-
1
-
-
33845756711
-
Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution
-
DOI 10.1128/JVI.01231-06
-
Li B, Gladden AD, Altfeld M, Kaldor JM, Cooper DA, et al. (2007) Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution. J Virol 81: 193-201. (Pubitemid 44975160)
-
(2007)
Journal of Virology
, vol.81
, Issue.1
, pp. 193-201
-
-
Li, B.1
Gladden, A.D.2
Altfeld, M.3
Kaldor, J.M.4
Cooper, D.A.5
Kelleher, A.D.6
Allen, T.M.7
-
2
-
-
49149100897
-
Molecular evolution of human immunodeficiency virus type 1 upon transmission between human leukocyte antigen disparate donor-recipient pairs
-
Navis M, Matas DE, Rachinger A, Koning FA, van Swieten P, et al. (2008) Molecular evolution of human immunodeficiency virus type 1 upon transmission between human leukocyte antigen disparate donor-recipient pairs. PLoS One 3: e2422.
-
(2008)
PLoS One
, vol.3
-
-
Navis, M.1
Matas, D.E.2
Rachinger, A.3
Koning, F.A.4
Van Swieten, P.5
-
3
-
-
70450192911
-
Timing constraints of in vivo gag mutations during primary HIV-1 subtype C infection
-
Novitsky V, Wang R, Margolin L, Baca J, Kebaabetswe L, et al. (2009) Timing constraints of in vivo gag mutations during primary HIV-1 subtype C infection. PLoS One 4: e7727.
-
(2009)
PLoS One
, vol.4
-
-
Novitsky, V.1
Wang, R.2
Margolin, L.3
Baca, J.4
Kebaabetswe, L.5
-
4
-
-
27144513224
-
+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution
-
DOI 10.1128/JVI.79.21.13239-13249.2005
-
Allen TM, Altfeld M, Geer SC, Kalife ET, Moore C, et al. (2005) Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution. J Virol 79: 13239-13249. (Pubitemid 41508139)
-
(2005)
Journal of Virology
, vol.79
, Issue.21
, pp. 13239-13249
-
-
Allen, T.M.1
Altfeld, M.2
Geer, S.C.3
Kalife, E.T.4
Moore, C.5
O'Sullivan, K.M.6
DeSouza, I.7
Feeney, M.E.8
Eldridge, R.L.9
Maier, E.L.10
Kaufmann, D.E.11
Lahaie, M.P.12
Reyor, L.13
Tanzi, G.14
Johnston, M.N.15
Brander, C.16
Draenert, R.17
Rockstroh, J.K.18
Jessen, H.19
Rosenberg, E.S.20
Mallal, S.A.21
Walker, B.D.22
more..
-
5
-
-
1842741699
-
HIV evolution: CTL escape mutation and reversion after transmission
-
DOI 10.1038/nm992
-
Leslie AJ, Pfafferott KJ, Chetty P, Draenert R, Addo MM, et al. (2004) HIV evolution: CTL escape mutation and reversion after transmission. Nat Med 10: 282-289. (Pubitemid 38667619)
-
(2004)
Nature Medicine
, vol.10
, Issue.3
, pp. 282-289
-
-
Leslie, A.J.1
Pfafferott, K.J.2
Chetty, P.3
Draenert, R.4
Addo, M.M.5
Feeney, M.6
Tang, Y.7
Holmes, E.C.8
Allen, T.9
Prado, J.G.10
Altfeld, M.11
Brander, C.12
Dixon, C.13
Ramduth, D.14
Jeena, P.15
Thomas, S.A.16
St, J.A.17
Roach, T.A.18
Kupfer, B.19
Luzzi, G.20
Edwards, A.21
Taylor, G.22
Lyall, H.23
Tudor-Williams, G.24
Novelli, V.25
Martinez-Picado, J.26
Kiepiela, P.27
Walker, B.D.28
Goulder, P.J.R.29
more..
-
6
-
-
59749085611
-
HLA-associated clinical progression correlates with epitope reversion rates in early human immunodeficiency virus infection
-
Duda A, Lee-Turner L, Fox J, Robinson N, Dustan S, et al. (2009) HLA-associated clinical progression correlates with epitope reversion rates in early human immunodeficiency virus infection. J Virol 83: 1228-1239.
