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Volumn 5 MAY, Issue , 2014, Pages

Vitamin D and the RNA transcriptome: More than mRNA regulation

Author keywords

Epigenetic; Microarray; MicroRNA; Transcriptome; VDR

Indexed keywords

BETA CATENIN; COMPLEMENT FACTOR H; COP9 SIGNALOSOME SUBUNIT 2; CYCLIN D3; E1A ASSOCIATED P300 PROTEIN; HAIR GROWTH ASSOCIATED PROTEIN; MEMBRANE PROTEIN; NAKED CUTICLE HOMOLOG 2; NON RECEPTOR PROTEIN TYROSINE PHOSPHATASE 3; NUCLEAR COREPRESSOR 1; NUCLEAR RECEPTOR COACTIVATOR 6; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR BINDING PROTEIN; PROLINE CARBOXYPEPTIDASE; PROTEIN P53; PROTEIN SNW1; PROTEIN SRPK1; RETINOID X RECEPTOR ALPHA; RETINOID X RECEPTOR BETA; SILENCING MEDIATOR OF RETINOID AND THYROID HORMONE RECEPTOR; SMAD3 PROTEIN; UNCLASSIFIED DRUG; UNTRANSLATED RNA; VITAMIN D RECEPTOR;

EID: 84904344387     PISSN: None     EISSN: 1664042X     Source Type: Journal    
DOI: 10.3389/fphys.2014.00181     Document Type: Review
Times cited : (70)

References (167)
  • 1
    • 0034976117 scopus 로고    scopus 로고
    • Regulation of gene Expression by 1alpha,25-dihydroxyvitamin D3 and Its analog EB1089 under growth-inhibitory conditions in squamous carcinoma Cells
    • doi: 10.1210/mend.15.7.0655
    • Akutsu, N., Lin, R., Bastien, Y., Bestawros, A., Enepekides, D. J., Black, M. J., et al. (2001). Regulation of gene Expression by 1alpha,25-dihydroxyvitamin D3 and Its analog EB1089 under growth-inhibitory conditions in squamous carcinoma Cells. Mol. Endocrinol. 15, 1127-1139. doi: 10.1210/mend.15.7.0655.
    • (2001) Mol. Endocrinol. , vol.15 , pp. 1127-1139
    • Akutsu, N.1    Lin, R.2    Bastien, Y.3    Bestawros, A.4    Enepekides, D.J.5    Black, M.J.6
  • 2
    • 84860459609 scopus 로고    scopus 로고
    • MicroRNA-22 is induced by vitamin D and contributes to its antiproliferative, antimigratory and gene regulatory effects in colon cancer cells
    • doi: 10.1093/hmg/dds031
    • Alvarez-Diaz, S., Valle, N., Ferrer-Mayorga, G., Lombardia, L., Herrera, M., Dominguez, O., et al. (2012). MicroRNA-22 is induced by vitamin D and contributes to its antiproliferative, antimigratory and gene regulatory effects in colon cancer cells. Hum. Mol. Genet. 21, 2157-2165. doi: 10.1093/hmg/dds031.
    • (2012) Hum. Mol. Genet. , vol.21 , pp. 2157-2165
    • Alvarez-Diaz, S.1    Valle, N.2    Ferrer-Mayorga, G.3    Lombardia, L.4    Herrera, M.5    Dominguez, O.6
  • 3
    • 84876046735 scopus 로고    scopus 로고
    • Oncomir miR-125b suppresses p14(ARF) to modulate p53-dependent and p53-independent apoptosis in prostate cancer
    • e61064. doi: 10.1371/journal.pone.0061064
    • Amir, S., Ma, A. H., Shi, X. B., Xue, L., Kung, H. J., and Devere White, R. W. (2013). Oncomir miR-125b suppresses p14(ARF) to modulate p53-dependent and p53-independent apoptosis in prostate cancer. PLoS ONE 8:e61064. doi: 10.1371/journal.pone.0061064.
    • (2013) PLoS ONE , vol.8
    • Amir, S.1    Ma, A.H.2    Shi, X.B.3    Xue, L.4    Kung, H.J.5    Devere White, R.W.6
  • 4
    • 0042854903 scopus 로고    scopus 로고
    • Quantification of mRNA for the vitamin D metabolizing enzymes CYP27B1 and CYP24 and vitamin D receptor in kidney using real-time reverse transcriptase-polymerase chain reaction
    • doi: 10.1677/jme.0.0310123
    • Anderson, P. H., O'Loughlin, P. D., May, B. K., and Morris, H. A. (2003). Quantification of mRNA for the vitamin D metabolizing enzymes CYP27B1 and CYP24 and vitamin D receptor in kidney using real-time reverse transcriptase-polymerase chain reaction. J. Mol. Endocrinol. 31, 123-132. doi: 10.1677/jme.0.0310123.
    • (2003) J. Mol. Endocrinol. , vol.31 , pp. 123-132
    • Anderson, P.H.1    O'Loughlin, P.D.2    May, B.K.3    Morris, H.A.4
  • 5
    • 84887090258 scopus 로고    scopus 로고
    • Splicing kinase SRPK1 conforms to the landscape of its SR protein substrate
    • doi: 10.1021/bi4010864
    • Aubol, B. E., Jamros, M. A., McGlone, M. L., and Adams, J. A. (2013). Splicing kinase SRPK1 conforms to the landscape of its SR protein substrate. Biochemistry 52, 7595-7605. doi: 10.1021/bi4010864.
    • (2013) Biochemistry , vol.52 , pp. 7595-7605
    • Aubol, B.E.1    Jamros, M.A.2    McGlone, M.L.3    Adams, J.A.4
  • 6
    • 79251567975 scopus 로고    scopus 로고
    • The vitamin D analog, TX527, promotes a human CD4+CD25highCD127low regulatory T cell profile and induces a migratory signature specific for homing to sites of inflammation
    • doi: 10.4049/jimmunol.1000695
    • Baeke, F., Korf, H., Overbergh, L., Verstuyf, A., Thorrez, L., Van Lommel, L., et al. (2011). The vitamin D analog, TX527, promotes a human CD4+CD25highCD127low regulatory T cell profile and induces a migratory signature specific for homing to sites of inflammation. J. Immunol. 186, 132-142. doi: 10.4049/jimmunol.1000695.
    • (2011) J. Immunol. , vol.186 , pp. 132-142
    • Baeke, F.1    Korf, H.2    Overbergh, L.3    Verstuyf, A.4    Thorrez, L.5    Van Lommel, L.6
  • 8
    • 13444304325 scopus 로고    scopus 로고
    • NCBI GEO: mining millions of expression profiles-database and tools
    • doi: 10.1093/nar/gki022
    • Barrett, T., Suzek, T. O., Troup, D. B., Wilhite, S. E., Ngau, W. C., Ledoux, P., et al. (2005). NCBI GEO: mining millions of expression profiles-database and tools. Nucleic Acids Res. 33, D562-D566. doi: 10.1093/nar/gki022.
    • (2005) Nucleic Acids Res. , vol.33
    • Barrett, T.1    Suzek, T.O.2    Troup, D.B.3    Wilhite, S.E.4    Ngau, W.C.5    Ledoux, P.6
  • 10
    • 0032569022 scopus 로고    scopus 로고
    • Isolation and characterization of a novel coactivator protein, NCoA-62, involved in vitamin D-mediated transcription
    • doi: 10.1074/jbc.273.26.16434
    • Baudino, T. A., Kraichely, D. M., Jefcoat, S. C. Jr., Winchester, S. K., Partridge, N. C., and MacDonald, P. N. (1998). Isolation and characterization of a novel coactivator protein, NCoA-62, involved in vitamin D-mediated transcription. J. Biol. Chem. 273, 16434-16441. doi: 10.1074/jbc.273.26.16434.
    • (1998) J. Biol. Chem. , vol.273 , pp. 16434-16441
    • Baudino, T.A.1    Kraichely, D.M.2    Jefcoat Jr., S.C.3    Winchester, S.K.4    Partridge, N.C.5    MacDonald, P.N.6
  • 11
    • 84865745578 scopus 로고    scopus 로고
    • The making of ENCODE: lessons for big-data projects
    • doi: 10.1038/489049a
    • Birney, E. (2012). The making of ENCODE: lessons for big-data projects. Nature 489, 49-51. doi: 10.1038/489049a.
    • (2012) Nature , vol.489 , pp. 49-51
    • Birney, E.1
  • 12
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • doi: 10.1038/nature05874
    • Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigo, R., Gingeras, T. R., Margulies, E. H., et al. (2007). Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447, 799-816. doi: 10.1038/nature05874.
    • (2007) Nature , vol.447 , pp. 799-816
    • Birney, E.1    Stamatoyannopoulos, J.A.2    Dutta, A.3    Guigo, R.4    Gingeras, T.R.5    Margulies, E.H.6
  • 13
    • 34247896985 scopus 로고    scopus 로고
    • 1alpha,25-dihydroxy-vitamin D3 stimulation of bronchial smooth muscle cells induces autocrine, contractility, and remodeling processes
    • doi: 10.1152/physiolgenomics.00134.2006
    • Bosse, Y., Maghni, K., and Hudson, T. J. (2007). 1alpha,25-dihydroxy-vitamin D3 stimulation of bronchial smooth muscle cells induces autocrine, contractility, and remodeling processes. Physiol. Genomics 29, 161-168. doi: 10.1152/physiolgenomics.00134.2006.
    • (2007) Physiol. Genomics , vol.29 , pp. 161-168
    • Bosse, Y.1    Maghni, K.2    Hudson, T.J.3
  • 14
    • 84865712382 scopus 로고    scopus 로고
    • Annotation of functional variation in personal genomes using RegulomeDB
    • doi: 10.1101/gr.137323.112
    • Boyle, A. P., Hong, E. L., Hariharan, M., Cheng, Y., Schaub, M. A., Kasowski, M., et al. (2012). Annotation of functional variation in personal genomes using RegulomeDB. Genome Res. 22, 1790-1797. doi: 10.1101/gr.137323.112.
    • (2012) Genome Res. , vol.22 , pp. 1790-1797
    • Boyle, A.P.1    Hong, E.L.2    Hariharan, M.3    Cheng, Y.4    Schaub, M.A.5    Kasowski, M.6
  • 15
    • 84903448252 scopus 로고    scopus 로고
    • Effects of a healthy Nordic diet on plasma 25-hydroxyvitamin D concentration in subjects with metabolic syndrome: a randomized, placebo-controlled trial (SYSDIET)
    • doi: 10.1007/s00394-014-0674-3. [Epub ahead of print].
    • Brader, L., Rejnmark, L., Carlberg, C., Schwab, U., Kolehmainen, M., Rosqvist, F., et al. (2014). Effects of a healthy Nordic diet on plasma 25-hydroxyvitamin D concentration in subjects with metabolic syndrome: a randomized, placebo-controlled trial (SYSDIET). Eur. J. Nutr. doi: 10.1007/s00394-014-0674-3. [Epub ahead of print].
    • (2014) Eur. J. Nutr.
    • Brader, L.1    Rejnmark, L.2    Carlberg, C.3    Schwab, U.4    Kolehmainen, M.5    Rosqvist, F.6
  • 16
    • 18344396568 scopus 로고    scopus 로고
    • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
    • doi: 10.1038/ng1201-365
    • Brazma, A., Hingamp, P., Quackenbush, J., Sherlock, G., Spellman, P., Stoeckert, C., et al. (2001). Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat. Genet. 29, 365-371. doi: 10.1038/ng1201-365.
    • (2001) Nat. Genet. , vol.29 , pp. 365-371
    • Brazma, A.1    Hingamp, P.2    Quackenbush, J.3    Sherlock, G.4    Spellman, P.5    Stoeckert, C.6
  • 17
    • 0030737494 scopus 로고    scopus 로고
    • Inhibition of proliferation of prostate cancer cells by a 19-nor-hexafluoride vitamin D3 analogue involves the induction of p21waf1, p27kip1 and E-cadherin
    • doi: 10.1677/jme.0.0190015
    • Campbell, M. J., Elstner, E., Holden, S., Uskokovic, M., and Koeffler, H. P. (1997). Inhibition of proliferation of prostate cancer cells by a 19-nor-hexafluoride vitamin D3 analogue involves the induction of p21waf1, p27kip1 and E-cadherin. J. Mol. Endocrinol. 19, 15-27. doi: 10.1677/jme.0.0190015.
    • (1997) J. Mol. Endocrinol. , vol.19 , pp. 15-27
    • Campbell, M.J.1    Elstner, E.2    Holden, S.3    Uskokovic, M.4    Koeffler, H.P.5
  • 18
    • 84871431768 scopus 로고    scopus 로고
    • Vitamin D receptor signaling mechanisms: integrated actions of a well-defined transcription factor
    • doi: 10.1016/j.steroids.2012.10.019
    • Carlberg, C., and Campbell, M. J. (2013). Vitamin D receptor signaling mechanisms: integrated actions of a well-defined transcription factor. Steroids 78, 127-136. doi: 10.1016/j.steroids.2012.10.019.
    • (2013) Steroids , vol.78 , pp. 127-136
    • Carlberg, C.1    Campbell, M.J.2
  • 19
    • 33750442923 scopus 로고    scopus 로고
    • Genome-wide analysis of estrogen receptor binding sites
    • doi: 10.1038/ng1901
    • Carroll, J. S., Meyer, C. A., Song, J., Li, W., Geistlinger, T. R., Eeckhoute, J., et al. (2006). Genome-wide analysis of estrogen receptor binding sites. Nat. Genet. 38, 1289-1297. doi: 10.1038/ng1901.
