Indirect pushing based automated micromanipulation of biological cells using optical tweezers

International Journal of Robotics Research

Volumn 33, Issue 8, 2014, Pages 1098-1111

  Thakur, Atul ^a   Chowdhury, Sagar ^b   Švec, Petr ^b   Wang, Chenlu ^c   Losert, Wolfgang ^c   Gupta, Satyandra K ^b  

^a INDIAN INSTITUTE OF TECHNOLOGY PATNA   (India)

^b UNIVERSITY OF MARYLAND   (United States)

^c UNIVERSITY OF MARYLAND   (United States)

Author keywords

Automated planning; Indirect manipulation; Indirect pushing; Micromanipulation; Optical tweezers; Robotic manipulation

Indexed keywords

AUTOMATION; COMPUTER SIMULATION; CYTOLOGY; EXPERIMENTS; LASER BEAMS; MICROMANIPULATORS; OPTICAL TWEEZERS; ROBOT PROGRAMMING;

AUTOMATED PLANNING; INDIRECT MANIPULATION; INDIRECT PUSHING; MICRO MANIPULATION; ROBOTIC MANIPULATION;

CELLS;

EID: 84905220394     PISSN: 02783649     EISSN: 17413176     Source Type: Journal    
DOI: 10.1177/0278364914523690     Document Type: Article

References (70)

