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Volumn 53, Issue 29, 2014, Pages 4847-4856

Evolutionarily distinct versions of the multidomain enzyme α-isopropylmalate synthase share discrete mechanisms of V-type allosteric regulation

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS;

EID: 84904976574     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi500702u     Document Type: Article
Times cited : (9)

References (32)
  • 1
    • 84960296241 scopus 로고    scopus 로고
    • Mechanisms of protein evolution and their application to protein engineering
    • xii-xiii
    • Glasner, M. E., Gerlt, J. A., and Babbitt, P. C. (2007) Mechanisms of protein evolution and their application to protein engineering Adv. Enzymol. Relat. Areas Mol. Biol. 75, 193-239, xii-xiii
    • (2007) Adv. Enzymol. Relat. Areas Mol. Biol. , vol.75 , pp. 193-239
    • Glasner, M.E.1    Gerlt, J.A.2    Babbitt, P.C.3
  • 2
    • 84855286291 scopus 로고    scopus 로고
    • Divergent evolution in enolase superfamily: Strategies for assigning functions
    • Gerlt, J. A., Babbitt, P. C., Jacobson, M. P., and Almo, S. C. (2012) Divergent evolution in enolase superfamily: Strategies for assigning functions J. Biol. Chem. 287, 29-34
    • (2012) J. Biol. Chem. , vol.287 , pp. 29-34
    • Gerlt, J.A.1    Babbitt, P.C.2    Jacobson, M.P.3    Almo, S.C.4
  • 3
    • 0034923923 scopus 로고    scopus 로고
    • Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies
    • Gerlt, J. A. and Babbitt, P. C. (2001) Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies Annu. Rev. Biochem. 70, 209-246
    • (2001) Annu. Rev. Biochem. , vol.70 , pp. 209-246
    • Gerlt, J.A.1    Babbitt, P.C.2
  • 4
    • 70549106287 scopus 로고    scopus 로고
    • Markers of fitness in a successful enzyme superfamily
    • Allen, K. N. and Dunaway-Mariano, D. (2009) Markers of fitness in a successful enzyme superfamily Curr. Opin. Struct. Biol. 19, 658-665
    • (2009) Curr. Opin. Struct. Biol. , vol.19 , pp. 658-665
    • Allen, K.N.1    Dunaway-Mariano, D.2
  • 6
    • 9744279773 scopus 로고    scopus 로고
    • Divergent evolution in the enolase superfamily: The interplay of mechanism and specificity
    • Gerlt, J. A., Babbitt, P. C., and Rayment, I. (2005) Divergent evolution in the enolase superfamily: The interplay of mechanism and specificity Arch. Biochem. Biophys. 433, 59-70
    • (2005) Arch. Biochem. Biophys. , vol.433 , pp. 59-70
    • Gerlt, J.A.1    Babbitt, P.C.2    Rayment, I.3
  • 9
    • 84900562719 scopus 로고    scopus 로고
    • Mechanistic and bioinformatic investigation of a conserved active site helix in α-isopropylmalate synthase form Mycobacterium tuberculosis, a member of the DRE-TIM metallolyase superfamily
    • Casey, A. K., Hicks, M. A., Johnson, J. L., Babbitt, P. C., and Frantom, P. A. (2014) Mechanistic and bioinformatic investigation of a conserved active site helix in α-isopropylmalate synthase form Mycobacterium tuberculosis, a member of the DRE-TIM metallolyase superfamily Biochemistry 53, 2915-2925
    • (2014) Biochemistry , vol.53 , pp. 2915-2925
    • Casey, A.K.1    Hicks, M.A.2    Johnson, J.L.3    Babbitt, P.C.4    Frantom, P.A.5
  • 10
    • 2942525314 scopus 로고    scopus 로고
    • Crystal structure of LeuA from Mycobacterium tuberculosis, a key enzyme in leucine biosynthesis
    • Koon, N., Squire, C. J., and Baker, E. N. (2004) Crystal structure of LeuA from Mycobacterium tuberculosis, a key enzyme in leucine biosynthesis Proc. Natl. Acad. Sci. U.S.A. 101, 8295-8300
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , pp. 8295-8300
    • Koon, N.1    Squire, C.J.2    Baker, E.N.3
  • 11
    • 67650312585 scopus 로고    scopus 로고
    • Molecular basis of the inhibitor selectivity and insights into the feedback inhibition mechanism of citramalate synthase from Leptospira interrogans