    • (2006) Nat. Genet. , vol.38 , pp. 1289-1297
    • Carroll, J.S.1    Meyer, C.A.2    Song, J.3    Li, W.4    Geistlinger, T.R.5    Eeckhoute, J.6
  • 20
    • 0033066683 scopus 로고    scopus 로고
    • Critical role played by cyclin D3 in the MyoD-mediated arrest of cell cycle during myoblast differentiation
    • Cenciarelli, C., De Santa, F., Puri, P. L., Mattei, E., Ricci, L., Bucci, F., et al. (1999). Critical role played by cyclin D3 in the MyoD-mediated arrest of cell cycle during myoblast differentiation. Mol. Cell. Biol. 19, 5203-5217.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 5203-5217
    • Cenciarelli, C.1    De Santa, F.2    Puri, P.L.3    Mattei, E.4    Ricci, L.5    Bucci, F.6
  • 21
    • 53349177819 scopus 로고    scopus 로고
    • Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases
    • doi: 10.1038/cr.2008.282
    • Chen, X., Ba, Y., Ma, L., Cai, X., Yin, Y., Wang, K., et al. (2008). Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res. 18, 997-1006. doi: 10.1038/cr.2008.282.
    • (2008) Cell Res. , vol.18 , pp. 997-1006
    • Chen, X.1    Ba, Y.2    Ma, L.3    Cai, X.4    Yin, Y.5    Wang, K.6
  • 22
    • 0020073352 scopus 로고
    • 1,25-dihydroxyvitamin D3 receptors in human epithelial cancer cell lines
    • Colston, K., Colston, M. J., Fieldsteel, A. H., and Feldman, D. (1982). 1,25-dihydroxyvitamin D3 receptors in human epithelial cancer cell lines. Cancer Res. 42, 856-859.
    • (1982) Cancer Res. , vol.42 , pp. 856-859
    • Colston, K.1    Colston, M.J.2    Fieldsteel, A.H.3    Feldman, D.4
  • 23
    • 0024575257 scopus 로고
    • Possible role for vitamin D in controlling breast cancer cell proliferation
    • Colston, K. W., Berger, U., and Coombes, R. C. (1989). Possible role for vitamin D in controlling breast cancer cell proliferation. Lancet 1, 188-191.
    • (1989) Lancet , vol.1 , pp. 188-191
    • Colston, K.W.1    Berger, U.2    Coombes, R.C.3
  • 24
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • doi: 10.1038/nature05874
    • Consortium, E. P., Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigo, R., Gingeras, T. R., et al. (2007). Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447, 799-816. doi: 10.1038/nature05874.
    • (2007) Nature , vol.447 , pp. 799-816
    • Consortium, E.P.1    Birney, E.2    Stamatoyannopoulos, J.A.3    Dutta, A.4    Guigo, R.5    Gingeras, T.R.6
  • 25
    • 84878682420 scopus 로고    scopus 로고
    • The Genotype-Tissue Expression (GTEx) project
    • doi: 10.1038/ng.2653
    • Consortium, G. T. (2013). The Genotype-Tissue Expression (GTEx) project. Nat. Genet. 45, 580-585. doi: 10.1038/ng.2653.
    • (2013) Nat. Genet. , vol.45 , pp. 580-585
    • Consortium, G.T.1
  • 26
    • 70749144760 scopus 로고    scopus 로고
    • Anti-proliferative action of vitamin D in MCF7 is still active after siRNA-VDR knock-down
    • doi: 10.1186/1471-2164-10-499
    • Costa, J. L., Eijk, P. P., van de Wiel, M. A., ten Berge, D., Schmitt, F., Narvaez, C. J., et al. (2009). Anti-proliferative action of vitamin D in MCF7 is still active after siRNA-VDR knock-down. BMC Genomics 10:499. doi: 10.1186/1471-2164-10-499.
    • (2009) BMC Genomics , vol.10 , pp. 499
    • Costa, J.L.1    Eijk, P.P.2    van de Wiel, M.A.3    ten Berge, D.4    Schmitt, F.5    Narvaez, C.J.6
  • 27
    • 58149156163 scopus 로고    scopus 로고
    • The effect of differentiation on 1,25 dihydroxyvitamin D-mediated gene expression in the enterocyte-like cell line, Caco-2
    • doi: 10.1002/jcp.21574
    • Cui, M., Klopot, A., Jiang, Y., and Fleet, J. C. (2009). The effect of differentiation on 1,25 dihydroxyvitamin D-mediated gene expression in the enterocyte-like cell line, Caco-2. J. Cell. Physiol. 218, 113-121. doi: 10.1002/jcp.21574.
    • (2009) J. Cell. Physiol. , vol.218 , pp. 113-121
    • Cui, M.1    Klopot, A.2    Jiang, Y.3    Fleet, J.C.4
  • 28
    • 0037458624 scopus 로고    scopus 로고
    • Cyclin D3 is a cofactor of retinoic acid receptors, modulating their activity in the presence of cellular retinoic acid-binding protein II
    • doi: 10.1074/jbc.M210697200
    • Despouy, G., Bastie, J. N., Deshaies, S., Balitrand, N., Mazharian, A., Rochette-Egly, C., et al. (2003). Cyclin D3 is a cofactor of retinoic acid receptors, modulating their activity in the presence of cellular retinoic acid-binding protein II. J. Biol. Chem. 278, 6355-6362. doi: 10.1074/jbc.M210697200.
    • (2003) J. Biol. Chem. , vol.278 , pp. 6355-6362
    • Despouy, G.1    Bastie, J.N.2    Deshaies, S.3    Balitrand, N.4    Mazharian, A.5    Rochette-Egly, C.6
  • 29
    • 84876928036 scopus 로고    scopus 로고
    • A vitamin D receptor/SMAD genomic circuit gates hepatic fibrotic response
    • doi: 10.1016/j.cell.2013.03.028
    • Ding, N., Yu, R. T., Subramaniam, N., Sherman, M. H., Wilson, C., Rao, R., et al. (2013). A vitamin D receptor/SMAD genomic circuit gates hepatic fibrotic response. Cell 153, 601-613. doi: 10.1016/j.cell.2013.03.028.
    • (2013) Cell , vol.153 , pp. 601-613
    • Ding, N.1    Yu, R.T.2    Subramaniam, N.3    Sherman, M.H.4    Wilson, C.5    Rao, R.6
  • 30
    • 33846060705 scopus 로고    scopus 로고
    • Normalization of microarray data: single-labeled and dual-labeled arrays
    • Do, J. H., and Choi, D. K. (2006). Normalization of microarray data: single-labeled and dual-labeled arrays. Mol. Cells 22, 254-261.
    • (2006) Mol. Cells , vol.22 , pp. 254-261
    • Do, J.H.1    Choi, D.K.2
  • 31
    • 62449302589 scopus 로고    scopus 로고
    • Elongation dynamics shape bursty transcription and translation
    • doi: 10.1073/pnas.0803507106
    • Dobrzynski, M., and Bruggeman, F. J. (2009). Elongation dynamics shape bursty transcription and translation. Proc. Natl. Acad. Sci. U.S.A. 106, 2583-2588. doi: 10.1073/pnas.0803507106.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 2583-2588
    • Dobrzynski, M.1    Bruggeman, F.J.2
  • 32
    • 84873564427 scopus 로고    scopus 로고
    • Recruitment of NCOR1 to VDR target genes is enhanced in prostate cancer cells and associates with altered DNA methylation patterns
    • doi: 10.1093/carcin/bgs331
    • Doig, C. L., Singh, P. K., Dhiman, V. K., Thorne, J. L., Battaglia, S., Sobolewski, M., et al. (2013). Recruitment of NCOR1 to VDR target genes is enhanced in prostate cancer cells and associates with altered DNA methylation patterns. Carcinogenesis 34, 248-256. doi: 10.1093/carcin/bgs331.
    • (2013) Carcinogenesis , vol.34 , pp. 248-256
    • Doig, C.L.1    Singh, P.K.2    Dhiman, V.K.3    Thorne, J.L.4    Battaglia, S.5    Sobolewski, M.6
  • 33
    • 84875847924 scopus 로고    scopus 로고
    • Is junk DNA bunk? A critique of ENCODE
    • doi: 10.1073/pnas.1221376110
    • Doolittle, W. F. (2013). Is junk DNA bunk? A critique of ENCODE. Proc. Natl. Acad. Sci. U.S.A. 110, 5294-5300. doi: 10.1073/pnas.1221376110.
    • (2013) Proc. Natl. Acad. Sci. U.S.A. , vol.110 , pp. 5294-5300
    • Doolittle, W.F.1
  • 34
    • 77957949016 scopus 로고    scopus 로고
    • Vitamin D insufficiency and prognosis in non-Hodgkin's lymphoma
    • doi: 10.1200/JCO.2010.28.6674
    • Drake, M. T., Maurer, M. J., Link, B. K., Habermann, T. M., Ansell, S. M., Micallef, I. N., et al. (2010). Vitamin D insufficiency and prognosis in non-Hodgkin's lymphoma. J. Clin. Oncol. 28, 4191-4198. doi: 10.1200/JCO.2010.28.6674.
    • (2010) J. Clin. Oncol. , vol.28 , pp. 4191-4198
    • Drake, M.T.1    Maurer, M.J.2    Link, B.K.3    Habermann, T.M.4    Ansell, S.M.5    Micallef, I.N.6
  • 35
    • 3042689432 scopus 로고    scopus 로고
    • The genes of the coactivator TIF2 and the corepressor SMRT are primary 1alpha,25(OH)2D3 targets
    • doi: 10.1016/j.jsbmb.2004.03.079.
    • Dunlop, T. W., Vaisanen, S., Frank, C., and Carlberg, C. (2004). The genes of the coactivator TIF2 and the corepressor SMRT are primary 1alpha,25(OH)2D3 targets. J. Steroid Biochem. Mol. Biol. 89-90, 257-260. doi: 10.1016/j.jsbmb.2004.03.079.
    • (2004) J. Steroid Biochem. Mol. Biol. , vol.89-90 , pp. 257-260
    • Dunlop, T.W.1    Vaisanen, S.2    Frank, C.3    Carlberg, C.4
  • 36
    • 0034614617 scopus 로고    scopus 로고
    • Regulation of rat cytochrome P450C24 (CYP24) gene expression. Evidence for functional cooperation of Ras-activated Ets transcription factors with the vitamin D receptor in 1,25-dihydroxyvitamin D(3)-mediated induction
    • doi: 10.1074/jbc.275.1.47
    • Dwivedi, P. P., Omdahl, J. L., Kola, I., Hume, D. A., and May, B. K. (2000). Regulation of rat cytochrome P450C24 (CYP24) gene expression. Evidence for functional cooperation of Ras-activated Ets transcription factors with the vitamin D receptor in 1,25-dihydroxyvitamin D(3)-mediated induction. J. Biol. Chem. 275, 47-55. doi: 10.1074/jbc.275.1.47.
    • (2000) J. Biol. Chem. , vol.275 , pp. 47-55
    • Dwivedi, P.P.1    Omdahl, J.L.2    Kola, I.3    Hume, D.A.4    May, B.K.5
  • 37
    • 4344579502 scopus 로고    scopus 로고
    • Microarray analysis of 1alpha, 25-dihydroxyvitamin D3-treated MC3T3-E1 cells
    • doi: 10.1016/j.jsbmb.2004.03.008.
    • Eelen, G., Verlinden, L., Van Camp, M., Mathieu, C., Carmeliet, G., Bouillon, R., et al. (2004). Microarray analysis of 1alpha,25-dihydroxyvitamin D3-treated MC3T3-E1 cells. J. Steroid Biochem. Mol. Biol. 89-90, 405-407. doi: 10.1016/j.jsbmb.2004.03.008.
    • (2004) J. Steroid Biochem. Mol. Biol. , vol.89-90 , pp. 405-407
    • Eelen, G.1    Verlinden, L.2    Van Camp, M.3    Mathieu, C.4    Carmeliet, G.5    Bouillon, R.6
  • 38
    • 1542328938 scopus 로고    scopus 로고
    • Characterization of amplifiable, circulating RNA in plasma and its potential as a tool for cancer diagnostics
    • doi: 10.1373/clinchem.2003.028506
    • El-Hefnawy, T., Raja, S., Kelly, L., Bigbee, W. L., Kirkwood, J. M., Luketich, J. D., et al. (2004). Characterization of amplifiable, circulating RNA in plasma and its potential as a tool for cancer diagnostics. Clin. Chem. 50, 564-573. doi: 10.1373/clinchem.2003.028506.
    • (2004) Clin. Chem. , vol.50 , pp. 564-573
    • El-Hefnawy, T.1    Raja, S.2    Kelly, L.3    Bigbee, W.L.4    Kirkwood, J.M.5    Luketich, J.D.6
  • 39
    • 51749113106 scopus 로고    scopus 로고
    • Inactivation of the vitamin D receptor enhances susceptibility of murine skin to UV-induced tumorigenesis
    • doi: 10.1038/jid.2008.131
    • Ellison, T. I., Smith, M. K., Gilliam, A. C., and MacDonald, P. N. (2008). Inactivation of the vitamin D receptor enhances susceptibility of murine skin to UV-induced tumorigenesis. J. Invest. Dermatol. 128, 2508-2517. doi: 10.1038/jid.2008.131.
    • (2008) J. Invest. Dermatol. , vol.128 , pp. 2508-2517
    • Ellison, T.I.1    Smith, M.K.2    Gilliam, A.C.3    MacDonald, P.N.4
  • 40
    • 0032789614 scopus 로고    scopus 로고
    • Novel 20-epi-vitamin D3 analog combined with 9-cis-retinoic acid markedly inhibits colony growth of prostate cancer cells
    • doi: 10.1002/(SICI)1097-0045(19990801)40:3%3C141::AID-PROS1%3E3.0.CO;2-C
    • Elstner, E., Campbell, M. J., Munker, R., Shintaku, P., Binderup, L., Heber, D., et al. (1999). Novel 20-epi-vitamin D3 analog combined with 9-cis-retinoic acid markedly inhibits colony growth of prostate cancer cells. Prostate 40, 141-149. doi: 10.1002/(SICI)1097-0045(19990801)40:3%3C141::AID-PROS1%3E3.0.CO;2-C.
