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Volumn 24, Issue 1, 2013, Pages 112-119

Proteomics approaches for the analysis of enriched microbial subpopulations and visualization of complex functional information

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE RESPONSE; DATA RESOURCES; ENVIRONMENTAL STIMULI; FUNCTIONAL CHARACTERISTICS; FUNCTIONAL COMPLEXITY; FUNCTIONAL INFORMATION; HOST CELLS; MICROBIAL CELLS; MOLECULAR CHARACTERIZATION; MULTI-SPECIES; NETWORK GRAPH; PROTEOMES; PROTEOMICS; PROTEOMICS TECHNOLOGY; QUANTITATIVE CHARACTERIZATION; TREE-MAPS; VISUALIZATION METHOD; VORONOI;

EID: 84872268114     PISSN: 09581669     EISSN: 18790429     Source Type: Journal    
DOI: 10.1016/j.copbio.2012.10.009     Document Type: Review
Times cited : (22)

References (52)
  • 3
    • 84864069424 scopus 로고    scopus 로고
    • Global relative and absolute quantitation in microbial proteomics
    • Otto A., Bernhardt J., Hecker M., Becher D. Global relative and absolute quantitation in microbial proteomics. Curr Opin Microbiol 2012, 15:364-372.
    • (2012) Curr Opin Microbiol , vol.15 , pp. 364-372
    • Otto, A.1    Bernhardt, J.2    Hecker, M.3    Becher, D.4
  • 6
    • 77953254182 scopus 로고    scopus 로고
    • Functional single-cell analyses: flow cytometry and cell sorting of microbial populations and communities
    • Muller S., Nebe-von-Caron G. Functional single-cell analyses: flow cytometry and cell sorting of microbial populations and communities. FEMS Microbiol Rev 2010, 34:554-587.
    • (2010) FEMS Microbiol Rev , vol.34 , pp. 554-587
    • Muller, S.1    Nebe-von-Caron, G.2
  • 7
    • 33845230421 scopus 로고    scopus 로고
    • A cytomic approach reveals population heterogeneity of Cupriavidus necator in response to harmful phenol concentrations
    • Wiacek C., Muller S., Benndorf D. A cytomic approach reveals population heterogeneity of Cupriavidus necator in response to harmful phenol concentrations. Proteomics 2006, 6:5983-5994.
    • (2006) Proteomics , vol.6 , pp. 5983-5994
    • Wiacek, C.1    Muller, S.2    Benndorf, D.3
  • 12
    • 77955119702 scopus 로고    scopus 로고
    • Time-resolved quantitative proteome profiling of host-pathogen interactions: the response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells
    • Schmidt F., Scharf S.S., Hildebrandt P., Burian M., Bernhardt J., Dhople V., Kalinka J., Gutjahr M., Hammer E., Volker U. Time-resolved quantitative proteome profiling of host-pathogen interactions: the response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells. Proteomics 2010, 10:2801-2811.
    • (2010) Proteomics , vol.10 , pp. 2801-2811
    • Schmidt, F.1    Scharf, S.S.2    Hildebrandt, P.3    Burian, M.4    Bernhardt, J.5    Dhople, V.6    Kalinka, J.7    Gutjahr, M.8    Hammer, E.9    Volker, U.10
  • 14
    • 77957835477 scopus 로고    scopus 로고
    • Protovis: a graphical toolkit for visualization
    • Bostock M., Heer J. Protovis: a graphical toolkit for visualization. IEEE Trans Vis Comput Graph 2009, 15:1121-1128.
    • (2009) IEEE Trans Vis Comput Graph , vol.15 , pp. 1121-1128
    • Bostock, M.1    Heer, J.2
  • 16
    • 84872268579 scopus 로고    scopus 로고
    • R-Core-Team R: R: A Language and Environment for Statistical Computing. Edited by. Vienna, Austria; 2012.
    • R-Core-Team R: R: A Language and Environment for Statistical Computing. Edited by. Vienna, Austria; 2012.
  • 17
    • 77955130275 scopus 로고    scopus 로고
    • Points of view: color coding
    • Wong B. Points of view: color coding. Nat Methods 2010, 7:573.
    • (2010) Nat Methods , vol.7 , pp. 573
    • Wong, B.1
  • 20
    • 79952202448 scopus 로고    scopus 로고
    • Cytoscape: software for visualization and analysis of biological networks
    • Kohl M., Wiese S., Warscheid B. Cytoscape: software for visualization and analysis of biological networks. Methods Mol Biol 2011, 696:291-303.
    • (2011) Methods Mol Biol , vol.696 , pp. 291-303
    • Kohl, M.1    Wiese, S.2    Warscheid, B.3
  • 21
    • 39949084468 scopus 로고    scopus 로고
    • IPath: interactive exploration of biochemical pathways and networks