-
(2009)
J Virol
, vol.83
, pp. 1228-1239
-
-
Duda, A.1
Lee-Turner, L.2
Fox, J.3
Robinson, N.4
Dustan, S.5
-
7
-
-
77953292836
-
Dynamics and timing of in vivo mutations at Gag residue 242 during primary HIV-1 subtype C infection
-
Novitsky V, Wang R, Margolin L, Baca J, Moyo S, et al. (2010) Dynamics and timing of in vivo mutations at Gag residue 242 during primary HIV-1 subtype C infection. Virology 403: 37-46.
-
(2010)
Virology
, vol.403
, pp. 37-46
-
-
Novitsky, V.1
Wang, R.2
Margolin, L.3
Baca, J.4
Moyo, S.5
-
8
-
-
50949117244
-
Marked epitope- and allele-specific differences in rates of mutation in human immunodeficiency type 1 (HIV-1) Gag, Pol, and Nef cytotoxic T-lymphocyte epitopes in acute/early HIV-1 infection
-
Brumme ZL, Brumme CJ, Carlson J, Streeck H, John M, et al. (2008) Marked epitope- and allele-specific differences in rates of mutation in human immunodeficiency type 1 (HIV-1) Gag, Pol, and Nef cytotoxic T-lymphocyte epitopes in acute/early HIV-1 infection. J Virol 82: 9216-9227.
-
(2008)
J Virol
, vol.82
, pp. 9216-9227
-
-
Brumme, Z.L.1
Brumme, C.J.2
Carlson, J.3
Streeck, H.4
John, M.5
-
9
-
-
67449147145
-
The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection
-
Goonetilleke N, Liu MK, Salazar-Gonzalez JF, Ferrari G, Giorgi E, et al. (2009) The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection. J Exp Med 206: 1253-1272.
-
(2009)
J Exp Med
, vol.206
, pp. 1253-1272
-
-
Goonetilleke, N.1
Liu, M.K.2
Salazar-Gonzalez, J.F.3
Ferrari, G.4
Giorgi, E.5
-
10
-
-
42949092720
-
Transmission of HIV-1 CTL escape variants provides HLA-mismatched recipients with a survival advantage
-
Chopera DR, Woodman Z, Mlisana K, Mlotshwa M, Martin DP, et al. (2008) Transmission of HIV-1 CTL escape variants provides HLA-mismatched recipients with a survival advantage. PLoS Pathog 4: e1000033.
-
(2008)
PLoS Pathog
, vol.4
-
-
Chopera, D.R.1
Woodman, Z.2
Mlisana, K.3
Mlotshwa, M.4
Martin, D.P.5
-
11
-
-
0035913225
-
Evolution and transmission of stable CTL escape mutations in HIV infection
-
DOI 10.1038/35085576
-
Goulder PJ, Brander C, Tang Y, Tremblay C, Colbert RA, et al. (2001) Evolution and transmission of stable CTL escape mutations in HIV infection. Nature 412: 334-338. (Pubitemid 32694384)
-
(2001)
Nature
, vol.412
, Issue.6844
, pp. 334-338
-
-
Goulder, P.J.R.1
Brander, C.2
Tang, Y.3
Tremblay, C.4
Colbert, R.A.5
Addo, M.M.6
Rosenberg, E.S.7
Nguyen, T.8
Allen, R.9
Trocha, A.10
Altfeld, M.11
He, S.12
Bunce, M.13
Funkhouser, R.14
Pelton, S.I.15
Burchett, S.K.16
McIntosh, K.17
Korber, B.T.M.18
Walker, B.D.19
-
12
-
-
85047684409
-
Evolution of HLA-B*5703 HIV-1 escape mutations in HLA-B*5703-positive individuals and their transmission recipients
-
Crawford H, Lumm W, Leslie A, Schaefer M, Boeras D, et al. (2009) Evolution of HLA-B*5703 HIV-1 escape mutations in HLA-B*5703- positive individuals and their transmission recipients. J Exp Med 206: 909-921.