    • (1999) Prostate , vol.40 , pp. 141-149
    • Elstner, E.1    Campbell, M.J.2    Munker, R.3    Shintaku, P.4    Binderup, L.5    Heber, D.6
  • 41
    • 82255164258 scopus 로고    scopus 로고
    • ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression
    • doi: 10.1093/bioinformatics/btr548
    • Engreitz, J. M., Chen, R., Morgan, A. A., Dudley, J. T., Mallelwar, R., and Butte, A. J. (2011). ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression. Bioinformatics 27, 3317-3318. doi: 10.1093/bioinformatics/btr548.
    • (2011) Bioinformatics , vol.27 , pp. 3317-3318
    • Engreitz, J.M.1    Chen, R.2    Morgan, A.A.3    Dudley, J.T.4    Mallelwar, R.5    Butte, A.J.6
  • 42
    • 66149167562 scopus 로고    scopus 로고
    • Integration of microRNA miR-122 in hepatic circadian gene expression
    • doi: 10.1101/gad.1781009
    • Gatfield, D., Le Martelot, G., Vejnar, C. E., Gerlach, D., Schaad, O., Fleury-Olela, F., et al. (2009). Integration of microRNA miR-122 in hepatic circadian gene expression. Genes Dev. 23, 1313-1326. doi: 10.1101/gad.1781009.
    • (2009) Genes Dev. , vol.23 , pp. 1313-1326
    • Gatfield, D.1    Le Martelot, G.2    Vejnar, C.E.3    Gerlach, D.4    Schaad, O.5    Fleury-Olela, F.6
  • 44
    • 33847047461 scopus 로고    scopus 로고
    • Epigenetics: a landscape takes shape
    • doi: 10.1016/j.cell.2007.02.006
    • Goldberg, A. D., Allis, C. D., and Bernstein, E. (2007). Epigenetics: a landscape takes shape. Cell 128, 635-638. doi: 10.1016/j.cell.2007.02.006.
    • (2007) Cell , vol.128 , pp. 635-638
    • Goldberg, A.D.1    Allis, C.D.2    Bernstein, E.3
  • 45
    • 33748576262 scopus 로고    scopus 로고
    • Prostate cells exposed to lycopene in vitro liberate lycopene-enriched exosomes
    • doi: 10.1111/j.1464-410X.2006.06434.x
    • Goyal, A., Delves, G. H., Chopra, M., Lwaleed, B. A., and Cooper, A. J. (2006). Prostate cells exposed to lycopene in vitro liberate lycopene-enriched exosomes. BJU Int. 98, 907-911. doi: 10.1111/j.1464-410X.2006.06434.x.
    • (2006) BJU Int. , vol.98 , pp. 907-911
    • Goyal, A.1    Delves, G.H.2    Chopra, M.3    Lwaleed, B.A.4    Cooper, A.J.5
  • 46
    • 84878110531 scopus 로고    scopus 로고
    • 1,25-Dihydroxyvitamin D3 up-regulates expression of hsa-let-7a-2 through the interaction of VDR/VDRE in human lung cancer A549 cells
    • doi: 10.1016/j.gene.2013.03.065
    • Guan, H., Liu, C., Chen, Z., Wang, L., Li, C., Zhao, J., et al. (2013). 1,25-Dihydroxyvitamin D3 up-regulates expression of hsa-let-7a-2 through the interaction of VDR/VDRE in human lung cancer A549 cells. Gene 522, 142-146. doi: 10.1016/j.gene.2013.03.065.
    • (2013) Gene , vol.522 , pp. 142-146
    • Guan, H.1    Liu, C.2    Chen, Z.3    Wang, L.4    Li, C.5    Zhao, J.6
  • 47
    • 79955646565 scopus 로고    scopus 로고
    • Mechanism of 1alpha,25-dihydroxyvitamin D(3)-dependent repression of interleukin-12B
    • doi: 10.1016/j.bbamcr.2011.01.037
    • Gynther, P., Toropainen, S., Matilainen, J. M., Seuter, S., Carlberg, C., and Vaisanen, S. (2011). Mechanism of 1alpha,25-dihydroxyvitamin D(3)-dependent repression of interleukin-12B. Biochim. Biophys. Acta 1813, 810-818. doi: 10.1016/j.bbamcr.2011.01.037.
    • (2011) Biochim. Biophys. Acta , vol.1813 , pp. 810-818
    • Gynther, P.1    Toropainen, S.2    Matilainen, J.M.3    Seuter, S.4    Carlberg, C.5    Vaisanen, S.6
  • 48
    • 33645746620 scopus 로고    scopus 로고
    • Targeting the RNA splicing machinery as a novel treatment strategy for pancreatic carcinoma
    • doi: 10.1158/0008-5472.CAN-05-4065
    • Hayes, G. M., Carrigan, P. E., Beck, A. M., and Miller, L. J. (2006). Targeting the RNA splicing machinery as a novel treatment strategy for pancreatic carcinoma. Cancer Res. 66, 3819-3827. doi: 10.1158/0008-5472.CAN-05-4065.
    • (2006) Cancer Res. , vol.66 , pp. 3819-3827
    • Hayes, G.M.1    Carrigan, P.E.2    Beck, A.M.3    Miller, L.J.4
  • 49
    • 82255185583 scopus 로고    scopus 로고
    • Nuclear hormone 1alpha,25-dihydroxyvitamin D3 elicits a genome-wide shift in the locations of VDR chromatin occupancy
    • doi: 10.1093/nar/gkr654
    • Heikkinen, S., Vaisanen, S., Pehkonen, P., Seuter, S., Benes, V., and Carlberg, C. (2011). Nuclear hormone 1alpha,25-dihydroxyvitamin D3 elicits a genome-wide shift in the locations of VDR chromatin occupancy. Nucleic Acids Res. 39, 9181-9193. doi: 10.1093/nar/gkr654.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 9181-9193
    • Heikkinen, S.1    Vaisanen, S.2    Pehkonen, P.3    Seuter, S.4    Benes, V.5    Carlberg, C.6
  • 50
    • 0029670477 scopus 로고    scopus 로고
    • Translational control of p27Kip1 accumulation during the cell cycle
    • doi: 10.1126/science.271.5257.1861
    • Hengst, L., and Reed, S. I. (1996). Translational control of p27Kip1 accumulation during the cell cycle. Science 271, 1861-1864. doi: 10.1126/science.271.5257.1861.
    • (1996) Science , vol.271 , pp. 1861-1864
    • Hengst, L.1    Reed, S.I.2
  • 51
    • 0141961566 scopus 로고    scopus 로고
    • Physical and functional interaction between the vitamin D receptor and hairless corepressor, two proteins required for hair cycling
    • doi: 10.1074/jbc.M304886200
    • Hsieh, J. C., Sisk, J. M., Jurutka, P. W., Haussler, C. A., Slater, S. A., Haussler, M. R., et al. (2003). Physical and functional interaction between the vitamin D receptor and hairless corepressor, two proteins required for hair cycling. J. Biol. Chem. 278, 38665-38674. doi: 10.1074/jbc.M304886200.
    • (2003) J. Biol. Chem. , vol.278 , pp. 38665-38674
    • Hsieh, J.C.1    Sisk, J.M.2    Jurutka, P.W.3    Haussler, C.A.4    Slater, S.A.5    Haussler, M.R.6
  • 52
    • 3042728575 scopus 로고    scopus 로고
    • Vitamin D(3) receptor/Sp1 complex is required for the induction of p27(Kip1) expression by vitamin D(3)
    • doi: 10.1038/sj.onc.1207621.
    • Huang, Y. C., Chen, J. Y., and Hung, W. C. (2004). Vitamin D(3) receptor/Sp1 complex is required for the induction of p27(Kip1) expression by vitamin D(3). Oncogene. doi: 10.1038/sj.onc.1207621.
    • (2004) Oncogene
    • Huang, Y.C.1    Chen, J.Y.2    Hung, W.C.3
  • 53
    • 84889610134 scopus 로고    scopus 로고
    • Argonaute 2 sustains the gene expression program driving human monocytic differentiation of acute myeloid leukemia cells
    • e926. doi: 10.1038/cddis.2013.452
    • Iosue, I., Quaranta, R., Masciarelli, S., Fontemaggi, G., Batassa, E. M., Bertolami, C., et al. (2013). Argonaute 2 sustains the gene expression program driving human monocytic differentiation of acute myeloid leukemia cells. Cell Death Dis. 4, e926. doi: 10.1038/cddis.2013.452.
    • (2013) Cell Death Dis. , vol.4
    • Iosue, I.1    Quaranta, R.2    Masciarelli, S.3    Fontemaggi, G.4    Batassa, E.M.5    Bertolami, C.6
  • 54
    • 84887459688 scopus 로고    scopus 로고
    • A nonclassical vitamin D receptor pathway suppresses renal fibrosis
    • doi: 10.1172/JCI67804
    • Ito, I., Waku, T., Aoki, M., Abe, R., Nagai, Y., Watanabe, T., et al. (2013). A nonclassical vitamin D receptor pathway suppresses renal fibrosis. J. Clin. Invest. 123, 4579-4594. doi: 10.1172/JCI67804.
    • (2013) J. Clin. Invest. , vol.123 , pp. 4579-4594
    • Ito, I.1    Waku, T.2    Aoki, M.3    Abe, R.4    Nagai, Y.5    Watanabe, T.6
  • 55
    • 41149101523 scopus 로고    scopus 로고
    • MicroRNAs in the miR-106b family regulate p21/CDKN1A and promote cell cycle progression
    • doi: 10.1128/MCB.01977-07
    • Ivanovska, I., Ball, A. S., Diaz, R. L., Magnus, J. F., Kibukawa, M., Schelter, J. M., et al. (2008). MicroRNAs in the miR-106b family regulate p21/CDKN1A and promote cell cycle progression. Mol. Cell. Biol. 28, 2167-2174. doi: 10.1128/MCB.01977-07.
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 2167-2174
    • Ivanovska, I.1    Ball, A.S.2    Diaz, R.L.3    Magnus, J.F.4    Kibukawa, M.5    Schelter, J.M.6
  • 56
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • doi: 10.1126/science.1063127
    • Jenuwein, T., and Allis, C. D. (2001). Translating the histone code. Science 293, 1074-1080. doi: 10.1126/science.1063127.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 57
    • 0346220267 scopus 로고    scopus 로고
    • G2/M arrest by 1,25-dihydroxyvitamin D3 in ovarian cancer cells mediated through the induction of GADD45 via an exonic enhancer
    • doi: 10.1074/jbc.M308430200
    • Jiang, F., Li, P., Fornace, A. J. Jr., Nicosia, S. V., and Bai, W. (2003). G2/M arrest by 1,25-dihydroxyvitamin D3 in ovarian cancer cells mediated through the induction of GADD45 via an exonic enhancer. J. Biol. Chem. 278, 48030-48040. doi: 10.1074/jbc.M308430200.
    • (2003) J. Biol. Chem. , vol.278 , pp. 48030-48040
    • Jiang, F.1    Li, P.2    Fornace Jr., A.J.3    Nicosia, S.V.4    Bai, W.5
  • 58
    • 84897728220 scopus 로고    scopus 로고
    • LncRNA: a new player in 1alpha, 25(OH)2 vitamin D3/VDR protection against skin cancer formation
    • doi: 10.1111/exd.12341
    • Jiang, Y. J., and Bikle, D. D. (2014). LncRNA: a new player in 1alpha, 25(OH)2 vitamin D3/VDR protection against skin cancer formation. Exp. Dermatol. 23, 147-150. doi: 10.1111/exd.12341.
    • (2014) Exp. Dermatol. , vol.23 , pp. 147-150
    • Jiang, Y.J.1    Bikle, D.D.2
  • 60
    • 84870238817 scopus 로고    scopus 로고
    • Dark matter RNA: existence, function, and controversy
    • doi: 10.3389/fgene.2012.00060
    • Kapranov, P., and St Laurent, G. (2012). Dark matter RNA: existence, function, and controversy. Front. Genet. 3:60. doi: 10.3389/fgene.2012.00060.
    • (2012) Front. Genet. , vol.3 , pp. 60
    • Kapranov, P.1    St Laurent, G.2
  • 61
    • 34547107319 scopus 로고    scopus 로고
    • WNT signaling pathway and stem cell signaling network
    • doi: 10.1158/1078-0432.CCR-06-2316
    • Katoh, M., and Katoh, M. (2007). WNT signaling pathway and stem cell signaling network. Clin. Cancer Res. 13, 4042-4045. doi: 10.1158/1078-0432.CCR-06-2316.
    • (2007) Clin. Cancer Res. , vol.13 , pp. 4042-4045
    • Katoh, M.1    Katoh, M.2
  • 62
    • 4644309396 scopus 로고    scopus 로고
    • Altered SMRT levels disrupt vitamin D3 receptor signalling in prostate cancer cells
    • doi: 10.1038/sj.onc.1207772
    • Khanim, F. L., Gommersall, L. M., Wood, V. H., Smith, K. L., Montalvo, L., O'Neill, L. P., et al. (2004). Altered SMRT levels disrupt vitamin D3 receptor signalling in prostate cancer cells. Oncogene 23, 6712-6725. doi: 10.1038/sj.onc.1207772.
    • (2004) Oncogene , vol.23 , pp. 6712-6725
    • Khanim, F.L.1    Gommersall, L.M.2    Wood, V.H.3    Smith, K.L.4    Montalvo, L.5    O'Neill, L.P.6
  • 63
    • 58849132061 scopus 로고    scopus 로고
    • Involvement of SMRT Corepressor in Transcriptional Repression by the Vitamin D Receptor
    • doi: 10.1210/me.2008-0426
    • Kim, J. Y., Son, Y. L., and Lee, Y. C. (2009). Involvement of SMRT Corepressor in Transcriptional Repression by the Vitamin D Receptor. Mol. Endocrinol. 23, 251-264. doi: 10.1210/me.2008-0426.
