Bacterial artificial chromosome libraries for mouse sequencing and functional analysis

Genome Research

Volumn 10, Issue 1, 2000, Pages 116-128

  Osoegawa, Kazutoyo ^a,e   Tateno, Minako ^a,b   Woon, Peng Yeong ^a,c   Frengen, Eirik ^a,d   Mammoser, Aaron G ^a   Catanese, Joseph J ^a,e   Hayashizaki, Yoshihide ^b   De Jong, Pieter J ^a,e  

^a ROSWELL PARK CANCER INSTITUTE   (United States)

^b INST OF PHYS AND CHEMICAL RESEARCH   (Japan)

^c UNIVERSITY OF OXFORD   (United Kingdom)

^d UNIVERSITY OF OSLO   (Norway)

^e CHILDREN S HOSPITAL OAKLAND RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RESTRICTION ENDONUCLEASE;

ANIMAL CELL; ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CHIMERA; CLONE; DNA FINGERPRINTING; DNA HYBRIDIZATION; DNA LIBRARY; DNA SEQUENCE; GENE INSERTION; GENE MAPPING; GENE REARRANGEMENT; GENE SEQUENCE; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

ANIMALS; BACTERIOPHAGE P1; BRAIN CHEMISTRY; CHROMOSOMES, BACTERIAL; DNA; FEMALE; GENETIC MARKERS; GENOMIC LIBRARY; KIDNEY; MICE; MICE, INBRED C57BL; MOLECULAR SEQUENCE DATA; REPRODUCIBILITY OF RESULTS; SEQUENCE ANALYSIS, DNA; SPLEEN;

ANIMALIA; BACTERIA (MICROORGANISMS); MAMMALIA; MURINAE; RODENTIA;

EID: 0033968788     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (30)