1. Aabo T, Perch-Nielsen IR, Dam JS, et al. (2010) Effect of longand short-term exposure to laser light at 1070 nm on growth of Saccharomyces cerevisiae. Journal of Biomedical Optics 15(4): 041505-7.
2. Akella S and Mason M (1992) Posing polygonal objects in the plane by pushing. In: Proceedings of IEEE International conference on robotics and automation (ICRA'92), Volume 5, Nice, France, 12-14 May 1992, pp. 2255-2262.
3. Ashkin A and Dziedzic JM (1987) Optical trapping and manipulation of viruses and bacteria. Science 235(4795): 1517-1520.
4. Ashkin A and Dziedzic JM (1989) Internal cell manipulation using infrared laser traps. Proceedings of the National Academy of Sciences 86(20): 7914-7918.
5. Ayano S, Wakamoto Y, Yamashita S, et al.(2006) Quantitative measurement of damage caused by 1064-nm wavelength optical trapping of Escherichia coli cells using on-chip single cell cultivation system. Biochemical and Biophysical Research Communications 350(3): 678-684.
6. Banerjee AG, Balijepalli A, Gupta SK, et al. (2009) Generating simplified trapping probability models from simulation of optical tweezers system. Journal of Computing and Information Science in Engineering 9(2): 021003.
7. Banerjee AG, Chowdhury S, Losert W, et al. (2011) Survey on indirect optical manipulation of cells, nucleic acids, and motor proteins. Journal of Biomedical Optics 16(5): 051302.
8. Banerjee AG, Chowdhury S, Losert W, et al. (2012) Real-time path planning for coordinated transport of multiple particles using optical tweezers. IEEE Transactions on Automation Science and Engineering 9(4): 669-678.
9. Banerjee AG and Gupta SK (2013) Research in automated planning and control for micromanipulation. IEEE Transactions on Automation Science and Engineering 10(3): 485-495.
10. Banerjee AG, Pomerance A, Losert W, et al. (2010) Developing a stochastic dynamic programming framework for optical tweezer-based automated particle transport operations. IEEE Transactions on Automation Science and Engineering 7(2): 218-227.
11. Behrens M, Shoudong H and Dissanayake G (2010) Models for pushing objects with a mobile robot using single point contact. In: Proceedings of IEEE/RSJ International conference on intelligent robots and systems (IROS'10), Taipei, Taiwan, 18-22 October 2010, pp. 2964-2969.
12. Bergeles C, Shamaei K, Abbott J, et al. (2010) Single-camera focus-based localization of intraocular devices. IEEE Transactions on Biomedical Engineering 57(8): 2064-2074.
13. Bista S, Chowdhury S, Gupta SK, et al. (2013) Using GPUs for realtime prediction of optical forces on microsphere ensembles. Journal of Computing and Information Science in Engineering 13(3): 031002.
14. Bose S, Singh R, Hollatz MH, et al. (2012) Microfluidic devices for label-free separation of cells through transient interaction with asymmetric receptor patterns. In: APS meeting abstracts, Volume 1, p. 50004.
15. Burns MM, Fournier JM and Golovchenko JA (1989) Optical binding. Physical Review Letters 63: 1233-1236.
16. Cappelleri DJ, Fu Z and Fatovic M (2012) Caging for 2D and 3D micromanipulation. Journal of Micro-Nano Mechatronics 7: 115-129.
17. Chapin SC, Germain V and Dufresne ER (2006) Automated trapping, assembly, and sorting with holographic optical tweezers. Optics Express 14(26): 13095-13100.
18. Chen H, Wang C and Lou Y (2013) Flocking multiple microparticles with automatically controlled optical tweezers: Solutions and experiments. IEEE Transactions on Biomedical Engineering 60(6): 1518-1527.
19. Chowdhury S, Svec P, Wang C, et al. (2011) Investigation of automated cell manipulation in optical tweezers-assisted microfluidic chamber using simulations. In: Proceedings of 5th International conference on micro- and nano systems (MNS), Washington DC, USA, 28-31 August 2011, pp. 51-62.
20. Chowdhury S, Svec P, Wang C, et al. (2012a) Gripper synthesis for indirect manipulation of cells using holographic optical tweezers. In: Proceedings of IEEE International conference on robotics and automation (ICRA'12), St Paul, MN, USA, 14-18 May 2012, pp. 2749-2754.
21. Chowdhury S, Svec P, Wang C, et al. (2013a) Automated cell transport in optical tweezers-assisted microfluidic chambers. IEEE Transactions on Automation Science and Engineering 10(4): 980-989
22. Chowdhury S, Thakur A, Wang C, et al. (2012b) Automated indirect transport of biological cells with optical tweezers using planar gripper formations. In: Proceedings of 8th IEEE International conference on automation science and engineering, Seoul, Korea, 20-24 August 2012, pp. 267-272.