    • (2009) Mol. Endocrinol. , vol.23 , pp. 251-264
    • Kim, J.Y.1    Son, Y.L.2    Lee, Y.C.3
  • 64
    • 12544251378 scopus 로고    scopus 로고
    • 1,25-Dihydroxyvitamin D3 stimulates cyclic vitamin D receptor/retinoid X receptor DNA-binding, co-activator recruitment, and histone acetylation in intact osteoblasts
    • doi: 10.1359/JBMR.041112
    • Kim, S., Shevde, N. K., and Pike, J. W. (2005). 1,25-Dihydroxyvitamin D3 stimulates cyclic vitamin D receptor/retinoid X receptor DNA-binding, co-activator recruitment, and histone acetylation in intact osteoblasts. J. Bone Miner. Res. 20, 305-317. doi: 10.1359/JBMR.041112.
    • (2005) J. Bone Miner. Res. , vol.20 , pp. 305-317
    • Kim, S.1    Shevde, N.K.2    Pike, J.W.3
  • 65
    • 0030767288 scopus 로고    scopus 로고
    • 19-nor-hexafluoride analogue of vitamin D3: a novel class of potent inhibitors of proliferation of human breast cell lines
    • Koike, M., Elstner, E., Campbell, M. J., Asou, H., Uskokovic, M., Tsuruoka, N., et al. (1997). 19-nor-hexafluoride analogue of vitamin D3: a novel class of potent inhibitors of proliferation of human breast cell lines. Cancer Res. 57, 4545-4550.
    • (1997) Cancer Res. , vol.57 , pp. 4545-4550
    • Koike, M.1    Elstner, E.2    Campbell, M.J.3    Asou, H.4    Uskokovic, M.5    Tsuruoka, N.6
  • 66
    • 33745516836 scopus 로고    scopus 로고
    • Identification of vitamin D receptor as a target of p63
    • doi: 10.1038/sj.onc.1209412
    • Kommagani, R., Caserta, T. M., and Kadakia, M. P. (2006). Identification of vitamin D receptor as a target of p63. Oncogene 25, 3745-3751. doi: 10.1038/sj.onc.1209412.
    • (2006) Oncogene , vol.25 , pp. 3745-3751
    • Kommagani, R.1    Caserta, T.M.2    Kadakia, M.P.3
  • 67
    • 80053910848 scopus 로고    scopus 로고
    • Dietary vitamin D and vitamin D receptor level modulate epithelial cell proliferation and apoptosis in the prostate
    • doi: 10.1158/1940-6207.CAPR-11-0035
    • Kovalenko, P. L., Zhang, Z., Yu, J. G., Li, Y., Clinton, S. K., and Fleet, J. C. (2011). Dietary vitamin D and vitamin D receptor level modulate epithelial cell proliferation and apoptosis in the prostate. Cancer Prev. Res. (Phila.) 4, 1617-1625. doi: 10.1158/1940-6207.CAPR-11-0035.
    • (2011) Cancer Prev. Res. (Phila.) , vol.4 , pp. 1617-1625
    • Kovalenko, P.L.1    Zhang, Z.2    Yu, J.G.3    Li, Y.4    Clinton, S.K.5    Fleet, J.C.6
  • 68
    • 84945950292 scopus 로고    scopus 로고
    • Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets
    • doi: 10.1186/1471-2164-15-S1-S6
    • Lai, Y., Zhang, F., Nayak, T. K., Modarres, R., Lee, N. H., and McCaffrey, T. A. (2014). Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets. BMC Genomics 15(Suppl. 1), S6. doi: 10.1186/1471-2164-15-S1-S6.
    • (2014) BMC Genomics , vol.15 , Issue.SUPPL. 1
    • Lai, Y.1    Zhang, F.2    Nayak, T.K.3    Modarres, R.4    Lee, N.H.5    McCaffrey, T.A.6
  • 69
    • 33746553766 scopus 로고    scopus 로고
    • Prostate derived factor in human prostate cancer cells: gene induction by vitamin D via a p53-dependent mechanism and inhibition of prostate cancer cell growth
    • doi: 10.1002/jcp.20692
    • Lambert, J. R., Kelly, J. A., Shim, M., Huffer, W. E., Nordeen, S. K., Baek, S. J., et al. (2006). Prostate derived factor in human prostate cancer cells: gene induction by vitamin D via a p53-dependent mechanism and inhibition of prostate cancer cell growth. J. Cell. Physiol. 208, 566-574. doi: 10.1002/jcp.20692.
    • (2006) J. Cell. Physiol. , vol.208 , pp. 566-574
    • Lambert, J.R.1    Kelly, J.A.2    Shim, M.3    Huffer, W.E.4    Nordeen, S.K.5    Baek, S.J.6
  • 70
    • 0037099488 scopus 로고    scopus 로고
    • Cyclin D-cdk4 activity modulates the subnuclear localization and interaction of MEF2 with SRC-family coactivators during skeletal muscle differentiation
    • doi: 10.1101/gad.U-9988R
    • Lazaro, J. B., Bailey, P. J., and Lassar, A. B. (2002). Cyclin D-cdk4 activity modulates the subnuclear localization and interaction of MEF2 with SRC-family coactivators during skeletal muscle differentiation. Genes Dev. 16, 1792-1805. doi: 10.1101/gad.U-9988R.
    • (2002) Genes Dev. , vol.16 , pp. 1792-1805
    • Lazaro, J.B.1    Bailey, P.J.2    Lassar, A.B.3
  • 71
    • 77950443318 scopus 로고    scopus 로고
    • NER factors are recruited to active promoters and facilitate chromatin modification for transcription in the absence of exogenous genotoxic attack
    • doi: 10.1016/j.molcel.2010.03.004
    • Le May, N., Mota-Fernandes, D., Velez-Cruz, R., Iltis, I., Biard, D., and Egly, J. M. (2010). NER factors are recruited to active promoters and facilitate chromatin modification for transcription in the absence of exogenous genotoxic attack. Mol. Cell 38, 54-66. doi: 10.1016/j.molcel.2010.03.004.
    • (2010) Mol. Cell , vol.38 , pp. 54-66
    • Le May, N.1    Mota-Fernandes, D.2    Velez-Cruz, R.3    Iltis, I.4    Biard, D.5    Egly, J.M.6
  • 72
    • 0035947674 scopus 로고    scopus 로고
    • Ski-interacting protein interacts with Smad proteins to augment transforming growth factor-beta-dependent transcription
    • doi: 10.1074/jbc.M010815200
    • Leong, G. M., Subramaniam, N., Figueroa, J., Flanagan, J. L., Hayman, M. J., Eisman, J. A., et al. (2001). Ski-interacting protein interacts with Smad proteins to augment transforming growth factor-beta-dependent transcription. J. Biol. Chem. 276, 18243-18248. doi: 10.1074/jbc.M010815200.
    • (2001) J. Biol. Chem. , vol.276 , pp. 18243-18248
    • Leong, G.M.1    Subramaniam, N.2    Figueroa, J.3    Flanagan, J.L.4    Hayman, M.J.5    Eisman, J.A.6
  • 73
    • 2942588521 scopus 로고    scopus 로고
    • p27(Kip1) stabilization and G(1) arrest by 1,25-dihydroxyvitamin D(3) in ovarian cancer cells mediated through down-regulation of cyclin E/cyclin-dependent kinase 2 and Skp1-Cullin-F-box protein/Skp2 ubiquitin ligase
    • doi: 10.1074/jbc.M311052200
    • Li, P., Li, C., Zhao, X., Zhang, X., Nicosia, S. V., and Bai, W. (2004). p27(Kip1) stabilization and G(1) arrest by 1,25-dihydroxyvitamin D(3) in ovarian cancer cells mediated through down-regulation of cyclin E/cyclin-dependent kinase 2 and Skp1-Cullin-F-box protein/Skp2 ubiquitin ligase. J. Biol. Chem. 279, 25260-25267. doi: 10.1074/jbc.M311052200.
    • (2004) J. Biol. Chem. , vol.279 , pp. 25260-25267
    • Li, P.1    Li, C.2    Zhao, X.3    Zhang, X.4    Nicosia, S.V.5    Bai, W.6
  • 74
    • 85047681364 scopus 로고    scopus 로고
    • Expression profiling in squamous carcinoma cells reveals pleiotropic effects of vitamin D3 analog EB1089 signaling on cell proliferation, differentiation, and immune system regulation
    • doi: 10.1210/mend.16.6.0874
    • Lin, R., Nagai, Y., Sladek, R., Bastien, Y., Ho, J., Petrecca, K., et al. (2002). Expression profiling in squamous carcinoma cells reveals pleiotropic effects of vitamin D3 analog EB1089 signaling on cell proliferation, differentiation, and immune system regulation. Mol. Endocrinol. 16, 1243-1256. doi: 10.1210/mend.16.6.0874.
    • (2002) Mol. Endocrinol. , vol.16 , pp. 1243-1256
    • Lin, R.1    Nagai, Y.2    Sladek, R.3    Bastien, Y.4    Ho, J.5    Petrecca, K.6
  • 75
    • 84887101163 scopus 로고    scopus 로고
    • MicroRNAs and other non-coding RNAs as targets for anticancer drug development
    • doi: 10.1038/nrd4140
    • Ling, H., Fabbri, M., and Calin, G. A. (2013). MicroRNAs and other non-coding RNAs as targets for anticancer drug development. Nat. Rev. Drug Discov. 12, 847-865. doi: 10.1038/nrd4140.
    • (2013) Nat. Rev. Drug Discov. , vol.12 , pp. 847-865
    • Ling, H.1    Fabbri, M.2    Calin, G.A.3
  • 76
    • 79954614306 scopus 로고    scopus 로고
    • Gene targeting by the vitamin D response element binding protein reveals a role for vitamin D in osteoblast mTOR signaling
    • doi: 10.1096/fj.10-172577
    • Lisse, T. S., Liu, T., Irmler, M., Beckers, J., Chen, H., Adams, J. S., et al. (2011). Gene targeting by the vitamin D response element binding protein reveals a role for vitamin D in osteoblast mTOR signaling. FASEB J. 25, 937-947. doi: 10.1096/fj.10-172577.
    • (2011) FASEB J. , vol.25 , pp. 937-947
    • Lisse, T.S.1    Liu, T.2    Irmler, M.3    Beckers, J.4    Chen, H.5    Adams, J.S.6
  • 77
    • 42049095870 scopus 로고    scopus 로고
    • MicroRNA expression profiling using microarrays
    • doi: 10.1038/nprot.2008.14
    • Liu, C. G., Calin, G. A., Volinia, S., and Croce, C. M. (2008). MicroRNA expression profiling using microarrays. Nat. Protoc. 3, 563-578. doi: 10.1038/nprot.2008.14.
    • (2008) Nat. Protoc. , vol.3 , pp. 563-578
    • Liu, C.G.1    Calin, G.A.2    Volinia, S.3    Croce, C.M.4
  • 78
    • 0030065422 scopus 로고    scopus 로고
    • Transcriptional activation of the Cdk inhibitor p21 by vitamin D3 leads to the induced differentiation of the myelomonocytic cell line U937
    • doi: 10.1101/gad.10.2.142
    • Liu, M., Lee, M. H., Cohen, M., Bommakanti, M., and Freedman, L. P. (1996). Transcriptional activation of the Cdk inhibitor p21 by vitamin D3 leads to the induced differentiation of the myelomonocytic cell line U937. Genes Dev. 10, 142-153. doi: 10.1101/gad.10.2.142.
    • (1996) Genes Dev. , vol.10 , pp. 142-153
    • Liu, M.1    Lee, M.H.2    Cohen, M.3    Bommakanti, M.4    Freedman, L.P.5
  • 79
    • 40849085514 scopus 로고    scopus 로고
    • FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
    • doi: 10.1016/j.cell.2008.01.018
    • Lupien, M., Eeckhoute, J., Meyer, C. A., Wang, Q., Zhang, Y., Li, W., et al. (2008). FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 132, 958-970. doi: 10.1016/j.cell.2008.01.018.
    • (2008) Cell , vol.132 , pp. 958-970
    • Lupien, M.1    Eeckhoute, J.2    Meyer, C.A.3    Wang, Q.4    Zhang, Y.5    Li, W.6
  • 80
    • 84863168143 scopus 로고    scopus 로고
    • Advantages of genomic complexity: bioinformatics opportunities in microRNA cancer signatures
    • doi: 10.1136/amiajnl-2011-000419
    • Lussier, Y. A., Stadler, W. M., and Chen, J. L. (2012). Advantages of genomic complexity: bioinformatics opportunities in microRNA cancer signatures. J. Am. Med. Inform. Assoc. 19, 156-160. doi: 10.1136/amiajnl-2011-000419.
    • (2012) J. Am. Med. Inform. Assoc. , vol.19 , pp. 156-160
    • Lussier, Y.A.1    Stadler, W.M.2    Chen, J.L.3
  • 81
    • 0033920259 scopus 로고    scopus 로고
    • A new family of nuclear receptor coregulators that integrate nuclear receptor signaling through CREB-binding protein
    • doi: 10.1128/MCB.20.14.5048-5063.2000
    • Mahajan, M. A., and Samuels, H. H. (2000). A new family of nuclear receptor coregulators that integrate nuclear receptor signaling through CREB-binding protein. Mol. Cell. Biol. 20, 5048-5063. doi: 10.1128/MCB.20.14.5048-5063.2000.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 5048-5063
    • Mahajan, M.A.1    Samuels, H.H.2
  • 82
    • 84867444899 scopus 로고    scopus 로고
    • ENCODE: The human encyclopaedia
    • doi: 10.1038/489046a
    • Maher, B. (2012). ENCODE: The human encyclopaedia. Nature 489, 46-48. doi: 10.1038/489046a.