1. Altschul, S.F., W. Gish, W. Miller, E.W. Myers, and D.J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
2. Chu, G., D. Vollrath, and R.W. Davis. 1986. Separation of large DNA molecules by contour-clamped homogeneous electric field. Science 234: 1582-1585.
3. Dunham, I., K. Dewar, U.-J. Kim, and M.T. Ross. 1999. In Genome analysis: A laboratory manual, vol. 3 (eds. B. Birren, E.D. Green, P. Hieter, S. Klapholz, R.M. Myers, H. Riethman, and J. Roskams), pp. 3-6. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
4. Frengen, E., D. Weichenhan, B. Zhao, K. Osoegawa, M. van Geel, and P.J. de Jong. 1999. A modular positive selection bacterial artificial chromosome vector with multiple cloning sites. Genomics 58: 250-253.
5. Green, E.D., H.C. Riethman, J.E. Dutchik, and M.V. Olson. 1991. Detection and characterization of chimeric yeast artificial chromosome clones. Genomics 11: 658-669.
6. Gregory, S., C. Soderlund, and A. Coulson. 1996. Contig assembly by fingerprinting. In Genome mapping: A practical approach (ed. P.H. Dear), pp. 227-254. Oxford University Press, Oxford.
7. Gregory, S.G., G.R. Howell, and D.R. Bentley. 1997. Genome mapping by fluorescent fingerprinting. Genome Res. 7: 1162-1168.
8. Haldi, M., V. Perrot, M. Saumier, T. Desai, D. Cohen, D. Cherif, D. Ward, and E.S. Lander. 1994. Large human YACs constructed in a rad52 strain show a reduced rate of chimerism. Genomics 24: 478-484.
9. Ioannou, P.A., C.T. Amemiya, J. Garnes, P.M. Kroisel, H. Shizuya, C. Chen, M.A. Batzer, and P.J. de Jong. 1994. A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nat. Genet. 6: 84-89.
10. Kim, U.-J., B.W. Birren, T. Slepak, V. Mancino, C. Boysen, H.-L. Kang, M.I. Simon, and H. Shizuya. 1996. Construction and characterization of a human bacterial artificial chromosome library. Genomics 34: 213-218.
11. Korenberg, J.R., X.N. Chen, K.L. Devon, D. Noya, M.L. Oster-Granite, and B.W. Birren. 1999. Mouse molecular cytogenetic resource: 157 BACs link the chromosomal and genetic maps. Genome Res. 9: 514-523.
12. Lyons, L.A., T.F. Laughlin, N.G. Copeland, N.A. Jenkins, J.E. Womack, and S.J. O'Brien. 1997. Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes. Nat. Genet. 15: 47-56.
13. Marra, M.A., T.A. Kucaba, N.L. Dietrich, E.D. Green, B. Brownstein, R.K. Wilson, K.M. McDonald, L.W. Hillier, J.D. McPherson, and R.H. Waterston. 1997. High throughput fingerprint analysis of large-insert clones. Genome Res. 7: 1072-1084.
14. McPherson, J.D. 1999. In Genome analysis: A laboratory manual, vol. 4 (eds. B. Birren, E.D. Green, P. Hieter, S. Klapholz, R.M. Myers, H. Riethman, and J. Roskams), pp. 207-213. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
15. Osoegawa, K., P.-Y. Woon, B. Zhao, E. Frengen, M. Tateno, J.J. Catanese, and P.J. de Jong. 1998. An improved approach for construction of bacterial artificial chromosome libraries. Genomics 52: 1-8.
16. Probst, F.J., R.A. Fridell, Y. Raphael, T.L. Saunders, A. Wang, Y. Liang, R.J. Morell, J.W. Touchman, R.H. Lyons, K. Noben-Trauth, T.B. Friedman, and S.A. Camper. 1998. Correction of deafness in shaker-2 mice by an unconventional myosin in a BAC transgene. Science 280: 1444-1447.
17. Sambrook, J., E.F. Fritsch, and T. Maniatis. 1989. Molecular cloning: A laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
18. Shizuya, H., B. Birren, U.-J. Kim, V. Mancino, T. Slepak, Y. Tachiiri, and M. Simon. 1992. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. 89: 8794-8797.
19. Simpson, E.M., C.C. Linder, E.E. Sargent, M.T. Davisson, L.E. Mobraaten, and J.J. Sharp. 1997. Genetic variation among 129 substrains and its importance for targeted mutagenesis in mice. Nat. Genet. 16: 19-27.
20. Smith, D.J., M.E. Stevens, S.P. Sudanagunta, R.T. Bronson, M. Makhinson, A.M. Watanabe, T.J. O'Dell, J. Fung, H.-U.G. Weier, J.-F. Cheng, and E.M. Rubin. 1997. Functional screening of 2 Mb of human chromosome 21q22.2 in transgenic mice implicates minibrain in learning defects associated with Down syndrome. Nat. Genet. 16: 28-36.
21. Soderlund, C., I. Longden, and R. Mott. 1997. FPC: A system for building contigs from restriction fingerprinted clones. Comput. Appl. Biosci. 13:(5) 523-535.
22. Soderlund, C., I. Longden, and I. Dunham. 1997. Sequence ready clones. In Guide to human genome computing (ed. M.J. Bishop), pp. 151-179, Academic Press.
23. Strong, S.J., Y. Ohta, G.W. Litman, and C.T. Amemiya. 1997. Marked improvement of PAC and BAC cloning is achieved using electroelution of pulsed-field gel-separated partial digests of genomic DNA. Nucleic Acids Res. 25: 3959-3961.
24. Sulston, J., F. Mallett, R. Staden, R. Durbin, T. Horsnell, and A. Coulson. 1988. Software for genome mapping by fingerprinting techniques. Comput. Appl. Biosci. 4:(1) 125-132.
25. Sulston, J., F. Mallett, R. Durbin, and T. Horsnell. 1989. Image analysis of restriction enzyme fingerprint autoradiograms. Comput. Appl. Biosci. 5:(2) 101-106.
26. Venter, J.C., H.O. Smith, and L. Hood. 1996. A new strategy for genome sequencing. Nature 381: 364-366.
27. Woon, P.-Y., K. Osoegawa, P.J. Kaisaki, B. Zhao, J.J. Catanese, D. Gauguier, R. Cox, E.R. Levy, G.M. Lathrop, A.P. Monaco, and P.J. de Jong. 1998. Construction and characterization of a 10-fold genome equivalent rat P1-derived artificial chromosomal library. Genomics 50: 306-316.
28. Wynshaw-Boris, A. 1996. Model mice and human disease. Nat. Genet. 13: 259-260.
29. Yang, X.W., P. Model, and N. Heintz. 1997. Homologous recombination based modification in Escherichia coli and germline transmission in transgenic mice of a bacterial artificial chromosome. Nat. Biotech. 15: 859-865.
30. Zhang, Y., F. Buchholz, J.P. Muyrers, and A.F. Stewart. 1998. A new logic for DNA engineering using recombination in Escherichia coli. Nat. Genet. 20: 123-128.