    • Letunic I., Yamada T., Kanehisa M., Bork P. iPath: interactive exploration of biochemical pathways and networks. Trends Biochem Sci 2008, 33:101-103.
    • (2008) Trends Biochem Sci , vol.33 , pp. 101-103
    • Letunic, I.1    Yamada, T.2    Kanehisa, M.3    Bork, P.4
  • 22
    • 60749102222 scopus 로고    scopus 로고
    • Using the KEGG database resource
    • Unit 1 12 (Chapter 1)
    • Aoki K.F., Kanehisa M. Using the KEGG database resource. Curr Protoc Bioinform 2005, Unit 1 12 (Chapter 1).
    • (2005) Curr Protoc Bioinform
    • Aoki, K.F.1    Kanehisa, M.2
  • 28
    • 61049321601 scopus 로고    scopus 로고
    • Princeton Architectural Press, New York, 95 p.
    • Leborg C. Visual Grammar (Design Briefs) 2006, Princeton Architectural Press, New York, 95 p. edn 1.
    • (2006) Visual Grammar (Design Briefs)
    • Leborg, C.1
  • 29
    • 0003854151 scopus 로고
    • Exploratory data analysis
    • Addison-Wesley Pub. Co., Reading, MA, xvi, 688 pp.
    • Tukey J.W. Exploratory data analysis. Addison-Wesley Series in Behavioral Science 1977, Addison-Wesley Pub. Co., Reading, MA, xvi, 688 pp.
    • (1977) Addison-Wesley Series in Behavioral Science
    • Tukey, J.W.1
  • 30
    • 0032376126 scopus 로고    scopus 로고
    • Violin plots: a box plot-density trace synergism
    • Jerry L., Hintze R.D.N Violin plots: a box plot-density trace synergism. Am Stat 1998, 52:181-184.
    • (1998) Am Stat , vol.52 , pp. 181-184
    • Jerry, L.1    Hintze, R.D.N.2
  • 32
    • 79952897581 scopus 로고    scopus 로고
    • Drawing and labeling high-quality metro maps by mixed-integer programming
    • Nollenburg M., Wolff A. Drawing and labeling high-quality metro maps by mixed-integer programming. IEEE Trans Vis Comput Graph 2011, 17:626-641.
    • (2011) IEEE Trans Vis Comput Graph , vol.17 , pp. 626-641
    • Nollenburg, M.1    Wolff, A.2
  • 35
    • 79960342167 scopus 로고    scopus 로고
    • Visualizing multi-omics data in metabolic networks with the software Omix: a case study
    • Droste P., Miebach S., Niedenfuhr S., Wiechert W., Noh K. Visualizing multi-omics data in metabolic networks with the software Omix: a case study. Biosystems 2011, 105:154-161.
    • (2011) Biosystems , vol.105 , pp. 154-161
    • Droste, P.1    Miebach, S.2    Niedenfuhr, S.3    Wiechert, W.4    Noh, K.5
  • 36
    • 71049126880 scopus 로고    scopus 로고
    • Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
    • Neuweger H., Persicke M., Albaum S.P., Bekel T., Dondrup M., Huser A.T., Winnebald J., Schneider J., Kalinowski J., Goesmann A. Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Syst Biol 2009, 3:82.
    • (2009) BMC Syst Biol , vol.3 , pp. 82
    • Neuweger, H.1    Persicke, M.2    Albaum, S.P.3    Bekel, T.4    Dondrup, M.5    Huser, A.T.6    Winnebald, J.7    Schneider, J.8    Kalinowski, J.9    Goesmann, A.10
  • 39
    • 84858731684 scopus 로고    scopus 로고
    • Arena3D: visualizing time-driven phenotypic differences in biological systems
    • Secrier M., Pavlopoulos G.A., Aerts J., Schneider R. Arena3D: visualizing time-driven phenotypic differences in biological systems. BMC Bioinform 2012, 13:45.
    • (2012) BMC Bioinform , vol.13 , pp. 45
    • Secrier, M.1    Pavlopoulos, G.A.2    Aerts, J.3    Schneider, R.4
  • 40
    • 84872273625 scopus 로고    scopus 로고
    • Available from: (accessed 24.08.12), yworks
    • yworks yED on World Wide Web 2012, Available from: http://www.yworks.com/de/products_yed_about.html (accessed 24.08.12).
    • (2012) yED on World Wide Web
  • 44
    • 33645815698 scopus 로고    scopus 로고
    • Pedigree-drawing with R and graphviz
    • Zhao J.H. Pedigree-drawing with R and graphviz. Bioinformatics 2006, 22:1013-1014.
    • (2006) Bioinformatics , vol.22 , pp. 1013-1014
    • Zhao, J.H.1
  • 47
  • 52
    • 0004235628 scopus 로고    scopus 로고
    • Copernicus Books, New York, x, 167 pp.
    • Goodsell D.S. The Machinery of Life 2009, Copernicus Books, New York, x, 167 pp. edn 2.
    • (2009) The Machinery of Life
    • Goodsell, D.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.