    • (2012) Nature , vol.489 , pp. 46-48
    • Maher, B.1
  • 83
    • 38349142775 scopus 로고    scopus 로고
    • Distinct HDACs regulate the transcriptional response of human cyclin-dependent kinase inhibitor genes to Trichostatin A and 1alpha,25-dihydroxyvitamin D3
    • doi: 10.1093/nar/gkm913
    • Malinen, M., Saramaki, A., Ropponen, A., Degenhardt, T., Vaisanen, S., and Carlberg, C. (2008). Distinct HDACs regulate the transcriptional response of human cyclin-dependent kinase inhibitor genes to Trichostatin A and 1alpha,25-dihydroxyvitamin D3. Nucleic Acids Res. 36, 121-132. doi: 10.1093/nar/gkm913.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 121-132
    • Malinen, M.1    Saramaki, A.2    Ropponen, A.3    Degenhardt, T.4    Vaisanen, S.5    Carlberg, C.6
  • 84
    • 0142027814 scopus 로고    scopus 로고
    • Structure and function of the feed-forward loop network motif
    • doi: 10.1073/pnas.2133841100
    • Mangan, S., and Alon, U. (2003). Structure and function of the feed-forward loop network motif. Proc. Natl. Acad. Sci. U.S.A. 100, 11980-11985. doi: 10.1073/pnas.2133841100.
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 11980-11985
    • Mangan, S.1    Alon, U.2
  • 85
    • 32044462728 scopus 로고    scopus 로고
    • The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli
    • doi: 10.1016/j.jmb.2005.12.003
    • Mangan, S., Itzkovitz, S., Zaslaver, A., and Alon, U. (2006). The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli. J. Mol. Biol. 356, 1073-1081. doi: 10.1016/j.jmb.2005.12.003.
    • (2006) J. Mol. Biol. , vol.356 , pp. 1073-1081
    • Mangan, S.1    Itzkovitz, S.2    Zaslaver, A.3    Alon, U.4
  • 87
    • 74049142511 scopus 로고    scopus 로고
    • Integrative oncogenomic analysis of microarray data in hematologic malignancies
    • doi: 10.1007/978-1-59745-545-9_13
    • Martinez-Climent, J. A., Fontan, L., Fresquet, V., Robles, E., Ortiz, M., and Rubio, A. (2010). Integrative oncogenomic analysis of microarray data in hematologic malignancies. Methods Mol. Biol. 576, 231-277. doi: 10.1007/978-1-59745-545-9_13.
    • (2010) Methods Mol. Biol. , vol.576 , pp. 231-277
    • Martinez-Climent, J.A.1    Fontan, L.2    Fresquet, V.3    Robles, E.4    Ortiz, M.5    Rubio, A.6
  • 88
    • 33646403420 scopus 로고    scopus 로고
    • Comparative genome analysis identifies the vitamin D receptor gene as a direct target of p53-mediated transcriptional activation
    • doi: 10.1158/0008-5472.CAN-05-2562
    • Maruyama, R., Aoki, F., Toyota, M., Sasaki, Y., Akashi, H., Mita, H., et al. (2006). Comparative genome analysis identifies the vitamin D receptor gene as a direct target of p53-mediated transcriptional activation. Cancer Res. 66, 4574-4583. doi: 10.1158/0008-5472.CAN-05-2562.
    • (2006) Cancer Res. , vol.66 , pp. 4574-4583
    • Maruyama, R.1    Aoki, F.2    Toyota, M.3    Sasaki, Y.4    Akashi, H.5    Mita, H.6
  • 89
    • 40449123137 scopus 로고    scopus 로고
    • Cyclical DNA methylation of a transcriptionally active promoter
    • doi: 10.1038/nature06544
    • Metivier, R., Gallais, R., Tiffoche, C., Le Peron, C., Jurkowska, R. Z., Carmouche, R. P., et al. (2008). Cyclical DNA methylation of a transcriptionally active promoter. Nature 452, 45-50. doi: 10.1038/nature06544.
    • (2008) Nature , vol.452 , pp. 45-50
    • Metivier, R.1    Gallais, R.2    Tiffoche, C.3    Le Peron, C.4    Jurkowska, R.Z.5    Carmouche, R.P.6
  • 90
    • 2642544592 scopus 로고    scopus 로고
    • Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter
    • doi: 10.1016/S0092-8674(03)00934-6
    • Metivier, R., Penot, G., Hubner, M. R., Reid, G., Brand, H., Kos, M., et al. (2003). Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. Cell 115, 751-763. doi: 10.1016/S0092-8674(03)00934-6.
    • (2003) Cell , vol.115 , pp. 751-763
    • Metivier, R.1    Penot, G.2    Hubner, M.R.3    Reid, G.4    Brand, H.5    Kos, M.6
  • 91
    • 84855225831 scopus 로고    scopus 로고
    • VDR/RXR and TCF4/beta-catenin cistromes in colonic cells of colorectal tumor origin: impact on c-FOS and c-MYC gene expression
    • doi: 10.1210/me.2011-1109
    • Meyer, M. B., Goetsch, P. D., and Pike, J. W. (2012). VDR/RXR and TCF4/beta-catenin cistromes in colonic cells of colorectal tumor origin: impact on c-FOS and c-MYC gene expression. Mol. Endocrinol. 26, 37-51. doi: 10.1210/me.2011-1109.
    • (2012) Mol. Endocrinol. , vol.26 , pp. 37-51
    • Meyer, M.B.1    Goetsch, P.D.2    Pike, J.W.3
  • 92
    • 33744464745 scopus 로고    scopus 로고
    • The human transient receptor potential vanilloid type 6 distal promoter contains multiple vitamin D receptor binding sites that mediate activation by 1,25-dihydroxyvitamin D3 in intestinal cells
    • doi: 10.1210/me.2006-0031
    • Meyer, M. B., Watanuki, M., Kim, S., Shevde, N. K., and Pike, J. W. (2006). The human transient receptor potential vanilloid type 6 distal promoter contains multiple vitamin D receptor binding sites that mediate activation by 1,25-dihydroxyvitamin D3 in intestinal cells. Mol. Endocrinol. 20, 1447-1461. doi: 10.1210/me.2006-0031.
    • (2006) Mol. Endocrinol. , vol.20 , pp. 1447-1461
    • Meyer, M.B.1    Watanuki, M.2    Kim, S.3    Shevde, N.K.4    Pike, J.W.5
  • 94
    • 61349117970 scopus 로고    scopus 로고
    • Genetics and epigenetics: stability and plasticity during cellular differentiation
    • doi: 10.1016/j.tig.2008.12.005
    • Mohn, F., and Schubeler, D. (2009). Genetics and epigenetics: stability and plasticity during cellular differentiation. Trends Genet. 25, 129-136. doi: 10.1016/j.tig.2008.12.005.
    • (2009) Trends Genet. , vol.25 , pp. 129-136
    • Mohn, F.1    Schubeler, D.2
  • 95
    • 68249147449 scopus 로고    scopus 로고
    • MicroRNA regulates human vitamin D receptor
    • doi: 10.1002/ijc.24459
    • Mohri, T., Nakajima, M., Takagi, S., Komagata, S., and Yokoi, T. (2009). MicroRNA regulates human vitamin D receptor. Int. J. Cancer 125, 1328-1333. doi: 10.1002/ijc.24459.
    • (2009) Int. J. Cancer , vol.125 , pp. 1328-1333
    • Mohri, T.1    Nakajima, M.2    Takagi, S.3    Komagata, S.4    Yokoi, T.5
  • 96
    • 78651486442 scopus 로고    scopus 로고
    • Densely interconnected transcriptional circuits control cell states in human hematopoiesis
    • doi: 10.1016/j.cell.2011.01.004
    • Novershtern, N., Subramanian, A., Lawton, L. N., Mak, R. H., Haining, W. N., McConkey, M. E., et al. (2011). Densely interconnected transcriptional circuits control cell states in human hematopoiesis. Cell 144, 296-309. doi: 10.1016/j.cell.2011.01.004.
    • (2011) Cell , vol.144 , pp. 296-309
    • Novershtern, N.1    Subramanian, A.2    Lawton, L.N.3    Mak, R.H.4    Haining, W.N.5    McConkey, M.E.6
  • 97
    • 84857183093 scopus 로고    scopus 로고
    • Structure of the full human RXR/VDR nuclear receptor heterodimer complex with its DR3 target DNA
    • doi: 10.1038/emboj.2011.445
    • Orlov, I., Rochel, N., Moras, D., and Klaholz, B. P. (2012). Structure of the full human RXR/VDR nuclear receptor heterodimer complex with its DR3 target DNA. EMBO J. 31, 291-300. doi: 10.1038/emboj.2011.445.
    • (2012) EMBO J. , vol.31 , pp. 291-300
    • Orlov, I.1    Rochel, N.2    Moras, D.3    Klaholz, B.P.4
  • 98
    • 0033968788 scopus 로고    scopus 로고
    • Bacterial artificial chromosome libraries for mouse sequencing and functional analysis
    • Osoegawa, K., Tateno, M., Woon, P. Y., Frengen, E., Mammoser, A. G., Catanese, J. J., et al. (2000). Bacterial artificial chromosome libraries for mouse sequencing and functional analysis. Genome Res. 10, 116-128.
    • (2000) Genome Res. , vol.10 , pp. 116-128
    • Osoegawa, K.1    Tateno, M.2    Woon, P.Y.3    Frengen, E.4    Mammoser, A.G.5    Catanese, J.J.6
  • 99
    • 84880600170 scopus 로고    scopus 로고
    • MicroRNA-627 mediates the epigenetic mechanisms of vitamin D to suppress proliferation of human colorectal cancer cells and growth of xenograft tumors in mice
    • doi: 10.1053/j.gastro.2013.04.012
    • Padi, S. K., Zhang, Q., Rustum, Y. M., Morrison, C., and Guo, B. (2013). MicroRNA-627 mediates the epigenetic mechanisms of vitamin D to suppress proliferation of human colorectal cancer cells and growth of xenograft tumors in mice. Gastroenterology 145, 437-446. doi: 10.1053/j.gastro.2013.04.012.
    • (2013) Gastroenterology , vol.145 , pp. 437-446
    • Padi, S.K.1    Zhang, Q.2    Rustum, Y.M.3    Morrison, C.4    Guo, B.5
  • 100
    • 18344389705 scopus 로고    scopus 로고
    • Vitamin D(3) promotes the differentiation of colon carcinoma cells by the induction of E-cadherin and the inhibition of beta-catenin signaling
    • doi: 10.1083/jcb.200102028
    • Pálmer, H. G., González-Sancho, J. M., Espada, J., Berciano, M. T., Puig, I., Baulida, J., et al. (2001). Vitamin D(3) promotes the differentiation of colon carcinoma cells by the induction of E-cadherin and the inhibition of beta-catenin signaling. J. Cell. Biol. 154, 369-387. doi: 10.1083/jcb.200102028.
    • (2001) J. Cell. Biol. , vol.154 , pp. 369-387
    • Pálmer, H.G.1    González-Sancho, J.M.2    Espada, J.3    Berciano, M.T.4    Puig, I.5    Baulida, J.6
  • 102
    • 33846039701 scopus 로고    scopus 로고
    • ArrayExpress-a public database of microarray experiments and gene expression profiles
    • doi: 10.1093/nar/gkl995
    • Parkinson, H., Kapushesky, M., Shojatalab, M., Abeygunawardena, N., Coulson, R., Farne, A., et al. (2007). ArrayExpress-a public database of microarray experiments and gene expression profiles. Nucleic Acids Res. 35, D747-D750. doi: 10.1093/nar/gkl995.
    • (2007) Nucleic Acids Res. , vol.35
    • Parkinson, H.1    Kapushesky, M.2    Shojatalab, M.3    Abeygunawardena, N.4    Coulson, R.5    Farne, A.6
  • 103
    • 0028047731 scopus 로고
    • Antiproliferative effects of 1,25-dihydroxyvitamin D3 on primary cultures of human prostatic cells
    • Peehl, D. M., Skowronski, R. J., Leung, G. K., Wong, S. T., Stamey, T. A., and Feldman, D. (1994). Antiproliferative effects of 1,25-dihydroxyvitamin D3 on primary cultures of human prostatic cells. Cancer Res. 54, 805-810.
    • (1994) Cancer Res. , vol.54 , pp. 805-810
    • Peehl, D.M.1    Skowronski, R.J.2    Leung, G.K.3    Wong, S.T.4    Stamey, T.A.5    Feldman, D.6
  • 104
    • 77954110711 scopus 로고    scopus 로고
    • The importance of nuclear import in protection of the vitamin D receptor from polyubiquitination and proteasome-mediated degradation
    • doi: 10.1002/jcb.22606
    • Peleg, S., and Nguyen, C. V. (2010). The importance of nuclear import in protection of the vitamin D receptor from polyubiquitination and proteasome-mediated degradation. J. Cell. Biochem. 110, 926-934. doi: 10.1002/jcb.22606.
    • (2010) J. Cell. Biochem. , vol.110 , pp. 926-934
    • Peleg, S.1    Nguyen, C.V.2
  • 105
    • 81255147963 scopus 로고    scopus 로고
    • KDM6B/JMJD3 histone demethylase is induced by vitamin D and modulates its effects in colon cancer cells
    • doi: 10.1093/hmg/ddr399
    • Pereira, F., Barbachano, A., Silva, J., Bonilla, F., Campbell, M. J., Munoz, A., et al. (2011). KDM6B/JMJD3 histone demethylase is induced by vitamin D and modulates its effects in colon cancer cells. Hum. Mol. Genet. 20, 4655-4665. doi: 10.1093/hmg/ddr399.
    • (2011) Hum. Mol. Genet. , vol.20 , pp. 4655-4665
    • Pereira, F.1    Barbachano, A.2    Silva, J.3    Bonilla, F.4    Campbell, M.J.5    Munoz, A.6
  • 106
    • 84897883825 scopus 로고    scopus 로고
    • Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs
    • doi: 10.1002/embj.201385895
    • Pihlajamaa, P., Sahu, B., Lyly, L., Aittomaki, V., Hautaniemi, S., and Janne, O. A. (2014). Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. EMBO J. 33, 312-326. doi: 10.1002/embj.201385895.