-
(2009)
J Exp Med
, vol.206
, pp. 909-921
-
-
Crawford, H.1
Lumm, W.2
Leslie, A.3
Schaefer, M.4
Boeras, D.5
-
13
-
-
77957901912
-
Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing
-
Fischer W, Ganusov VV, Giorgi EE, Hraber PT, Keele BF, et al. (2010) Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing. PLoS One 5: e12303.
-
(2010)
PLoS One
, vol.5
-
-
Fischer, W.1
Ganusov, V.V.2
Giorgi, E.E.3
Hraber, P.T.4
Keele, B.F.5
-
14
-
-
33645240933
-
Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1
-
Martinez-Picado J, Prado JG, Fry EE, Pfafferott K, Leslie A, et al. (2006) Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1. J Virol 80: 3617-3623.
-
(2006)
J Virol
, vol.80
, pp. 3617-3623
-
-
Martinez-Picado, J.1
Prado, J.G.2
Fry, E.E.3
Pfafferott, K.4
Leslie, A.5
-
15
-
-
36048995423
-
Escape and compensation from early HLA-B57-mediated cytotoxic T-lymphocyte pressure on human immunodeficiency virus type 1 Gag alter capsid interactions with cyclophilin A
-
DOI 10.1128/JVI.01369-07
-
Brockman MA, Schneidewind A, Lahaie M, Schmidt A, Miura T, et al. (2007) Escape and compensation from early HLA-B57-mediated cytotoxic T-lymphocyte pressure on human immunodeficiency virus type 1 Gag alter capsid interactions with cyclophilin A. J Virol 81: 12608-12618. (Pubitemid 350085874)
-
(2007)
Journal of Virology
, vol.81
, Issue.22
, pp. 12608-12618
-
-
Brockman, M.A.1
Schneidewind, A.2
Lahaie, M.3
Schmidt, A.4
Miura, T.5
DeSouza, I.6
Ryvkin, F.7
Derdeyn, C.A.8
Allen, S.9
Hunter, E.10
Mulenga, J.11
Goepfert, P.A.12
Walker, B.D.13
Allen, T.M.14
-
16
-
-
62749177486
-
HLA-B57/B*5801 human immunodeficiency virus type 1 elite controllers select for rare gag variants associated with reduced viral replication capacity and strong cytotoxic T-lymphocyte [corrected] recognition
-
Miura T, Brockman MA, Schneidewind A, Lobritz M, Pereyra F, et al. (2009) HLA-B57/B*5801 human immunodeficiency virus type 1 elite controllers select for rare gag variants associated with reduced viral replication capacity and strong cytotoxic T-lymphocyte [corrected] recognition. J Virol 83: 2743-2755.
-
(2009)
J Virol
, vol.83
, pp. 2743-2755
-
-
Miura, T.1
Brockman, M.A.2
Schneidewind, A.3
Lobritz, M.4
Pereyra, F.5
-
17
-
-
43549109265
-
Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients
-
DOI 10.1084/jem.20072457
-
Goepfert PA, Lumm W, Farmer P, Matthews P, Prendergast A, et al. (2008) Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients. J Exp Med 205: 1009-1017. (Pubitemid 351679677)
-
(2008)
Journal of Experimental Medicine
, vol.205
, Issue.5
, pp. 1009-1017
-
-
Goepfert, P.A.1
Lumm, W.2
Farmer, P.3
Matthews, P.4
Prendergast, A.5
Carlson, J.M.6
Derdeyn, C.A.7
Tang, J.8
Kaslow, R.A.9
Bansal, A.10
Yusim, K.11
Heckerman, D.12
Mulenga, J.13
Allen, S.14
Goulder, P.J.R.15
Hunter, E.16
-
18
-
-
84857959077
-
Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response
-
Troyer RM, McNevin J, Liu Y, Zhang SC, Krizan RW, et al. (2009) Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response. PLoS Pathog 5: e1000365.
-
(2009)
PLoS Pathog
, vol.5
-
-
Troyer, R.M.1
McNevin, J.2
Liu, Y.3
Zhang, S.C.4
Krizan, R.W.5
-
19
-
-
84875527661
-
Frequent and variable cytotoxic-T-lymphocyte escape-associated fitness costs in the human immunodeficiency virus type 1 subtype B Gag proteins
-
Boutwell CL, Carlson JM, Lin TH, Seese A, Power KA, et al. (2013) Frequent and variable cytotoxic-T-lymphocyte escape-associated fitness costs in the human immunodeficiency virus type 1 subtype B Gag proteins. J Virol 87: 3952-3965.