23. Chowdhury S, Thakur A, Wang C, et al. (2013b) Automated manipulation of biological cells using gripper formations controlled by optical tweezers. IEEE Transactions on Automation Science and Engineering 99: 1-10.
24. Cosgun A, Hermans T, Emeli V, et al. (2011) Push planning for object placement on cluttered table surfaces. In: Proceedings of IEEE/RSJ International conference on intelligent robots and systems (IROS'11), San Francisco, CA, USA, 25-30 September 2011, pp. 4627-4632.
25. Duda RO and Hart PE (1972) Use of the Hough transformation to detect lines and curves in pictures. Communications of the ACM 15(1): 11-15.
26. Ergeneman O, Chatzipirpiridis G, Pokki J, et al. (2012) In vitro oxygen sensing using intraocular microrobots. IEEE Transactions on Biomedical Engineering 59(11): 3104-3109.
27. Frutiger DR, Vollmers K, Kratochvil BE, et al. (2009) Small, fast, and under control: Wireless resonant magnetic microagents. The International Journal of Robotics Research 29(5): 613-636.
28. Gossett D, Weaver W, Mach A, et al. (2010) Label-free cell separation and sorting in microfluidic systems. Analytical and Bioanalytical Chemistry 397: 3249-3267.
29. Graydon O (2011) Optical manipulation: Tweezer app for iPad. Nature Photonics 5(5): 255.
30. Hu S and Sun D (2011) Automatic transportation of biological cells with a robot-tweezer manipulation system. The International Journal of Robotics Research 30(14): 1681-1694.
31. Igarashi T, Kamiyama Y and Inami M (2010) A dipole field for object delivery by pushing on a flat surface. In: Proceedings of IEEE International conference on robotics and automation (ICRA'10), Anchorage, AK, USA, 3-8 May 2011, pp. 5114-5119.
32. Ingber DE (2006) Mechanical control of tissue morphogenesis during embryological development. The International Journal of Developmental Biology 50(2-3): 255-266.
33. Karásek V, Čižmár T, Brzobohatý O, et al. (2008) Long-range one-dimensional longitudinal optical binding. Physical Review Letters 101: 143601.
34. Konig K, Liang H, Berns MW, et al. (1995) Cell-damage by nearin microbeams. Nature 377(6544): 20-21.
35. Konig K, Svaasand L, Liu YG, et al. (1996) Determination of motility forces of human spermatozoa using an 800 nm optical trap. Cellular and Molecular Biology 42(4): 501-509.
36. Kopicki M, Wyatt J and Stolkin R (2009) Prediction learning in robotic pushing manipulation. In: Proceedings of International conference on advanced robotics (ICAR'09), Munich, Germany, 22-26 June 2009, pp. 1-6.
37. Koss B, Chowdhury S, Aabo T, et al. (2011) Indirect optical gripping with triplet traps. Journal of the Optical Society of America B 28(5): 982-985.
38. Landolsi F, Ghorbel F and Dick A (2012) Analysis of the occurrence of stick-slip in AFM-based nano-pushing. Nonlinear Dynamics 68: 177-186.
39. LaValle SM (2006) Planning Algorithms. Cambridge: Cambridge University Press. Available at: http://planning.cs.uiuc.edu/.
40. Leach J, Wulff K, Sinclair G, et al. (2006) Interactive approach to optical tweezers control. Applied Optics 45(5): 897-903.
41. Li Q and Payandeh S (2007) Manipulation of convex objects via two-agent point-contact push. The International Journal of Robotics Research 26(4): 377-403.
42. Liu Y, Sonek GJ, Berns MW, et al. (1996) Physiological monitoring of optically trapped cells: Assessing the effects of confinement by 1064-nm laser tweezers using microfluorometry. Biophysics Journal 71(4): 2158-2167.
43. Lynch K (1999) Locally controllable manipulation by stable pushing.IEEE Transactions on Robotics and Automation 15(2): 318-327.
44. Mason MT (1986) Mechanics and planning of manipulator pushing operations. The International Journal of Robotics Research 5(3): 53-71.
45. McNerney GP, Hubner W, Chen BK, et al. (2010) Manipulating CD4+ T cells by optical tweezers for the initiation of cell-cell transfer of HIV-1. Journal of Biophotonics 3(4): 216-223.
46. Neuman KC, Chadd EH, Liou GF, et al. (1999) Characterization of photodamage to Escherichia coli in optical traps. Biophysics Journal 77(5): 2856-2863.
47. Neuman KC and Nagy A (2008) Single-molecule force spectroscopy: Optical tweezers, magnetic tweezers and atomic force microscopy. Nature Methods 5(6): 491-505.