    • (2014) EMBO J. , vol.33 , pp. 312-326
    • Pihlajamaa, P.1    Sahu, B.2    Lyly, L.3    Aittomaki, V.4    Hautaniemi, S.5    Janne, O.A.6
  • 107
    • 0018850828 scopus 로고
    • Biochemical evidence for 1,25-dihydroxyvitamin D receptor macromolecules in parathyroid, pancreatic, pituitary, and placental tissues
    • doi: 10.1016/0024-3205(80)90158-7
    • Pike, J. W., Gooze, L. L., and Haussler, M. R. (1980). Biochemical evidence for 1,25-dihydroxyvitamin D receptor macromolecules in parathyroid, pancreatic, pituitary, and placental tissues. Life Sci. 26, 407-414. doi: 10.1016/0024-3205(80)90158-7.
    • (1980) Life Sci. , vol.26 , pp. 407-414
    • Pike, J.W.1    Gooze, L.L.2    Haussler, M.R.3
  • 108
    • 0033918407 scopus 로고    scopus 로고
    • VDR-Alien: a novel, DNA-selective vitamin D(3) receptor-corepressor partnership
    • doi: 10.1096/fj.14.10.1455
    • Polly, P., Herdick, M., Moehren, U., Baniahmad, A., Heinzel, T., and Carlberg, C. (2000). VDR-Alien: a novel, DNA-selective vitamin D(3) receptor-corepressor partnership. FASEB J. 14, 1455-1463. doi: 10.1096/fj.14.10.1455.
    • (2000) FASEB J. , vol.14 , pp. 1455-1463
    • Polly, P.1    Herdick, M.2    Moehren, U.3    Baniahmad, A.4    Heinzel, T.5    Carlberg, C.6
  • 109
    • 0033966756 scopus 로고    scopus 로고
    • The impact of functional vitamin D(3) receptor conformations on DNA-dependent vitamin D(3) signaling
    • Quack, M., and Carlberg, C. (2000). The impact of functional vitamin D(3) receptor conformations on DNA-dependent vitamin D(3) signaling. Mol. Pharmacol. 57, 375-384.
    • (2000) Mol. Pharmacol. , vol.57 , pp. 375-384
    • Quack, M.1    Carlberg, C.2
  • 111
    • 77956885532 scopus 로고    scopus 로고
    • A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution
    • doi: 10.1101/gr.107920.110
    • Ramagopalan, S. V., Heger, A., Berlanga, A. J., Maugeri, N. J., Lincoln, M. R., Burrell, A., et al. (2010). A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution. Genome Res. 20, 1352-1360. doi: 10.1101/gr.107920.110.
    • (2010) Genome Res. , vol.20 , pp. 1352-1360
    • Ramagopalan, S.V.1    Heger, A.2    Berlanga, A.J.3    Maugeri, N.J.4    Lincoln, M.R.5    Burrell, A.6
  • 112
    • 78149435241 scopus 로고    scopus 로고
    • Integrative functional genomics analysis of sustained polyploidy phenotypes in breast cancer cells identifies an oncogenic profile for GINS2
    • Rantala, J. K., Edgren, H., Lehtinen, L., Wolf, M., Kleivi, K., Vollan, H. K., et al. (2010). Integrative functional genomics analysis of sustained polyploidy phenotypes in breast cancer cells identifies an oncogenic profile for GINS2. Neoplasia 12, 877-888.
    • (2010) Neoplasia , vol.12 , pp. 877-888
    • Rantala, J.K.1    Edgren, H.2    Lehtinen, L.3    Wolf, M.4    Kleivi, K.5    Vollan, H.K.6
  • 113
    • 0035810045 scopus 로고    scopus 로고
    • Synergistic growth inhibition of prostate cancer cells by 1 alpha,25 Dihydroxyvitamin D(3) and its 19-nor-hexafluoride analogs in combination with either sodium butyrate or trichostatin A
    • doi: 10.1038/sj.onc.1204269
    • Rashid, S. F., Moore, J. S., Walker, E., Driver, P. M., Engel, J., Edwards, C. E., et al. (2001). Synergistic growth inhibition of prostate cancer cells by 1 alpha,25 Dihydroxyvitamin D(3) and its 19-nor-hexafluoride analogs in combination with either sodium butyrate or trichostatin A. Oncogene 20, 1860-1872. doi: 10.1038/sj.onc.1204269.
    • (2001) Oncogene , vol.20 , pp. 1860-1872
    • Rashid, S.F.1    Moore, J.S.2    Walker, E.3    Driver, P.M.4    Engel, J.5    Edwards, C.E.6
  • 114
    • 0037351881 scopus 로고    scopus 로고
    • Cyclic, proteasome-mediated turnover of unliganded and liganded ERalpha on responsive promoters is an integral feature of estrogen signaling
    • doi: 10.1016/S1097-2765(03)00090-X
    • Reid, G., Hubner, M. R., Metivier, R., Brand, H., Denger, S., Manu, D., et al. (2003). Cyclic, proteasome-mediated turnover of unliganded and liganded ERalpha on responsive promoters is an integral feature of estrogen signaling. Mol. Cell 11, 695-707. doi: 10.1016/S1097-2765(03)00090-X.
    • (2003) Mol. Cell , vol.11 , pp. 695-707
    • Reid, G.1    Hubner, M.R.2    Metivier, R.3    Brand, H.4    Denger, S.5    Manu, D.6
  • 115
    • 70349750196 scopus 로고    scopus 로고
    • miR-21: an androgen receptor-regulated microRNA that promotes hormone-dependent and hormone-independent prostate cancer growth
    • doi: 10.1158/0008-5472.CAN-09-1448
    • Ribas, J., Ni, X., Haffner, M., Wentzel, E. A., Salmasi, A. H., Chowdhury, W. H., et al. (2009). miR-21: an androgen receptor-regulated microRNA that promotes hormone-dependent and hormone-independent prostate cancer growth. Cancer Res. 69, 7165-7169. doi: 10.1158/0008-5472.CAN-09-1448.
    • (2009) Cancer Res. , vol.69 , pp. 7165-7169
    • Ribas, J.1    Ni, X.2    Haffner, M.3    Wentzel, E.A.4    Salmasi, A.H.5    Chowdhury, W.H.6
  • 116
    • 84874062746 scopus 로고    scopus 로고
    • Deciphering the calcitriol-induced transcriptomic response in keratinocytes: presentation of novel target genes
    • doi: 10.1530/JME-11-0191
    • Rid, R., Wagner, M., Maier, C. J., Hundsberger, H., Hintner, H., Bauer, J. W., et al. (2013). Deciphering the calcitriol-induced transcriptomic response in keratinocytes: presentation of novel target genes. J. Mol. Endocrinol. 50, 131-149. doi: 10.1530/JME-11-0191.
    • (2013) J. Mol. Endocrinol. , vol.50 , pp. 131-149
    • Rid, R.1    Wagner, M.2    Maier, C.J.3    Hundsberger, H.4    Hintner, H.5    Bauer, J.W.6
  • 118
    • 84874918445 scopus 로고    scopus 로고
    • FoxA1 specifies unique androgen and glucocorticoid receptor binding events in prostate cancer cells
    • doi: 10.1158/0008-5472.CAN-12-2350
    • Sahu, B., Laakso, M., Pihlajamaa, P., Ovaska, K., Sinielnikov, I., Hautaniemi, S., et al. (2013). FoxA1 specifies unique androgen and glucocorticoid receptor binding events in prostate cancer cells. Cancer Res. 73, 1570-1580. doi: 10.1158/0008-5472.CAN-12-2350.
    • (2013) Cancer Res. , vol.73 , pp. 1570-1580
    • Sahu, B.1    Laakso, M.2    Pihlajamaa, P.3    Ovaska, K.4    Sinielnikov, I.5    Hautaniemi, S.6
  • 119
    • 32644451972 scopus 로고    scopus 로고
    • Regulation of the human p21(waf1/cip1) gene promoter via multiple binding sites for p53 and the vitamin D3 receptor
    • doi: 10.1093/nar/gkj460
    • Saramaki, A., Banwell, C. M., Campbell, M. J., and Carlberg, C. (2006). Regulation of the human p21(waf1/cip1) gene promoter via multiple binding sites for p53 and the vitamin D3 receptor. Nucleic Acids Res. 34, 543-554. doi: 10.1093/nar/gkj460.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 543-554
    • Saramaki, A.1    Banwell, C.M.2    Campbell, M.J.3    Carlberg, C.4
  • 120
    • 65549121213 scopus 로고    scopus 로고
    • Cyclical chromatin looping and transcription factor association on the regulatory regions of the p21 (CDKN1A) gene in response to 1alpha,25-dihydroxyvitamin D3
    • doi: 10.1074/jbc.M808090200
    • Saramaki, A., Diermeier, S., Kellner, R., Laitinen, H., Vaisanen, S., and Carlberg, C. (2009). Cyclical chromatin looping and transcription factor association on the regulatory regions of the p21 (CDKN1A) gene in response to 1alpha,25-dihydroxyvitamin D3. J. Biol. Chem. 284, 8073-8082. doi: 10.1074/jbc.M808090200.
    • (2009) J. Biol. Chem. , vol.284 , pp. 8073-8082
    • Saramaki, A.1    Diermeier, S.2    Kellner, R.3    Laitinen, H.4    Vaisanen, S.5    Carlberg, C.6
  • 121
    • 27644594719 scopus 로고    scopus 로고
    • Cyclin D3 promotes adipogenesis through activation of peroxisome proliferator-activated receptor gamma
    • doi: 10.1128/MCB.25.22.9985-9995.2005
    • Sarruf, D. A., Iankova, I., Abella, A., Assou, S., Miard, S., and Fajas, L. (2005). Cyclin D3 promotes adipogenesis through activation of peroxisome proliferator-activated receptor gamma. Mol. Cell Biol. 25, 9985-9995. doi: 10.1128/MCB.25.22.9985-9995.2005.
    • (2005) Mol. Cell Biol. , vol.25 , pp. 9985-9995
    • Sarruf, D.A.1    Iankova, I.2    Abella, A.3    Assou, S.4    Miard, S.5    Fajas, L.6
  • 122
    • 0036046405 scopus 로고    scopus 로고
    • Gene expression analysis of 1,25(OH)2D3-dependent differentiation of HL-60 cells: a cDNA array study
    • doi: 10.1046/j.1365-2141.2002.03734.x
    • Savli, H., Aalto, Y., Nagy, B., Knuutila, S., and Pakkala, S. (2002). Gene expression analysis of 1,25(OH)2D3-dependent differentiation of HL-60 cells: a cDNA array study. Br. J. Haematol. 118, 1065-1070. doi: 10.1046/j.1365-2141.2002.03734.x.
    • (2002) Br. J. Haematol. , vol.118 , pp. 1065-1070
    • Savli, H.1    Aalto, Y.2    Nagy, B.3    Knuutila, S.4    Pakkala, S.5
  • 123
    • 0028939009 scopus 로고
    • Posttranscriptional stabilization underlies p53-independent induction of p21WAF1/CIP1/SDI1 in differentiating human leukemic cells
    • doi: 10.1172/JCI117806
    • Schwaller, J., Koeffler, H. P., Niklaus, G., Loetscher, P., Nagel, S., Fey, M. F., et al. (1995). Posttranscriptional stabilization underlies p53-independent induction of p21WAF1/CIP1/SDI1 in differentiating human leukemic cells. J. Clin. Invest. 95, 973-979. doi: 10.1172/JCI117806.
    • (1995) J. Clin. Invest. , vol.95 , pp. 973-979
    • Schwaller, J.1    Koeffler, H.P.2    Niklaus, G.3    Loetscher, P.4    Nagel, S.5    Fey, M.F.6
  • 124
    • 17644406393 scopus 로고    scopus 로고
    • The repressor DREAM acts as a transcriptional activator on Vitamin D and retinoic acid response elements
    • doi: 10.1093/nar/gki503
    • Scsucova, S., Palacios, D., Savignac, M., Mellstrom, B., Naranjo, J. R., and Aranda, A. (2005). The repressor DREAM acts as a transcriptional activator on Vitamin D and retinoic acid response elements. Nucleic Acids Res. 33, 2269-2279. doi: 10.1093/nar/gki503.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2269-2279
    • Scsucova, S.1    Palacios, D.2    Savignac, M.3    Mellstrom, B.4    Naranjo, J.R.5    Aranda, A.6
  • 125
    • 33845481284 scopus 로고    scopus 로고
    • Xenobiotic-and vitamin D-responsive induction of the steroid/bile acid-sulfotransferase Sult2A1 in young and old mice: the role of a gene enhancer in the liver chromatin
    • doi: 10.1016/j.gene.2006.10.006
    • Seo, Y. K., Chung, Y. T., Kim, S., Echchgadda, I., Song, C. S., and Chatterjee, B. (2007). Xenobiotic-and vitamin D-responsive induction of the steroid/bile acid-sulfotransferase Sult2A1 in young and old mice: the role of a gene enhancer in the liver chromatin. Gene 386, 218-223. doi: 10.1016/j.gene.2006.10.006.
    • (2007) Gene , vol.386 , pp. 218-223
    • Seo, Y.K.1    Chung, Y.T.2    Kim, S.3    Echchgadda, I.4    Song, C.S.5    Chatterjee, B.6
  • 126
    • 79953319002 scopus 로고    scopus 로고
    • Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
    • doi: 10.1101/gr.111534.110
    • Serandour, A. A., Avner, S., Percevault, F., Demay, F., Bizot, M., Lucchetti-Miganeh, C., et al. (2011). Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers. Genome Res. 21, 555-565. doi: 10.1101/gr.111534.110.
    • (2011) Genome Res. , vol.21 , pp. 555-565
    • Serandour, A.A.1    Avner, S.2    Percevault, F.3    Demay, F.4    Bizot, M.5    Lucchetti-Miganeh, C.6
  • 127
    • 63049123830 scopus 로고    scopus 로고
    • Ontology-driven indexing of public datasets for translational bioinformatics
    • doi: 10.1186/1471-2105-10-S2-S1
    • Shah, N. H., Jonquet, C., Chiang, A. P., Butte, A. J., Chen, R., and Musen, M. A. (2009). Ontology-driven indexing of public datasets for translational bioinformatics. BMC Bioinform. 10 (Suppl. 2), S1. doi: 10.1186/1471-2105-10-S2-S1.