-
(2013)
J Virol
, vol.87
, pp. 3952-3965
-
-
Boutwell, C.L.1
Carlson, J.M.2
Lin, T.H.3
Seese, A.4
Power, K.A.5
-
20
-
-
58149398654
-
HLA-associated alterations in replication capacity of chimeric NL4-3 viruses carrying gag-protease from elite controllers of human immunodeficiency virus type 1
-
Miura T, Brockman MA, Brumme ZL, Brumme CJ, Pereyra F, et al. (2009) HLA-associated alterations in replication capacity of chimeric NL4-3 viruses carrying gag-protease from elite controllers of human immunodeficiency virus type 1. J Virol 83: 140-149.
-
(2009)
J Virol
, vol.83
, pp. 140-149
-
-
Miura, T.1
Brockman, M.A.2
Brumme, Z.L.3
Brumme, C.J.4
Pereyra, F.5
-
21
-
-
77954512323
-
Impaired replication capacity of acute/early viruses in persons who become HIV controllers
-
Miura T, Brumme ZL, Brockman MA, Rosato P, Sela J, et al. (2010) Impaired replication capacity of acute/early viruses in persons who become HIV controllers. J Virol 84: 7581-7591.
-
(2010)
J Virol
, vol.84
, pp. 7581-7591
-
-
Miura, T.1
Brumme, Z.L.2
Brockman, M.A.3
Rosato, P.4
Sela, J.5
-
22
-
-
70349293668
-
Impact of HLA in mother and child on disease progression of pediatric human immunodeficiency virus type 1 infection
-
Thobakgale CF, Prendergast A, Crawford H, Mkhwanazi N, Ramduth D, et al. (2009) Impact of HLA in mother and child on disease progression of pediatric human immunodeficiency virus type 1 infection. J Virol 83: 10234-10244.
-
(2009)
J Virol
, vol.83
, pp. 10234-10244
-
-
Thobakgale, C.F.1
Prendergast, A.2
Crawford, H.3
Mkhwanazi, N.4
Ramduth, D.5
-
23
-
-
34547138161
-
Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted gag epitope in chronic human immunodeficiency virus type 1 infection
-
DOI 10.1128/JVI.00465-07
-
Crawford H, Prado JG, Leslie A, Hue S, Honeyborne I, et al. (2007) Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection. J Virol 81: 8346-8351. (Pubitemid 47101520)
-
(2007)
Journal of Virology
, vol.81
, Issue.15
, pp. 8346-8351
-
-
Crawford, H.1
Prado, J.G.2
Leslie, A.3
Hue, S.4
Honeyborne, I.5
Reddy, S.6
Van Der, S.M.7
Mncube, Z.8
Brander, C.9
Rousseau, C.10
Mullins, J.I.11
Kaslow, R.12
Goepfert, P.13
Allen, S.14
Hunter, E.15
Mulenga, J.16
Kiepiela, P.17
Walker, B.D.18
Goulder, P.J.R.19
-
24
-
-
36048949732
-
Escape from the dominant HLA-B27-restricted cytotoxic T-lymphocyte response in gag is associated with a dramatic reduction in human immunodeficiency virus type 1 replication
-
DOI 10.1128/JVI.01543-07
-
Schneidewind A, Brockman MA, Yang R, Adam RI, Li B, et al. (2007) Escape from the dominant HLA-B27-restricted cytotoxic T-lymphocyte response in Gag is associated with a dramatic reduction in human immunodeficiency virus type 1 replication. J Virol 81: 12382-12393. (Pubitemid 350085852)
-
(2007)
Journal of Virology
, vol.81
, Issue.22
, pp. 12382-12393
-
-
Schneidewind, A.1
Brockman, M.A.2
Yang, R.3
Adam, R.I.4
Li, B.5
Le, G.S.6
Rinaldo, C.R.7
Craggs, S.L.8
Allgaier, R.L.9
Power, K.A.10
Kuntzen, T.11
Tung, C.-S.12
LaBute, M.X.13
Mueller, S.M.14
Harrer, T.15
McMichael, A.J.16
Goulder, P.J.R.17
Aiken, C.18
Brander, C.19
Kelleher, A.D.20
Allen, T.M.21
more..