    • Zhang, P., Ma, J., Zhang, Z., Zha, M., Xu, H., Zhao, G., and Ding, J. (2009) Molecular basis of the inhibitor selectivity and insights into the feedback inhibition mechanism of citramalate synthase from Leptospira interrogans Biochem. J. 421, 133-143
    • (2009) Biochem. J. , vol.421 , pp. 133-143
    • Zhang, P.1    Ma, J.2    Zhang, Z.3    Zha, M.4    Xu, H.5    Zhao, G.6    Ding, J.7
  • 12
    • 77951238143 scopus 로고    scopus 로고
    • Structural basis for l -lysine feedback inhibition of homocitrate synthase
    • Bulfer, S. L., Scott, E. M., Pillus, L., and Trievel, R. C. (2010) Structural basis for l -lysine feedback inhibition of homocitrate synthase J. Biol. Chem. 285, 10446-10453
    • (2010) J. Biol. Chem. , vol.285 , pp. 10446-10453
    • Bulfer, S.L.1    Scott, E.M.2    Pillus, L.3    Trievel, R.C.4
  • 16
    • 84857829354 scopus 로고    scopus 로고
    • Structural and functional characterization of α-isopropylmalate synthase and citramalate synthase, members of the LeuA dimer superfamily
    • Frantom, P. A. (2012) Structural and functional characterization of α-isopropylmalate synthase and citramalate synthase, members of the LeuA dimer superfamily Arch. Biochem. Biophys. 519, 202-209
    • (2012) Arch. Biochem. Biophys. , vol.519 , pp. 202-209
    • Frantom, P.A.1
  • 17
    • 22244449030 scopus 로고    scopus 로고
    • Slow-onset feedback inhibition: Inhibition of Mycobacterium tuberculosis α-isopropylmalate synthase by l -leucine
    • de Carvalho, L. P., Argyrou, A., and Blanchard, J. S. (2005) Slow-onset feedback inhibition: Inhibition of Mycobacterium tuberculosis α-isopropylmalate synthase by l -leucine J. Am. Chem. Soc. 127, 10004-10005
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 10004-10005
    • De Carvalho, L.P.1    Argyrou, A.2    Blanchard, J.S.3
  • 18
    • 68249090787 scopus 로고    scopus 로고
    • Mapping of the allosteric network in the regulation of α-isopropylmalate synthase from Mycobacterium tuberculosis by the feedback inhibitor l -leucine: Solution-phase H/D exchange monitored by FT-ICR mass spectrometry
    • Frantom, P. A., Zhang, H. M., Emmett, M. R., Marshall, A. G., and Blanchard, J. S. (2009) Mapping of the allosteric network in the regulation of α-isopropylmalate synthase from Mycobacterium tuberculosis by the feedback inhibitor l -leucine: Solution-phase H/D exchange monitored by FT-ICR mass spectrometry Biochemistry 48, 7457-7464
    • (2009) Biochemistry , vol.48 , pp. 7457-7464
    • Frantom, P.A.1    Zhang, H.M.2    Emmett, M.R.3    Marshall, A.G.4    Blanchard, J.S.5
  • 19
    • 84885015070 scopus 로고    scopus 로고
    • V-type allosteric inhibition is described by a shift in the rate-determining step for α-isopropylmalate synthase from Mycobacterium tuberculosis
    • Casey, A. K., Schwalm, E. L., Hays, B. N., and Frantom, P. A. (2013) V-type allosteric inhibition is described by a shift in the rate-determining step for α-isopropylmalate synthase from Mycobacterium tuberculosis Biochemistry 52, 6737-6739
    • (2013) Biochemistry , vol.52 , pp. 6737-6739
    • Casey, A.K.1    Schwalm, E.L.2    Hays, B.N.3    Frantom, P.A.4
  • 20
    • 0032924783 scopus 로고    scopus 로고
    • (R)-Citramalate synthase in methanogenic archaea
    • Howell, D. M., Xu, H., and White, R. H. (1999) (R)-Citramalate synthase in methanogenic archaea J. Bacteriol. 181, 331-333
    • (1999) J. Bacteriol. , vol.181 , pp. 331-333
    • Howell, D.M.1    Xu, H.2    White, R.H.3
  • 21
    • 33746267476 scopus 로고    scopus 로고
    • Kinetic and chemical mechanism of α-isopropylmalate synthase from Mycobacterium tuberculosis
    • de Carvalho, L. P. and Blanchard, J. S. (2006) Kinetic and chemical mechanism of α-isopropylmalate synthase from Mycobacterium tuberculosis Biochemistry 45, 8988-8999
    • (2006) Biochemistry , vol.45 , pp. 8988-8999
    • De Carvalho, L.P.1    Blanchard, J.S.2
  • 22
    • 0002379632 scopus 로고
    • Theoretical Basis and Mechanistic Utility of Solvent Isotope Effects
