129-141
    • Tuchscherr, L.1    Medina, E.2    Hussain, M.3    Völker, W.4    Heitmann, V.5    Niemann, S.6
  • 46
    • 84891796097 scopus 로고    scopus 로고
    • ProteomeXchange provides globally coordinated proteomics data submission and dissemination
    • doi: 10.1038/nbt.2839
    • Vizcaino, J. A., Deutsch, E. W., Wang, R., Csordas, A., Reisinger, F., Rios, D., et al. (2014). ProteomeXchange provides globally coordinated proteomics data submission and dissemination. Nat. Biotechnol. 32, 223-226. doi: 10.1038/nbt.2839
    • (2014) Nat. Biotechnol. , vol.32 , pp. 223-226
    • Vizcaino, J.A.1    Deutsch, E.W.2    Wang, R.3    Csordas, A.4    Reisinger, F.5    Rios, D.6
  • 47
    • 84888006452 scopus 로고    scopus 로고
    • Involvement of phosphatidylinositol 3-Kinase/Akt signaling pathway in ß 1 integrin-mediated internalization of Staphylococcus aureus by alveolar epithelial cells
    • doi: 10.1007/s12275-013-3040-x
    • Wang, J. H., Zhang, K., Wang, N., Qiu, X. M., Wang, Y. B., and He, P. (2013). Involvement of phosphatidylinositol 3-Kinase/Akt signaling pathway in ß 1 integrin-mediated internalization of Staphylococcus aureus by alveolar epithelial cells. J. Microbiol. 51, 644-650. doi: 10.1007/s12275-013-3040-x
    • (2013) J. Microbiol. , vol.51 , pp. 644-650
    • Wang, J.H.1    Zhang, K.2    Wang, N.3    Qiu, X.M.4    Wang, Y.B.5    He, P.6
  • 49
    • 0026148375 scopus 로고
    • A cystic fibrosis bronchial epithelial cell line: immortalization by adeno-12-SV40 infection
    • doi: 10.1165/ajrcmb/4.4.313
    • Zeitlin, P. L., Lu, L., Rhim, J., Cutting, G., Stetten, G., Kieffer, K. A., et al. (1991). A cystic fibrosis bronchial epithelial cell line: immortalization by adeno-12-SV40 infection. Am. J. Respir. Cell Mol. Biol. 4, 313-319. doi: 10.1165/ajrcmb/4.4.313
    • (1991) Am. J. Respir. Cell Mol. Biol. , vol.4 , pp. 313-319
    • Zeitlin, P.L.1    Lu, L.2    Rhim, J.3    Cutting, G.4    Stetten, G.5    Kieffer, K.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.