-
25
-
-
84867897064
-
Impact of immune escape mutations on HIV-1 fitness in the context of the cognate transmitted/founder genome
-
Song H, Pavlicek JW, Cai F, Bhattacharya T, Li H, et al. (2012) Impact of immune escape mutations on HIV-1 fitness in the context of the cognate transmitted/founder genome. Retrovirology 9: 89.
-
(2012)
Retrovirology
, vol.9
, pp. 89
-
-
Song, H.1
Pavlicek, J.W.2
Cai, F.3
Bhattacharya, T.4
Li, H.5
-
26
-
-
78049495989
-
Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection
-
Brockman MA, Brumme ZL, Brumme CJ, Miura T, Sela J, et al. (2010) Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection. J Virol 84: 11937-11949.
-
(2010)
J Virol
, vol.84
, pp. 11937-11949
-
-
Brockman, M.A.1
Brumme, Z.L.2
Brumme, C.J.3
Miura, T.4
Sela, J.5
-
27
-
-
38449099323
-
Viral replication capacity as a correlate of HLA B57/B5801-associated nonprogressive HIV-1 infection
-
Navis M, Schellens I, van Baarle D, Borghans J, van Swieten P, et al. (2007) Viral replication capacity as a correlate of HLA B57/B5801-associated nonprogressive HIV-1 infection. J Immunol 179: 3133-3143.
-
(2007)
J Immunol
, vol.179
, pp. 3133-3143
-
-
Navis, M.1
Schellens, I.2
Van Baarle, D.3
Borghans, J.4
Van Swieten, P.5
-
28
-
-
79955533328
-
Progression to AIDS in South Africa is associated with both reverting and compensatory viral mutations
-
Huang KH, Goedhals D, Carlson JM, Brockman MA, Mishra S, et al. (2011) Progression to AIDS in South Africa is associated with both reverting and compensatory viral mutations. PLoS One 6: e19018.
-
(2011)
PLoS One
, vol.6
-
-
Huang, K.H.1
Goedhals, D.2
Carlson, J.M.3
Brockman, M.A.4
Mishra, S.5
-
29
-
-
84857830668
-
Generation of transmitted/founder HIV-1 infectious molecular clones and characterization of their replication capacity in CD4 T lymphocytes and monocyte-derived macrophages
-
Ochsenbauer C, Edmonds TG, Ding H, Keele BF, Decker J, et al. (2012) Generation of transmitted/founder HIV-1 infectious molecular clones and characterization of their replication capacity in CD4 T lymphocytes and monocyte-derived macrophages. J Virol 86: 2715-2728.
-
(2012)
J Virol
, vol.86
, pp. 2715-2728
-
-
Ochsenbauer, C.1
Edmonds, T.G.2
Ding, H.3
Keele, B.F.4
Decker, J.5
-
30
-
-
80055021610
-
Primary infection by a human immunodeficiency virus with atypical coreceptor tropism
-
Jiang C, Parrish NF, Wilen CB, Li H, Chen Y, et al. (2011) Primary infection by a human immunodeficiency virus with atypical coreceptor tropism. J Virol 85: 10669-10681.
-
(2011)
J Virol
, vol.85
, pp. 10669-10681
-
-
Jiang, C.1
Parrish, N.F.2
Wilen, C.B.3
Li, H.4
Chen, Y.5
-
31
-
-
33947525868
-
Detection of minor drug-resistant populations by parallel allele-specific sequencing
-
Cai F, Chen H, Hicks CB, Bartlett JA, Zhu J, et al. (2007) Detection of minor drug-resistant populations by parallel allele-specific sequencing. Nat Methods 4: 123-125.
-
(2007)
Nat Methods
, vol.4
, pp. 123-125
-
-
Cai, F.1
Chen, H.2
Hicks, C.B.3
Bartlett, J.A.4
Zhu, J.5
-
32
-
-
84863304598
-
-
R Development Core Team Vienna, Austria: R Foundation for Statistical Computing
-
R Development Core Team (2013) R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing.