48. Pawashe C, Floyd S and Sitti M (2009) Modeling and experimental characterization of an untethered magnetic micro-robot. The International Journal of Robotics Research 28(8): 1077-1094.
49. Pereira GAS, Campos MFM and Kumar V (2004) Decentralized algorithms for multi-robot manipulation via caging. The International Journal of Robotics Research 23(7-8): 783-795.
50. Rasmussen MB, Oddershede LB and Siegumfeldt H (2008) Optical tweezers cause physiological damage to Escherichia coli and Listeria bacteria. Applied and Environmental Microbiology 74(8): 2441-2446.
51. Rezzoug N and Gorce P (1999) Dynamic control of pushing operations. Robotica 17(6): 613-620.
52. Sakaki K, Dechev N, Burke R, et al. (2009) Development of an autonomous biological cell manipulator with single-cell electroporation and visual servoing capabilities. IEEE Transactions on Biomedical Engineering 56(8): 2064-2074.
53. Schriebl K, Satianegara G, Hwang A, et al. (2012) Selective removal of undifferentiated human embryonic stem cells using magnetic activated cell sorting followed by a cytotoxic antibody. Tissue Engineering Part A 18(9-10): 899-909.
54. Shojaei-Baghini E, Zheng Y and Sun Y (2013) Automated micropipette aspiration of single cells. Annals of Biomedical Engineering 41(6): 1-9.
55. Sims NR and Anderson MF (2008) Isolation of mitochondria from rat brain using Percoll density gradient centrifugation. Nature Protocols 3(7): 1228-1239.
56. Singer W, Bernet S and Ritsch-Marte M (2001) 3D-force calibration of optical tweezers for mechanical stimulation of surfactant-releasing lung cells. Laser Physics 11(11): 1217-1223.
57. Steager EB, Selman Sakar M, Magee C, et al. (2013) Automated biomanipulation of single cells using magnetic microrobots. The International Journal of Robotics Research 32(3): 346-359.
58. Svoboda K and Block SM (1994) Biological applications of optical forces. Annual Review of Biophysics Biomolecular Structure 23: 247-285.
59. Tan Y, Sun D, Wang J, et al. (2010) Mechanical characterization of human red blood cells under different osmotic conditions by robotic manipulation with optical tweezers. IEEE Transactions on Biomedical Engineering 57(7): 1816-1825.
60. Tavalaee M, Deemeh M, Arbabian M, et al. (2012) Density gradient centrifugation before or after magnetic-activated cell sorting: Which technique is more useful for clinical sperm selection? Journal of Assisted Reproduction and Genetics 29: 31-38.
61. Thakur A, Chowdhury S, Svec P, et al. (2012) Automated indirect optical micromanipulation of biological cells using indirect pushing to minimize photo-damage. In: Proceedings of ASME 2012 International design engineering technical conference (IDETC) and computers and information in engineering conference (CIE), Chicago, IL, USA, 12-15 August 2012, pp. 221-229.
62. Vedula SRK, Leong MC, Lai TL, et al. (2012) Emerging modes of collective cell migration induced by geometrical constraints. Proceedings of the National Academy of Sciences 109(32): 12974-12979.
63. Wang C, Chowdhury S, Gupta SK, et al. (2013) Optical micromanipulation of active cells with minimal perturbations: Direct and indirect pushing. Journal of Biomedical Optics 18(4): 045001.
64. Weijer CJ (2009) Collective cell migration in development. Journal of Cell Science 122(18): 3215-3223.
65. Wu Y, Dong S and Wenhao H (2011) Force and motion analysis for automated cell transportation with optical tweezers. In: Proceedings of 9th world congress on intelligent control and automation (WCICA'11), 21-25 June 2011, pp. 839-843.
66. Wu Y, Sun D, Huang W and Xi N (2013) Dynamics analysis and motion planning for automated cell transportation with optical tweezers. IEEE/ASME Transactions on Mechatronics 18(2): 706-713.
67. Wu Y, Tan Y, Sun D and HuangW(2010) Force analysis and path planning of the trapped cell in robotic manipulation with optical tweezers. In: Proceedings of IEEE International conference on robotics and automation (ICRA'10), Anchorage, AK, USA, 3-8 May 2011, pp. 4119-4124.
68. Xie C, Chen D and Li Y (2005) Raman sorting and identification of single living micro-organisms with optical tweezers. Optics Letters 30(14): 1800-1802.
69. Yim S, Goyal K and Sitti M (2013) Magnetically actuated soft capsule with the multimodal drug release function. IEEE/ASME Transactions on Mechatronics 99: 1-5.
70. Zhang XP, Leung C, Lu Z, et al. (2012) Controlled aspiration and positioning of biological cells in a micropipette. IEEE Transactions on Biomedical Engineering 59(4): 1032-1040.