    • (2009) BMC Bioinform. , vol.10 , Issue.SUPPL. 2
    • Shah, N.H.1    Jonquet, C.2    Chiang, A.P.3    Butte, A.J.4    Chen, R.5    Musen, M.A.6
  • 128
    • 79551638238 scopus 로고    scopus 로고
    • Vitamin D insufficiency and prognosis in chronic lymphocytic leukemia
    • doi: 10.1182/blood-2010-07-295683
    • Shanafelt, T. D., Drake, M. T., Maurer, M. J., Allmer, C., Rabe, K. G., and Slager, S. L., et al. (2011). Vitamin D insufficiency and prognosis in chronic lymphocytic leukemia. Blood 117, 1492-1498. doi: 10.1182/blood-2010-07-295683.
    • (2011) Blood , vol.117 , pp. 1492-1498
    • Shanafelt, T.D.1    Drake, M.T.2    Maurer, M.J.3    Allmer, C.4    Rabe, K.G.5    Slager, S.L.6
  • 129
    • 79951529658 scopus 로고    scopus 로고
    • miR-125b promotes growth of prostate cancer xenograft tumor through targeting pro-apoptotic genes
    • doi: 10.1002/pros.21270
    • Shi, X. B., Xue, L., Ma, A. H., Tepper, C. G., Kung, H. J., and White, R. W. (2011). miR-125b promotes growth of prostate cancer xenograft tumor through targeting pro-apoptotic genes. Prostate 71, 538-549. doi: 10.1002/pros.21270.
    • (2011) Prostate , vol.71 , pp. 538-549
    • Shi, X.B.1    Xue, L.2    Ma, A.H.3    Tepper, C.G.4    Kung, H.J.5    White, R.W.6
  • 130
    • 84896807570 scopus 로고    scopus 로고
    • Serum microRNA expression patterns that predict early treatment failure in prostate cancer patients
    • Singh, P. K., Preus, L., Hu, Q., Yan, L., Long, M. D., Morrison, C. D., et al. (2014). Serum microRNA expression patterns that predict early treatment failure in prostate cancer patients. Oncotarget 5, 824-840.
    • (2014) Oncotarget , vol.5 , pp. 824-840
    • Singh, P.K.1    Preus, L.2    Hu, Q.3    Yan, L.4    Long, M.D.5    Morrison, C.D.6
  • 131
    • 54549105517 scopus 로고    scopus 로고
    • Transcriptional mechanism for the paired miR-433 and miR-127 genes by nuclear receptors SHP and ERRgamma
    • doi: 10.1093/nar/gkn567
    • Song, G., and Wang, L. (2008). Transcriptional mechanism for the paired miR-433 and miR-127 genes by nuclear receptors SHP and ERRgamma. Nucleic Acids Res. 36, 5727-5735. doi: 10.1093/nar/gkn567.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 5727-5735
    • Song, G.1    Wang, L.2
  • 132
    • 84865859048 scopus 로고    scopus 로고
    • What does our genome encode?
    • doi: 10.1101/gr.146506.112
    • Stamatoyannopoulos, J. A. (2012). What does our genome encode? Genome Res. 22, 1602-1611. doi: 10.1101/gr.146506.112.
    • (2012) Genome Res. , vol.22 , pp. 1602-1611
    • Stamatoyannopoulos, J.A.1
  • 133
    • 77649298024 scopus 로고    scopus 로고
    • Modulation of the vitamin D3 response by cancer-associated mutant p53
    • doi: 10.1016/j.ccr.2009.11.025
    • Stambolsky, P., Tabach, Y., Fontemaggi, G., Weisz, L., Maor-Aloni, R., Siegfried, Z., et al. (2010). Modulation of the vitamin D3 response by cancer-associated mutant p53. Cancer Cell 17, 273-285. doi: 10.1016/j.ccr.2009.11.025.
    • (2010) Cancer Cell , vol.17 , pp. 273-285
    • Stambolsky, P.1    Tabach, Y.2    Fontemaggi, G.3    Weisz, L.4    Maor-Aloni, R.5    Siegfried, Z.6
  • 134
    • 0036427359 scopus 로고    scopus 로고
    • The cancer genome anatomy project: online resources to reveal the molecular signatures of cancer
    • doi: 10.1081/CNV-120005922
    • Strausberg, R. L., Buetow, K. H., Greenhut, S. F., Grouse, L. H., and Schaefer, C. F. (2002). The cancer genome anatomy project: online resources to reveal the molecular signatures of cancer. Cancer Invest. 20, 1038-1050. doi: 10.1081/CNV-120005922.
    • (2002) Cancer Invest. , vol.20 , pp. 1038-1050
    • Strausberg, R.L.1    Buetow, K.H.2    Greenhut, S.F.3    Grouse, L.H.4    Schaefer, C.F.5
  • 135
    • 66049148777 scopus 로고    scopus 로고
    • The role of microRNA-221 and microRNA-222 in androgen-independent prostate cancer cell lines
    • doi: 10.1158/0008-5472.CAN-08-4112
    • Sun, T., Wang, Q., Balk, S., Brown, M., Lee, G. S., and Kantoff, P. (2009). The role of microRNA-221 and microRNA-222 in androgen-independent prostate cancer cell lines. Cancer Res. 69, 3356-3363. doi: 10.1158/0008-5472.CAN-08-4112.
    • (2009) Cancer Res. , vol.69 , pp. 3356-3363
    • Sun, T.1    Wang, Q.2    Balk, S.3    Brown, M.4    Lee, G.S.5    Kantoff, P.6
  • 136
    • 78049342781 scopus 로고    scopus 로고
    • Research resource: transcriptome profiling of genes regulated by RXR and its permissive and nonpermissive partners in differentiating monocyte-derived dendritic cells
    • doi: 10.1210/me.2010-0215
    • Szeles, L., Poliska, S., Nagy, G., Szatmari, I., Szanto, A., Pap, A., et al. (2010). Research resource: transcriptome profiling of genes regulated by RXR and its permissive and nonpermissive partners in differentiating monocyte-derived dendritic cells. Mol. Endocrinol. 24, 2218-2231. doi: 10.1210/me.2010-0215.
    • (2010) Mol. Endocrinol. , vol.24 , pp. 2218-2231
    • Szeles, L.1    Poliska, S.2    Nagy, G.3    Szatmari, I.4    Szanto, A.5    Pap, A.6
  • 137
    • 0032545486 scopus 로고    scopus 로고
    • The interaction of the vitamin D receptor with nuclear receptor corepressors and coactivators
    • doi: 10.1006/bbrc.1998.9799
    • Tagami, T., Lutz, W. H., Kumar, R., and Jameson, J. L. (1998). The interaction of the vitamin D receptor with nuclear receptor corepressors and coactivators. Biochem. Biophys. Res. Commun. 253, 358-363. doi: 10.1006/bbrc.1998.9799.
    • (1998) Biochem. Biophys. Res. Commun. , vol.253 , pp. 358-363
    • Tagami, T.1    Lutz, W.H.2    Kumar, R.3    Jameson, J.L.4
  • 138
    • 33750064270 scopus 로고    scopus 로고
    • Identification of a molecular signature predictive of sensitivity to differentiation induction in acute myeloid leukemia
    • doi: 10.1038/sj.leu.2404358
    • Tagliafico, E., Tenedini, E., Manfredini, R., Grande, A., Ferrari, F., Roncaglia, E., et al. (2006). Identification of a molecular signature predictive of sensitivity to differentiation induction in acute myeloid leukemia. Leukemia 20, 1751-1758. doi: 10.1038/sj.leu.2404358.
    • (2006) Leukemia , vol.20 , pp. 1751-1758
    • Tagliafico, E.1    Tenedini, E.2    Manfredini, R.3    Grande, A.4    Ferrari, F.5    Roncaglia, E.6
  • 139
    • 45449093192 scopus 로고    scopus 로고
    • MicroRNA signatures of tumor-derived exosomes as diagnostic biomarkers of ovarian cancer
    • doi: 10.1016/j.ygyno.2008.04.033
    • Taylor, D. D., and Gercel-Taylor, C. (2008). MicroRNA signatures of tumor-derived exosomes as diagnostic biomarkers of ovarian cancer. Gynecol. Oncol. 110, 13-21. doi: 10.1016/j.ygyno.2008.04.033.
    • (2008) Gynecol. Oncol. , vol.110 , pp. 13-21
    • Taylor, D.D.1    Gercel-Taylor, C.2
  • 140
    • 79953684295 scopus 로고    scopus 로고
    • Epigenetic control of a VDR-governed feed-forward loop that regulates p21(waf1/cip1) expression and function in non-malignant prostate cells
    • doi: 10.1093/nar/gkq875
    • Thorne, J. L., Maguire, O., Doig, C. L., Battaglia, S., Fehr, L., Sucheston, L. E., et al. (2011). Epigenetic control of a VDR-governed feed-forward loop that regulates p21(waf1/cip1) expression and function in non-malignant prostate cells. Nucleic Acids Res. 39, 2045-2056. doi: 10.1093/nar/gkq875.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 2045-2056
    • Thorne, J.L.1    Maguire, O.2    Doig, C.L.3    Battaglia, S.4    Fehr, L.5    Sucheston, L.E.6
  • 141
    • 84872074745 scopus 로고    scopus 로고
    • Identification of microRNA-98 as a therapeutic target inhibiting prostate cancer growth and a biomarker induced by vitamin D
    • doi: 10.1074/jbc.M112.395947
    • Ting, H. J., Messing, J., Yasmin-Karim, S., and Lee, Y. F. (2013). Identification of microRNA-98 as a therapeutic target inhibiting prostate cancer growth and a biomarker induced by vitamin D. J. Biol. Chem. 288, 1-9. doi: 10.1074/jbc.M112.395947.
    • (2013) J. Biol. Chem. , vol.288 , pp. 1-9
    • Ting, H.J.1    Messing, J.2    Yasmin-Karim, S.3    Lee, Y.F.4
  • 142
    • 34247168630 scopus 로고    scopus 로고
    • Identification of VDR-responsive gene signatures in breast cancer cells
    • doi: 10.1159/000100989
    • Towsend, K., Trevino, V., Falciani, F., Stewart, P. M., Hewison, M., and Campbell, M. J. (2006). Identification of VDR-responsive gene signatures in breast cancer cells. Oncology 71, 111-123. doi: 10.1159/000100989.
    • (2006) Oncology , vol.71 , pp. 111-123
    • Towsend, K.1    Trevino, V.2    Falciani, F.3    Stewart, P.M.4    Hewison, M.5    Campbell, M.J.6
  • 143
    • 34248368920 scopus 로고    scopus 로고
    • The implications of alternative splicing in the ENCODE protein complement
    • doi: 10.1073/pnas.0700800104
    • Tress, M. L., Martelli, P. L., Frankish, A., Reeves, G. A., Wesselink, J. J., Yeats, C., et al. (2007). The implications of alternative splicing in the ENCODE protein complement. Proc. Natl. Acad. Sci. U.S.A. 104, 5495-5500. doi: 10.1073/pnas.0700800104.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 5495-5500
    • Tress, M.L.1    Martelli, P.L.2    Frankish, A.3    Reeves, G.A.4    Wesselink, J.J.5    Yeats, C.6
  • 144
    • 0027525056 scopus 로고
    • Decoding the nucleosome
    • doi: 10.1016/0092-8674(93)90673-E
    • Turner, B. M. (1993). Decoding the nucleosome. Cell 75, 5-8. doi: 10.1016/0092-8674(93)90673-E.
    • (1993) Cell , vol.75 , pp. 5-8
    • Turner, B.M.1
  • 145
    • 0031963718 scopus 로고    scopus 로고
    • Histone acetylation as an epigenetic determinant of long-term transcriptional competence
    • doi: 10.1007/s000180050122
    • Turner, B. M. (1998). Histone acetylation as an epigenetic determinant of long-term transcriptional competence. Cell Mol. Life Sci. 54, 21-31. doi: 10.1007/s000180050122.
    • (1998) Cell Mol. Life Sci. , vol.54 , pp. 21-31
    • Turner, B.M.1
  • 146
    • 0036850325 scopus 로고    scopus 로고
    • Cellular memory and the histone code
    • doi: 10.1016/S0092-8674(02)01080-2
    • Turner, B. M. (2002). Cellular memory and the histone code. Cell 111, 285-291. doi: 10.1016/S0092-8674(02)01080-2.
    • (2002) Cell , vol.111 , pp. 285-291
    • Turner, B.M.1
  • 147
    • 20444377304 scopus 로고    scopus 로고
    • Spatio-temporal activation of chromatin on the human CYP24 gene promoter in the presence of 1alpha,25-Dihydroxyvitamin D3
    • doi: 10.1016/j.jmb.2005.04.057
    • Vaisanen, S., Dunlop, T. W., Sinkkonen, L., Frank, C., and Carlberg, C. (2005). Spatio-temporal activation of chromatin on the human CYP24 gene promoter in the presence of 1alpha,25-Dihydroxyvitamin D3. J. Mol. Biol. 350, 65-77. doi: 10.1016/j.jmb.2005.04.057.
    • (2005) J. Mol. Biol. , vol.350 , pp. 65-77
    • Vaisanen, S.1    Dunlop, T.W.2    Sinkkonen, L.3    Frank, C.4    Carlberg, C.5
  • 148
    • 34249302620 scopus 로고    scopus 로고
    • Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells
    • doi: 10.1038/ncb1596
    • Valadi, H., Ekstrom, K., Bossios, A., Sjostrand, M., Lee, J. J., and Lotvall, J. O. (2007). Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat. Cell Biol. 9, 654-659. doi: 10.1038/ncb1596.