-
(2013)
R: A Language and Environment for Statistical Computing
-
-
-
33
-
-
84904315679
-
subplex: Subplex optimization algorithm
-
King AA (2008) subplex: Subplex optimization algorithm. R package version 1.1-3. http://CRAN.R-project.org/package=subplex.
-
(2008)
R Package Version 1.1-3
-
-
King, A.A.1
-
34
-
-
84904323288
-
ucminf: General-purpose unconstrained nonlinear optimization
-
Nielsen HB, Mortensen SB (2012) ucminf: General-purpose unconstrained nonlinear optimization. R package version 1.1-3. http://CRAN.R-project.org/ package=ucminf.
-
(2012)
R Package Version 1.1-3
-
-
Nielsen, H.B.1
Mortensen, S.B.2
-
35
-
-
78650905964
-
ROSETTA3: An object-oriented software suite for the simulation and design of macromolecules
-
Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, et al. (2011) ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules. Methods Enzymol 487: 545-574.
-
(2011)
Methods Enzymol
, vol.487
, pp. 545-574
-
-
Leaver-Fay, A.1
Tyka, M.2
Lewis, S.M.3
Lange, O.F.4
Thompson, J.5
-
36
-
-
79551683191
-
Structure of the HIV-1 full-length capsid protein in a conformationally trapped unassembled state induced by small-molecule binding
-
Du S, Betts L, Yang R, Shi H, Concel J, et al. (2011) Structure of the HIV-1 full-length capsid protein in a conformationally trapped unassembled state induced by small-molecule binding. J Mol Biol 406: 371-386.
-
(2011)
J Mol Biol
, vol.406
, pp. 371-386
-
-
Du, S.1
Betts, L.2
Yang, R.3
Shi, H.4
Concel, J.5
-
37
-
-
34250808612
-
Evolution of HIV-1 in an HLA-B*57-positive patient during virologic escape
-
DOI 10.1086/518515
-
Bailey JR, Zhang H, Wegweiser BW, Yang HC, Herrera L, et al. (2007) Evolution of HIV-1 in an HLA-B*57-positive patient during virologic escape. J Infect Dis 196: 50-55. (Pubitemid 46982737)
-
(2007)
Journal of Infectious Diseases
, vol.196
, Issue.1
, pp. 50-55
-
-
Bailey, J.R.1
Zhang, H.2
Wegweiser, B.W.3
Yang, H.-C.4
Herrera, L.5
Ahonkhai, A.6
Williams, T.M.7
Siliciano, R.F.8
Blankson, J.N.9
-
38
-
-
84862621390
-
TCR clonotypes modulate the protective effect of HLA class I molecules in HIV-1 infection
-
Chen H, Ndhlovu ZM, Liu D, Porter LC, Fang JW, et al. (2012) TCR clonotypes modulate the protective effect of HLA class I molecules in HIV-1 infection. Nat Immunol 13: 691-700.
-
(2012)
Nat Immunol
, vol.13
, pp. 691-700
-
-
Chen, H.1
Ndhlovu, Z.M.2
Liu, D.3
Porter, L.C.4
Fang, J.W.5
-
39
-
-
84877321863
-
HIV-1 conserved-element vaccines: Relationship between sequence conservation and replicative capacity
-
Rolland M, Manocheewa S, Swain JV, Lanxon-Cookson EC, Kim M, et al. (2013) HIV-1 conserved-element vaccines: relationship between sequence conservation and replicative capacity. J Virol 87: 5461-5467.
-
(2013)
J Virol
, vol.87
, pp. 5461-5467
-
-
Rolland, M.1
Manocheewa, S.2
Swain, J.V.3
Lanxon-Cookson, E.C.4
Kim, M.5
-
40
-
-
84878381053
-
Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics
-
Zhao G, Perilla JR, Yufenyuy EL, Meng X, Chen B, et al. (2013) Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics. Nature 497: 643-646.
-
(2013)
Nature
, vol.497
, pp. 643-646
-
-
Zhao, G.1
Perilla, J.R.2
Yufenyuy, E.L.3
Meng, X.4
Chen, B.5
-
41
-
-
84863697528
-
Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape
-
Bar KJ, Tsao CY, Iyer SS, Decker JM, Yang Y, et al. (2012) Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape. PLoS Pathog 8: e1002721.