    • (Cook, P. F. Ed.), CRC Press, Boca Raton, FL
    • Quinn, D. M. and Sutton, L. D. (1991) Theoretical Basis and Mechanistic Utility of Solvent Isotope Effects. In Enzyme Mechanism from Isotope Effects (Cook, P. F., Ed.) pp 73-126, CRC Press, Boca Raton, FL.
    • (1991) Enzyme Mechanism from Isotope Effects , pp. 73-126
    • Quinn, D.M.1    Sutton, L.D.2
  • 23
    • 64549143351 scopus 로고    scopus 로고
    • Kinetic evidence for interdomain communication in the allosteric regulation of α-isopropylmalate synthase from Mycobacterium tuberculosis
    • de Carvalho, L. P., Frantom, P. A., Argyrou, A., and Blanchard, J. S. (2009) Kinetic evidence for interdomain communication in the allosteric regulation of α-isopropylmalate synthase from Mycobacterium tuberculosis Biochemistry 48, 1996-2004
    • (2009) Biochemistry , vol.48 , pp. 1996-2004
    • De Carvalho, L.P.1    Frantom, P.A.2    Argyrou, A.3    Blanchard, J.S.4
  • 24
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
    • Katoh, K. and Standley, D. M. (2013) MAFFT multiple sequence alignment software version 7: Improvements in performance and usability Mol. Biol. Evol. 30, 772-780
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 27
    • 79952202448 scopus 로고    scopus 로고
    • Cytoscape: Software for visualization and analysis of biological networks
    • Kohl, M., Wiese, S., and Warscheid, B. (2011) Cytoscape: Software for visualization and analysis of biological networks Methods Mol. Biol. 696, 291-303
    • (2011) Methods Mol. Biol. , vol.696 , pp. 291-303
    • Kohl, M.1    Wiese, S.2    Warscheid, B.3
  • 28
    • 33750715147 scopus 로고    scopus 로고
    • Acid-base chemical mechanism of homocitrate synthase from Saccharomyces cerevisiae
    • Qian, J., West, A. H., and Cook, P. F. (2006) Acid-base chemical mechanism of homocitrate synthase from Saccharomyces cerevisiae Biochemistry 45, 12136-12143
    • (2006) Biochemistry , vol.45 , pp. 12136-12143
    • Qian, J.1    West, A.H.2    Cook, P.F.3
  • 29
    • 84892616894 scopus 로고    scopus 로고
    • Allosteric regulation in phosphofructokinase from the extreme thermophile Thermus thermophilus
    • McGresham, M. S., Lovingshimer, M., and Reinhart, G. D. (2014) Allosteric regulation in phosphofructokinase from the extreme thermophile Thermus thermophilus Biochemistry 53, 270-278
    • (2014) Biochemistry , vol.53 , pp. 270-278
    • McGresham, M.S.1    Lovingshimer, M.2    Reinhart, G.D.3
  • 30
    • 37249067732 scopus 로고    scopus 로고
    • The origin of protein interactions and allostery in colocalization
    • Kuriyan, J. and Eisenberg, D. (2007) The origin of protein interactions and allostery in colocalization Nature 450, 983-990
    • (2007) Nature , vol.450 , pp. 983-990
    • Kuriyan, J.1    Eisenberg, D.2
  • 31
    • 84858638497 scopus 로고    scopus 로고
    • Removal of the C-terminal regulatory domain of α-isopropylmalate synthase disrupts functional substrate binding
    • Huisman, F. H., Koon, N., Bulloch, E. M., Baker, H. M., Baker, E. N., Squire, C. J., and Parker, E. J. (2012) Removal of the C-terminal regulatory domain of α-isopropylmalate synthase disrupts functional substrate binding Biochemistry 51, 2289-2297
    • (2012) Biochemistry , vol.51 , pp. 2289-2297
    • Huisman, F.H.1    Koon, N.2    Bulloch, E.M.3    Baker, H.M.4    Baker, E.N.5    Squire, C.J.6    Parker, E.J.7
  • 32
    • 79952304238 scopus 로고    scopus 로고
    • From amino acid to glucosinolate biosynthesis: Protein sequence changes in the evolution of methylthioalkylmalate synthase in Arabidopsis
    • de Kraker, J. W. and Gershenzon, J. (2011) From amino acid to glucosinolate biosynthesis: Protein sequence changes in the evolution of methylthioalkylmalate synthase in Arabidopsis Plant Cell 23, 38-53
    • (2011) Plant Cell , vol.23 , pp. 38-53
    • De Kraker, J.W.1    Gershenzon, J.2


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