    • (2007) Nat. Cell Biol. , vol.9 , pp. 654-659
    • Valadi, H.1    Ekstrom, K.2    Bossios, A.3    Sjostrand, M.4    Lee, J.J.5    Lotvall, J.O.6
  • 149
    • 84876970779 scopus 로고    scopus 로고
    • The protein interaction landscape of the human CMGC kinase group
    • doi: 10.1016/j.celrep.2013.03.027
    • Varjosalo, M., Keskitalo, S., Van Drogen, A., Nurkkala, H., Vichalkovski, A., Aebersold, R., et al. (2013). The protein interaction landscape of the human CMGC kinase group. Cell Rep. 3, 1306-1320. doi: 10.1016/j.celrep.2013.03.027.
    • (2013) Cell Rep. , vol.3 , pp. 1306-1320
    • Varjosalo, M.1    Keskitalo, S.2    Van Drogen, A.3    Nurkkala, H.4    Vichalkovski, A.5    Aebersold, R.6
  • 150
    • 84887111466 scopus 로고    scopus 로고
    • Transcriptional/epigenetic regulator CBP/p300 in tumorigenesis: structural and functional versatility in target recognition
    • doi: 10.1007/s00018-012-1254-4
    • Wang, F., Marshall, C. B., and Ikura, M. (2013a). Transcriptional/epigenetic regulator CBP/p300 in tumorigenesis: structural and functional versatility in target recognition. Cell. Mol. Life Sci. 70, 3989-4008. doi: 10.1007/s00018-012-1254-4.
    • (2013) Cell. Mol. Life Sci. , vol.70 , pp. 3989-4008
    • Wang, F.1    Marshall, C.B.2    Ikura, M.3
  • 151
    • 80054083642 scopus 로고    scopus 로고
    • Toward an understanding of the protein interaction network of the human liver
    • doi: 10.1038/msb.2011.67
    • Wang, J., Huo, K., Ma, L., Tang, L., Li, D., Huang, X., et al. (2011a). Toward an understanding of the protein interaction network of the human liver. Mol. Syst. Biol. 7, 536. doi: 10.1038/msb.2011.67.
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 536
    • Wang, J.1    Huo, K.2    Ma, L.3    Tang, L.4    Li, D.5    Huang, X.6
  • 152
    • 0001208875 scopus 로고    scopus 로고
    • Cyclin-dependent kinase inhibitor p27 as a mediator of the G1-S phase block induced by 1,25-dihydroxyvitamin D3 in HL60 cells
    • Wang, Q. M., Jones, J. B., and Studzinski, G. P. (1996). Cyclin-dependent kinase inhibitor p27 as a mediator of the G1-S phase block induced by 1,25-dihydroxyvitamin D3 in HL60 cells. Cancer Res. 56, 264-267.
    • (1996) Cancer Res. , vol.56 , pp. 264-267
    • Wang, Q.M.1    Jones, J.B.2    Studzinski, G.P.3
  • 153
    • 27644595302 scopus 로고    scopus 로고
    • Large-scale in silico and microarray-based identification of direct 1,25-dihydroxyvitamin D3 target genes
    • doi: 10.1210/me.2005-0106
    • Wang, T. T., Tavera-Mendoza, L. E., Laperriere, D., Libby, E., MacLeod, N. B., Nagai, Y., et al. (2005). Large-scale in silico and microarray-based identification of direct 1,25-dihydroxyvitamin D3 target genes. Mol. Endocrinol. 19, 2685-2695. doi: 10.1210/me.2005-0106.
    • (2005) Mol. Endocrinol. , vol.19 , pp. 2685-2695
    • Wang, T.T.1    Tavera-Mendoza, L.E.2    Laperriere, D.3    Libby, E.4    MacLeod, N.B.5    Nagai, Y.6
  • 154
    • 79955979276 scopus 로고    scopus 로고
    • Effects of 1alpha,25 dihydroxyvitamin D3 and testosterone on miRNA and mRNA expression in LNCaP cells
    • doi: 10.1186/1476-4598-10-58
    • Wang, W. L., Chatterjee, N., Chittur, S. V., Welsh, J., and Tenniswood, M. P. (2011b). Effects of 1alpha,25 dihydroxyvitamin D3 and testosterone on miRNA and mRNA expression in LNCaP cells. Mol. Cancer 10:58. doi: 10.1186/1476-4598-10-58.
    • (2011) Mol. Cancer , vol.10 , pp. 58
    • Wang, W.L.1    Chatterjee, N.2    Chittur, S.V.3    Welsh, J.4    Tenniswood, M.P.5
  • 155
    • 84881139702 scopus 로고    scopus 로고
    • 1,25-Dihydroxyvitamin D3 modulates lipid metabolism in prostate cancer cells through miRNA mediated regulation of PPARA
    • doi: 10.1016/j.jsbmb.2012.09.033
    • Wang, W. L., Welsh, J., and Tenniswood, M. (2013b). 1,25-Dihydroxyvitamin D3 modulates lipid metabolism in prostate cancer cells through miRNA mediated regulation of PPARA. J. Steroid Biochem. Mol. Biol. 136, 247-251. doi: 10.1016/j.jsbmb.2012.09.033.
    • (2013) J. Steroid Biochem. Mol. Biol. , vol.136 , pp. 247-251
    • Wang, W.L.1    Welsh, J.2    Tenniswood, M.3
  • 156
    • 62449121929 scopus 로고    scopus 로고
    • MicroRNAs181 regulate the expression of p27(Kip1) in human myeloid leukemia cells induced to differentiate by 1,25-dihydroxyvitamin D(3)
    • doi: 10.4161/cc.8.5.7870
    • Wang, X., Gocek, E., Liu, C. G., and Studzinski, G. P. (2009). MicroRNAs181 regulate the expression of p27(Kip1) in human myeloid leukemia cells induced to differentiate by 1,25-dihydroxyvitamin D(3). Cell Cycle 8, 736-741. doi: 10.4161/cc.8.5.7870.
    • (2009) Cell Cycle , vol.8 , pp. 736-741
    • Wang, X.1    Gocek, E.2    Liu, C.G.3    Studzinski, G.P.4
  • 157
    • 0037981379 scopus 로고    scopus 로고
    • Impact of the Vitamin D3 receptor on growth-regulatory pathways in mammary gland and breast cancer
    • doi: 10.1016/S0960-0760(02)00277-7
    • Welsh, J., Wietzke, J. A., Zinser, G. M., Smyczek, S., Romu, S., Tribble, E., et al. (2002). Impact of the Vitamin D3 receptor on growth-regulatory pathways in mammary gland and breast cancer. J. Steroid Biochem. Mol. Biol. 83, 85-92. doi: 10.1016/S0960-0760(02)00277-7.
    • (2002) J. Steroid Biochem. Mol. Biol. , vol.83 , pp. 85-92
    • Welsh, J.1    Wietzke, J.A.2    Zinser, G.M.3    Smyczek, S.4    Romu, S.5    Tribble, E.6
  • 158
    • 84896816169 scopus 로고    scopus 로고
    • miR-125b Regulation of Androgen receptor signaling via modulation of the receptor complex co-repressor NCOR2
    • doi: 10.1089/biores.2012.9903
    • Yang, X., Bemis, L., Su, L. J., Gao, D., and Flaig, T. W. (2012). miR-125b Regulation of Androgen receptor signaling via modulation of the receptor complex co-repressor NCOR2. Biores. Open Access, 1, 55-62. doi: 10.1089/biores.2012.9903.
    • (2012) Biores. Open Access , vol.1 , pp. 55-62
    • Yang, X.1    Bemis, L.2    Su, L.J.3    Gao, D.4    Flaig, T.W.5
  • 159
    • 33747157406 scopus 로고    scopus 로고
    • Nuclear receptor expression links the circadian clock to metabolism
    • doi: 10.1016/j.cell.2006.06.050
    • Yang, X., Downes, M., Yu, R. T., Bookout, A. L., He, W., Straume, M., et al. (2006). Nuclear receptor expression links the circadian clock to metabolism. Cell 126, 801-810. doi: 10.1016/j.cell.2006.06.050.
    • (2006) Cell , vol.126 , pp. 801-810
    • Yang, X.1    Downes, M.2    Yu, R.T.3    Bookout, A.L.4    He, W.5    Straume, M.6
  • 160
    • 0032493455 scopus 로고    scopus 로고
    • The TRAP220 component of a thyroid hormone receptor-associated protein (TRAP) coactivator complex interacts directly with nuclear receptors in a ligand-dependent fashion
    • doi: 10.1073/pnas.95.14.7939
    • Yuan, C. X., Ito, M., Fondell, J. D., Fu, Z. Y., and Roeder, R. G. (1998). The TRAP220 component of a thyroid hormone receptor-associated protein (TRAP) coactivator complex interacts directly with nuclear receptors in a ligand-dependent fashion. Proc. Natl. Acad. Sci. U.S.A. 95, 7939-7944. doi: 10.1073/pnas.95.14.7939.
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 7939-7944
    • Yuan, C.X.1    Ito, M.2    Fondell, J.D.3    Fu, Z.Y.4    Roeder, R.G.5
  • 161
    • 33744470323 scopus 로고    scopus 로고
    • Enhancers located within two introns of the vitamin D receptor gene mediate transcriptional autoregulation by 1,25-dihydroxyvitamin D3
    • doi: 10.1210/me.2006-0015
    • Zella, L. A., Kim, S., Shevde, N. K., and Pike, J. W. (2006). Enhancers located within two introns of the vitamin D receptor gene mediate transcriptional autoregulation by 1,25-dihydroxyvitamin D3. Mol. Endocrinol. 20, 1231-1247. doi: 10.1210/me.2006-0015.
    • (2006) Mol. Endocrinol. , vol.20 , pp. 1231-1247
    • Zella, L.A.1    Kim, S.2    Shevde, N.K.3    Pike, J.W.4
  • 162
    • 84928169015 scopus 로고    scopus 로고
    • Vitamin D receptor regulates TGF-β signalling in systemic sclerosis
    • doi: 10.1136/annrheumdis-2013-204378. [Epub ahead of print].
    • Zerr, P., Vollath, S., Palumbo-Zerr, K., Tomcik, M., Huang, J., Distler, A., et al. (2014). Vitamin D receptor regulates TGF-β signalling in systemic sclerosis. Ann. Rheum. Dis. doi: 10.1136/annrheumdis-2013-204378. [Epub ahead of print].
    • (2014) Ann. Rheum. Dis
    • Zerr, P.1    Vollath, S.2    Palumbo-Zerr, K.3    Tomcik, M.4    Huang, J.5    Distler, A.6
  • 163
    • 0042818072 scopus 로고    scopus 로고
    • Nuclear coactivator-62 kDa/Ski-interacting protein is a nuclear matrix-associated coactivator that may couple vitamin D receptor-mediated transcription and RNA splicing
    • doi: 10.1074/jbc.M305191200
    • Zhang, C., Dowd, D. R., Staal, A., Gu, C., Lian, J. B., van Wijnen, A. J., et al. (2003). Nuclear coactivator-62 kDa/Ski-interacting protein is a nuclear matrix-associated coactivator that may couple vitamin D receptor-mediated transcription and RNA splicing. J. Biol. Chem. 278, 35325-35336. doi: 10.1074/jbc.M305191200.
    • (2003) J. Biol. Chem. , vol.278 , pp. 35325-35336
    • Zhang, C.1    Dowd, D.R.2    Staal, A.3    Gu, C.4    Lian, J.B.5    van Wijnen, A.J.6
  • 164
    • 79952126479 scopus 로고    scopus 로고
    • Specific microRNAs are preferentially expressed by skin stem cells to balance self-renewal and early lineage commitment
    • doi: 10.1016/j.stem.2011.01.014
    • Zhang, L., Stokes, N., Polak, L., and Fuchs, E. (2011). Specific microRNAs are preferentially expressed by skin stem cells to balance self-renewal and early lineage commitment. Cell Stem Cell 8, 294-308. doi: 10.1016/j.stem.2011.01.014.
    • (2011) Cell Stem Cell , vol.8 , pp. 294-308
    • Zhang, L.1    Stokes, N.2    Polak, L.3    Fuchs, E.4
  • 165
    • 73949157195 scopus 로고    scopus 로고
    • Bioinformatics analysis of microarray data
    • doi: 10.1007/978-1-60761-247-6_15
    • Zhang, Y., Szustakowski, J., and Schinke, M. (2009). Bioinformatics analysis of microarray data. Methods Mol. Biol. 573, 259-284. doi: 10.1007/978-1-60761-247-6_15.
    • (2009) Methods Mol. Biol. , vol.573 , pp. 259-284
    • Zhang, Y.1    Szustakowski, J.2    Schinke, M.3
  • 166
    • 79953789899 scopus 로고    scopus 로고
    • PTPH1 cooperates with vitamin D receptor to stimulate breast cancer growth through their mutual stabilization
    • doi: 10.1038/onc.2010.543
    • Zhi, H. Y., Hou, S. W., Li, R. S., Basir, Z., Xiang, Q., Szabo, A., et al. (2011). PTPH1 cooperates with vitamin D receptor to stimulate breast cancer growth through their mutual stabilization. Oncogene 30, 1706-1715. doi: 10.1038/onc.2010.543.
    • (2011) Oncogene , vol.30 , pp. 1706-1715
    • Zhi, H.Y.1    Hou, S.W.2    Li, R.S.3    Basir, Z.4    Xiang, Q.5    Szabo, A.6
  • 167
    • 84895927946 scopus 로고    scopus 로고
    • Transcriptomic analysis reveals key regulators of mammogenesis and the pregnancy-lactation cycle
    • doi: 10.1007/s11427-013-4579-9
    • Zhou, Y., Gong, W., Xiao, J., Wu, J., Pan, L., Li, X., et al. (2014). Transcriptomic analysis reveals key regulators of mammogenesis and the pregnancy-lactation cycle. Sci. China Life Sci. 57, 340-355. doi: 10.1007/s11427-013-4579-9.
    • (2014) Sci. China Life Sci. , vol.57 , pp. 340-355
    • Zhou, Y.1    Gong, W.2    Xiao, J.3    Wu, J.4    Pan, L.5    Li, X.6


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