-
(2012)
PLoS Pathog
, vol.8
-
-
Bar, K.J.1
Tsao, C.Y.2
Iyer, S.S.3
Decker, J.M.4
Yang, Y.5
-
42
-
-
66049139947
-
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
-
Salazar-Gonzalez JF, Salazar MG, Keele BF, Learn GH, Giorgi EE, et al. (2009) Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection. J Exp Med 206: 1273-1289.
-
(2009)
J Exp Med
, vol.206
, pp. 1273-1289
-
-
Salazar-Gonzalez, J.F.1
Salazar, M.G.2
Keele, B.F.3
Learn, G.H.4
Giorgi, E.E.5
-
43
-
-
84873830139
-
Vertical T cell immunodominance and epitope entropy determine HIV-1 escape
-
Liu MK, Hawkins N, Ritchie AJ, Ganusov VV, Whale V, et al. (2013) Vertical T cell immunodominance and epitope entropy determine HIV-1 escape. J Clin Invest 123: 380-393.
-
(2013)
J Clin Invest
, vol.123
, pp. 380-393
-
-
Liu, M.K.1
Hawkins, N.2
Ritchie, A.J.3
Ganusov, V.V.4
Whale, V.5
-
44
-
-
0028952146
-
HIV population dynamics in vivo: Implications for genetic variation, pathogenesis, and therapy
-
Coffin JM (1995) HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science 267: 483-489.
-
(1995)
Science
, vol.267
, pp. 483-489
-
-
Coffin, J.M.1
-
45
-
-
79952213493
-
Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection
-
Ferrari G, Korber B, Goonetilleke N, Liu MK, Turnbull EL, et al. (2011) Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection. PLoS Pathog 7: e1001273.
-
(2011)
PLoS Pathog
, vol.7
-
-
Ferrari, G.1
Korber, B.2
Goonetilleke, N.3
Liu, M.K.4
Turnbull, E.L.5
-
46
-
-
84905369598
-
Cooperation of B cell lineages in induction of HIV-1-broadly neutralizing antibodies
-
in press
-
Gao F, Bonsignori M, Liao HX, Kumar A, Xia SM, et al. (2014) Cooperation of B cell lineages in induction of HIV-1-broadly neutralizing antibodies. Cell (in press).
-
(2014)
Cell
-
-
Gao, F.1
Bonsignori, M.2
Liao, H.X.3
Kumar, A.4
Xia, S.M.5
-
47
-
-
84870679723
-
Intersubtype differences in the effect of a rare p24 gag mutation on HIV-1 replicative fitness
-
Chopera DR, Cotton LA, Zawaira A, Mann JK, Ngandu NK, et al. (2012) Intersubtype differences in the effect of a rare p24 gag mutation on HIV-1 replicative fitness. J Virol 86: 13423-13433.
-
(2012)
J Virol
, vol.86
, pp. 13423-13433
-
-
Chopera, D.R.1
Cotton, L.A.2
Zawaira, A.3
Mann, J.K.4
Ngandu, N.K.5
-
48
-
-
84875546274
-
Translating HIV sequences into quantitative fitness landscapes predicts viral vulnerabilities for rational immunogen design
-
Ferguson AL, Mann JK, Omarjee S, Ndung'u T, Walker BD, et al. (2013) Translating HIV sequences into quantitative fitness landscapes predicts viral vulnerabilities for rational immunogen design. Immunity 38: 606-617.
-
(2013)
Immunity
, vol.38
, pp. 606-617
-
-
Ferguson, A.L.1
Mann, J.K.2
Omarjee, S.3
Ndung'U, T.4
Walker, B.D.5
-
49
-
-
67549109069
-
X-ray structures of the hexameric building block of the HIV capsid
-
Pornillos O, Ganser-Pornillos BK, Kelly BN, Hua Y, Whitby FG, et al. (2009) X-ray structures of the hexameric building block of the HIV capsid. Cell 137: 1282-1292.
-
(2009)
Cell
, vol.137
, pp. 1282-1292
-
-
Pornillos, O.1
Ganser-Pornillos, B.K.2
Kelly, B.N.3
Hua, Y.4
Whitby, F.G.5
|